These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TCCAGATATGATATTATCTTCTTCACGAGATAAAACTTTGATTGTGTGGAAATTAACACGTGACGAAGCTAATTATGGTATTCCTCAAAAACGCTTGTATGGTCATTCTCATTTTATTAGTGATGTAGTTCTATCATCTGATGGTAATTATGCTCTGTCTGGTTCGTGGGACAAAACTCTTCGCCTTTGGGATTTGGCTGCAGGTCGTACCACACGAAGATTCGAAGATCATACCAAGGTGTGAAATTTTTCTTCTGATCTATCGTCACTCCTCATGAAATATATGGAAGCTTTTTTTTTTTTTAATTTTTTTTTATTGAATGCTATTGGCAAAAGATGTAACTGTATGAATGTTTAGGAATATACTGAAGCTTTTTTTTATATATTTTTTTTTTTATATTTAATAAATAGAAGNGNNGGGCAATTAAATATATAGTATTGATGTCTTAAGTGTTGCCTTTTCTATTTATTAAAAA] [+] EMBL BI511996 [TCCAGATATGATATTATCTTCTTCACGAGATAAAACTTTGATTGTGTGGAAATTAACACGTGACGAAGCTAATTATGGTATTCCTCAAAAACGCTTGTATGGTCATTCTCATTTTATTAGTGATGTAGTTCTATCATCTGATGGTAATTATGCTCTGTCTGGTTCGTGGGACAAAACTCTTCGCCTTTGGGATTTGGCTGCAGGTCGTACCACACGAAGATTCGAAGATCATACCAAGGTGTGAAATTTTTCTTCTGATCTATCGTCACTCCTCATGAAATATATGGAAGCTTTTTTTTTTTTTAATTTTTTTTTATTGAATGCTATTGGCAAAAGATGTAACTGTATGAATGTTTAGGAATATACTGAAGCTTTTTTTTATATATTTTTTTTTTTATATTTAATAAATAGAAGNGNNGGGCAATTAAATATATAGTATTGATGTCTTAAGTGTTGCCTTTTCTATTTATTAAAAA] consensusID : consensus_452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 452 fasta sequence [ACCCAAATCGCTACAAATCCAAAATATCCAGATATGATATTATCTTCTTCACGAGATAAAACTTTGATTGTGTGGAAATTAACACGTGACGAAGCTAATTATGGTATTCCTCAAAAACGCTTGTATGGTCATTCTCATTTTATTAGTGATGTAGTTCTATCATCTGATGGTAATTATGCTCTGTCTGGTTCGTGGGACAAAACTCTTCGCCTTTGGGATTTGGCTGCAGGTCGTACCACACGAAGATTCGAAGATCATACCAAGGATGTCTTAAGTGTTGCCTTTTCTGTGGATAACCGTCAAATTGTCTCTGGTTCTCGAGATAAAACAATTAAATTATGGAATACTTTAGCTGAATGCAAGTATACTATTCAAGATGATGGGCACACAGACTGGGTCAGTTGTGTACGTTTTTCGCCAAACCATTCAAATCCCATTATTGTTTCTGCAGG] [+] EMBL BI512274 [ACCCAAATCGCTACAAATCCAAAATATCCAGATATGATATTATCTTCTTCACGAGATAAAACTTTGATTGTGTGGAAATTAACACGTGACGAAGCTAATTATGGTATTCCTCAAAAACGCTTGTATGGTCATTCTCATTTTATTAGTGATGTAGTTCTATCATCTGATGGTAATTATGCTCTGTCTGGTTCGTGGGACAAAACTCTTCGCCTTTGGGATTTGGCTGCAGGTCGTACCACACGAAGATTCGAAGATCATACCAAGGATGTCTTAAGTGTTGCCTTTTCTGTGGATAACCGTCAAATTGTCTCTGGTTCTCGAGATAAAACAATTAAATTATGGAATACTTTAGCTGAATGCAAGTATACTATTCAAGATGATGGGCACACAGACTGGGTCAGTTGTGTACGTTTTTCGCCAAACCATTCAAATCCCATTATTGTTTCTGCAGG] [+] EMBL BI515272 [ GCTACAAATCCAAAATATCCAGATATGATATTATCTTCTTCACGAGATAAAACTTTGATTGTGTGGAAATTAACACGTGACGAAGCTAATTATGGTATTCCTCAAAAACGCTTGTATGNNNATTCTCATTTTATTAGTGATGTAGTTCTATCATCTGATGGTAATTATGCTCTGTCTGGTTCGTGGGACAAAACTCTTCGCCTTTGGGATTTGGCTGCAGGTCGTACCACACGAAGATTCGAAGATCATACCAAGGATGTCTTAAGTGTTGCCTTTTCTGTGGATAACCGTCAAATTGTCTCTGGTTCTCGAGATAAAACAATTAAATTATGGAATACTTTAGCTGAATGCAAGTATACTATTCAAGATGATGGGCACACAGACTGGGTCAGTTGTGTACGTTTTTCGCCAAACCATTCAAATCC ] [+] EMBL BI512701 [ TACAAATCCAAAATATCCAGATATGATATTATCTTCTTCACGAGATAAAACTTTGATTGTGTGGAAATTAACACGTGACGAAGCTAATTATGGTATTCCTCAAAAACGCTTGTATGGTCATTCTCATTTTATTAGTGATGTAGTTCTATCATCTGATGGTAATTATGCTCTGTCTGGTTCGTGGGACAAAACTCTTCGCCTTTGGGATTTGGCTGCAGGTCGTACCACACGAAGATTCGAAGATCATACCAAGGATGTCTTAAGTGTTGCCTTTTCTGTGGATAACCGTCAAATTGTCTCTGGTTCTCGAGATAAAACAATTAAATTATGGAATACTTTAGCTGAATGCAAGTATACTATTCAAGATGATGGGCACACAGACTGGGTCAGTTGTGTACGTTTTTCGCCAAACCATTCAAATCCCATTATTGTTTCTGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_452#0 --------------------------TCCAGATATGATATTATCTTCTTCACGAGATAAA 34 consensus_452#1 ACCCAAATCGCTACAAATCCAAAATATCCAGATATGATATTATCTTCTTCACGAGATAAA 60 ********************************** consensus_452#0 ACTTTGATTGTGTGGAAATTAACACGTGACGAAGCTAATTATGGTATTCCTCAAAAACGC 94 consensus_452#1 ACTTTGATTGTGTGGAAATTAACACGTGACGAAGCTAATTATGGTATTCCTCAAAAACGC 120 ************************************************************ consensus_452#0 TTGTATGGTCATTCTCATTTTATTAGTGATGTAGTTCTATCATCTGATGGTAATTATGCT 154 consensus_452#1 TTGTATGGTCATTCTCATTTTATTAGTGATGTAGTTCTATCATCTGATGGTAATTATGCT 180 ************************************************************ consensus_452#0 CTGTCTGGTTCGTGGGACAAAACTCTTCGCCTTTGGGATTTGGCTGCAGGTCGTACCACA 214 consensus_452#1 CTGTCTGGTTCGTGGGACAAAACTCTTCGCCTTTGGGATTTGGCTGCAGGTCGTACCACA 240 ************************************************************ consensus_452#0 CGAAGATTCGAAGATCATACCAAGG-TGTGAAATTTTTCTTCTGATCTATCGTCACTCCT 273 consensus_452#1 CGAAGATTCGAAGATCATACCAAGGATGTCTTAAGTGTTGCCTTTTCTGTGGATAACCGT 300 ************************* *** * * * ** *** * * * * * consensus_452#0 CATGAAATATATGGAAGCTTTTTTTTTTTTTAATTTTTTTTTATTGAATGCTATTGGCAA 333 consensus_452#1 CAAATTGTCTCTGG----TTCTCGAGATAAAACAATTAAATTATGGAATACTTTAGCTGA 356 ** * * *** ** * * * ** **** **** ** * * * consensus_452#0 AAGATGTAACTGTATGAATGTTTAGGAATATACTGAAGCTTTTTTTTATATATTTTTTTT 393 consensus_452#1 ATGCAAGTATACTATTCAAGATGATGGGCACACAGACTGGGTCAGTTGTGTACGTTTTTC 416 * * * *** * * * * * * ** ** * ** * ** ***** consensus_452#0 TTTATATTTAATAAATAGAAGNGNNGGGCAATTAAATATATAGTATTGATGTCTTAAGTG 453 consensus_452#1 GCCAAACCATTCAAATCCCATTATTGTTTCTGCAGG------------------------ 452 * * **** * * * consensus_452#0 TTGCCTTTTCTATTTATTAAAAA 476 consensus_452#1 ----------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |