These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [ATGAACAAATTATTCTTGATAGAACTACATCTGGGAATCACATCATAGTAGCTCATCACAATCTGTTTTATAGCGTTCCTGTTAGAGCTCCTGATCGAGGCCGTATAACCGAAACCGAATTGGCCCAACAAATTTTAAAAATTATGGAAACTAAAGCTGATCCTCGAACTCCACCAGTTGGTATCCTTACAACGATGAAGAGACCAGCTTGGGCAAAGGCAAGGGAAGAATTACTTAAACGTACGTATTATTTTTAATTATAACTCTACTATTAATATAATTAATTAATTCAACAATAATGTTGATAAAATAATTACAATATCACAAATAAATGAAGCAAATAAAAATCTTTAAATAAAACAAGTTTATAAATTTTATTAAATATATTTATTATTTAAGTAATTTTAATTATTCATTTCCTCTCATTATTAAAAGAAGAATACATTTACGTTTATTTGCTCTTAATATTATGAACTAAATGAACACGTAAGTGAAAATGTGACTCATAGCATTTACAACCAGTTAAAGTAATCTCATTGCAAGTTTTCCAGCAACCCTTCCACCACGTACCCTTCTAGGCCATAATTAACGGCTGTTCTACTCTCGCCAATATTCGCAATATTCCCATTAGCCCCCTAACCCGATCTTACCCAACGA] [+] EMBL BI510088 [ATGAACAAATTATTCTTGATAGAACTACATCTGGGAATCACATCATAGTAGCTCATCACAATCTGTTTTATAGCGTTCCTGTTAGAGCTCCTGATCGAGGCCGTATAACCGAAACCGAATTGGCCCAACAAATTTTAAAAATTATGGAAACTAAAGCTGATCCTCGAACTCCACCAGTTGGTATCCTTACAACGATGAAGAGACCAGCTTGGGCAAAGGCAAGGGAAGAATTACTTAAACGTACGTATTATTTTTAATTATAACTCTACTATTAATATAATTAATTAATTCAACAATAATGTTGATAAAATAATTACAATATCACAAATAAATGAAGCAAATAAAAATCTTTAAATAAAACAAGTTTATAAATTTTATTAAATATATTTATTATTTAAGTAATTTTAATTATTCATTTCCTCTCATTATTAAAAGAAGAATACATTTACGTTTATTTGCTCTTAATATTATGAACTAAATGAACACGTAAGTGAAAATGTGACTCATAGCATTTACAACCAGTTAAAGTAATCTCATTGCAAGTTTTCCAGCAACCCTTCCACCACGTACCCTTCTAGGCCATAATTAACGGCTGTTCTACTCTCGCCAATATTCGCAATATTCCCATTAGCCCCCTAACCCGATCTTACCCAACGA] consensusID : consensus_460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [TAGTAGCTCATCACAATCTGTTTTATAGCGTTCCTGTTAGAGCTCCTGATCGAGGCCGTATAACCGAAACCGAATTGGCCCAACAAATTTTAAAAATTATGGAAACTAAAGCTGATCCTCGAACTCCACCAGTTGGTATCCTTACAACGATGAAGAGACCAGCTTGGGCAAAGGCAAGGGAAGAATTACTTAAACACGAACAAAATCGGCACAATTTGGAATTGTTGGAAAGATGTCTGTGCGTGGTGTGTATCGACGATGATATATTACCAGCGACGTTCAACAATCCTCTGAAGAAAGAGGATCGATGGATCGATAATCGAGATTACGCGAACGTACTTCATCACGTTCTTCATGGCGGAGGTTCCAGACATTTGGGCGCGAATCGATGGTTCGATAAAACATTCCACGCCATTCTCGGCAAGGACGGAATGTGGGGCATGAATTACGAACATTCGGCTGGCGAAGGTCCAGCGATTTTTATCACATTCGAGGAATTAACAGAGAAAGTCGATGCCATGTCACCACCCGAGGAAAACACCGTTCCATCGCATTTGCCTGCACCTGAAAAGCTCGAGTGGCATCTATCCGAACAAAGTTTTAGCGATATCAGAGATGCAATG] [+] EMBL BI506797 [TAGTAGCTCATCACAATCTGTTTTATAGCGTTCCTGTTAGAGCTCCTGATCGAGGCCGTATAACCGAAACCGAATTGGCCCAACAAATTTTAAAAATTATGGAAACTAAAGCTGATCCTCGAACTCCACCAGTTGGTATCCTTACAACGATGAAGAGACCAGCTTGGGCAAAGGCAAGGGAAGAATTACTTAAACACGAACAAAATCGGCACAATTTGGAATTGTTGGAAAGATGTCTGTGCGTGGTGTGTATCGACGATGATATATTACCAGCGACGTTCAACAATCCTCTGAAGAAAGAGGATCGATGGATCGATAATCGAGATTACGCGAACGTACTTCATCACGTTCTTCATGGCGGAGGTTCCAGACATTTGGGCGCGAATCGATGGTTCGATAAAACATTCCACGCCATTCTCGGCAAGGACGGAATGTGGGGCATGAATTACGAACATTCGGCTGGCGAAGGTCCAGCGATTTTTATCACATTCGAGGAATTAACAGAGAAAGTCGATGCCATGTCACCACCCGAGGAAAACACCGTTCCATCGCATTTGCCTGCACCTGAAAAGCTCGAGTGGCATCTATCCGAACAAAGTTTTAGCGATATCAGAGATGCAATG] consensusID : consensus_460#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [TTTTTTTTTTTTTTTATTGCCTTCTTTTATAGTTATGAATATTTTTCTTTCAAAGCTAATTCATCCTTTAATTGTCCGTTTATCTTTGATTCGCCTTGTTCAACATATCTGCCATATCCCTCAAGCTTTGTTCGAGCGTTTGAGCGAATCGTGTCGCGTTTGTTTTACCATCACTATGAAAAGCGGACACCGAAAATATGAAACCATTGCTTCTGAGATTATAAGCGCAACCATAACCATCTGGAACAACTGGCCCGTACCCGATGATGGCATCATTTTTCGAAGTTACCTGTGATGTCGAGAGAGCAAAGTGATTCACTATCTTGTAAGCTTGATCCGTGAAAATATCCGGAACCGGTTCTCCAACTTCCTGCGCGGCATAACGAAGGCCCATTAAATGGTTGTCAATTCCATAACCATTTATGTTATCGTTCATTTCCTTAGTTTGTCTCTGTACTGCTAGGTCGAATAATTCCTTGATTCTTTCTTGGCATCAAAAGATATCATTGCATCTCTGATATCGCTAAAACTTTGTTCGGATAGATG] [+] EMBL BI509038 [TTTTTTTTTTTTTTTATTGCCTTCTTTTATAGTTATGAATATTTTTCTTTCAAAGCTAATTCATCCTTTAATTGTCCGTTTATCTTTGATTCGCCTTGTTCAACATATCTGCCATATCCCTCAAGCTTTGTTCGAGCGTTTGAGCGAATCGTGTCGCGTTTGTTTTACCATCACTATGAAAAGCGGACACCGAAAATATGAAACCATTGCTTCTGAGATTATAAGCGCAACCATAACCATCTGGAACAACTGGCCCGTACCCGATGATGGCATCATTTTTCGAAGTTACCTGTGATGTCGAGAGAGCAAAGTGATTCACTATCTTGTAAGCTTGATCCGTGAAAATATCCGGAACCGGTTCTCCAACTTCCTGCGCGGCATAACGAAGGCCCATTAAATGGTTGTCAATTCCATAACCATTTATGTTATCGTTCATTTCCTTAGTTTGTCTCTGTACTGCTAGGTCGAATAATTCCTTGATTCTTTCTTGGCATCAAAAGATATCATTGCATCTCTGATATCGCTAAAACTTTGTTCGGATAGATG] consensusID : consensus_460#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [CAACTTACGAAAGCGCGGGTATTCGAAGATTCGCACTAGGAAGGGTTGATTGTATCAGAGCGGCCAGTCCCGAGGCTCTAAACTGGGCGAAAGCAATGTGCCAAGGGGATCCTGATAGTCAAACCGCCACTCAACAGAGCACTCAAGACGAAGGCACCAAAAGACAAGAAAGAATCAAGGAATTATTCGACCTAGCAGTACAGAGACAAACTAAGGAAATGAACGATAACATAAATGGTTATGGAATTGACAACCATTTAATGGGCCTTCGTTATGCCGCGCAGGAAGTTGGAGAACCGGTTCCGGATATTTTCACGGATCAAGCTTACAAGATAGTGAATCACTTTGCTCTCTCGACATCACAGGTAACTTCGAAAAATGATGCCATCATCGGGTACGGGCCAGTTGTTCCAGATGGTTATGGTTGCGCTTATAATCTCAGAAGCAATGGTTTCATATTTTCGGTGTCCGCTTTTCATAGTGATGGTAAAACAAACGCGACACGATTCGCTCAAACGCTCGAACAAAGCTTGAGGGATATGG] [+] EMBL BI506762 [CAACTTACGAAAGCGCGGGTATTCGAAGATTCGCACTAGGAAGGGTTGATTGTATCAGAGCGGCCAGTCCCGAGGCTCTAAACTGGGCGAAAGCAATGTGCCAAGGGGATCCTGATAGTCAAACCGCCACTCAACAGAGCACTCAAGACGAAGGCACCAAAAGACAAGAAAGAATCAAGGAATTATTCGACCTAGCAGTACAGAGACAAACTAAGGAAATGAACGATAACATAAATGGTTATGGAATTGACAACCATTTAATGGGCCTTCGTTATGCCGCGCAGGAAGTTGGAGAACCGGTTCCGGATATTTTCACGGATCAAGCTTACAAGATAGTGAATCACTTTGCTCTCTCGACATCACAGGTAACTTCGAAAAATGATGCCATCATCGGGTACGGGCCAGTTGTTCCAGATGGTTATGGTTGCGCTTATAATCTCAGAAGCAATGGTTTCATATTTTCGGTGTCCGCTTTTCATAGTGATGGTAAAACAAACGCGACACGATTCGCTCAAACGCTCGAACAAAGCTTGAGGGATATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_460#0 ATGAACAAATTATTCTTGATAGAACTACATCTGGGAATCACATCATAGTAGCTCATCACA 60 consensus_460#1 ---------------------------------------------TAGTAGCTCATCACA 15 consensus_460#2 ------------------------------------------------------------ consensus_460#3 ------------------------------------------------------------ consensus_460#0 ATCTGTTTTATAGCGTTCCTGTTAGAGCTCCTGATCGAGGCCGTATAACCGAAACCGAAT 120 consensus_460#1 ATCTGTTTTATAGCGTTCCTGTTAGAGCTCCTGATCGAGGCCGTATAACCGAAACCGAAT 75 consensus_460#2 ------------------TTTTTTTTTTTTTTTATTGCCTTCTTTTATAGTTATGAATAT 42 consensus_460#3 ---------------------------------------------CAACTTACGAAAGCG 15 * consensus_460#0 TGGCCCAACAAATTTTAAAAATTATGGAAACTAAAGCTGATCCTCGAACTCCACCAGTTG 180 consensus_460#1 TGGCCCAACAAATTTTAAAAATTATGGAAACTAAAGCTGATCCTCGAACTCCACCAGTTG 135 consensus_460#2 TTTTCTTTCAAAGCTAATTCATCCTTTAATTGTCCGTTTATCTTTGATTCGCCTTGTTCA 102 consensus_460#3 CGGGTATTCGAAG---ATTCGCACTAGGAAGGGTTGATTGTATCAGAGCGGC-CAGTCCC 71 * ** * * * * * * ** * consensus_460#0 GTATCCTTACAACGATGAAGAGACCAGCTTGGGCAAAGGCAAGGGAAGAATTACTTAAAC 240 consensus_460#1 GTATCCTTACAACGATGAAGAGACCAGCTTGGGCAAAGGCAAGGGAAGAATTACTTAAAC 195 consensus_460#2 ACATATCTGCCATATCCCTCA----AGCTTTGTTCGAGCGTTTGAGCGAATCGTGTCG-C 157 consensus_460#3 GAGGCTCTAAACTGGGCGAAAG---CAATGTGCCAAGGGGATCCTGATAGTCAAACCGCC 128 * * * * * * * * consensus_460#0 GTACGTATTATTTTTA-ATTATAACTCTACTATTAATATAATTAATTA-ATTCAACAATA 298 consensus_460#1 ACGAACAAAATCGGCACAATTTGGAATTGTTGGAAAGATGTCTGTGCGTGGTGTGTATCG 255 consensus_460#2 GTTTGTTTTACCATCACTATGAAAAGCGGACACCGAAAATATGAAAC--------CATTG 209 consensus_460#3 ACTCAACAGAGCACTCAAGACGAAGGCACCAAAAGACAAGAAAGAATCAAGGAATTATTC 188 * * * * consensus_460#0 ATGTTGATAAAATAATTACAATATC--ACAAATAAATGAA--GCAAATAAA--A-ATCTT 351 consensus_460#1 ACGATGATATATTACCAGCGACGTTCAACAATCCTCTGAA--GAAAGAGGATCG-ATGGA 312 consensus_460#2 CTTCTGAGATTATAAGCGCAACC----ATAACCATCTGGA--ACAACTGGCCCGTACCCG 263 consensus_460#3 GACCTAGCAGTACAGAGACAAAC-----TAAGGAAATGAACGATAACATAAATGGTTATG 243 * * * * * ** ** * ** consensus_460#0 TAAATAAAACAAGTT-TATAAATTTTATTAAATATATTTATTATTTAAGTAATTTTAATT 410 consensus_460#1 TCGATAATCGAGATTACGCGAACGTACTTCATCACGTTCTTCATGGCGGAGGTTCCAGAC 372 consensus_460#2 ATGATGGCATCATTT-TTCGAAGTTACCT-GTGATGTCGAGAGAGCAAAGTGATTCACTA 321 consensus_460#3 GAATTGACAACCATTTAATGGGCCTTCGTTATGCCGCGCAGGAAGTTGGAGAA-CCGGTT 302 * ** * * consensus_460#0 ATTCATTTCCT--CTCATTATTAAAAGAAGAATACATTTACGTTT---ATTTGCTCTTAA 465 consensus_460#1 ATTTGGGCGCGAATCGATGGTTCGATAAAACATTCCACGCCATTCTCGGCAAGGACGGAA 432 consensus_460#2 TCTTGTAAGCT------TGATCCGTGAAAATATCCGGAACCGGTT----CTCCAACTTCC 371 consensus_460#3 CCGGATATTTTCACGGATCAAGCTTACAAG-ATAGTGAATCACTT----TGCTCTCTCGA 357 * ** ** * * * consensus_460#0 TATTATGAACTAA--ATGAACAC---GTAAGTGAAAAT---GTGACTCATAGCATTTACA 517 consensus_460#1 TGTGGGGCATGAATTACGAACATTCGGCTGGCGAAGGTCCAGCGATTTTTATCACATTCG 492 consensus_460#2 TGCGCGGCATAACGAAGGCCCATTAAATGGTTGTCAATTCCATAACCATTTATGTTATCG 431 consensus_460#3 CATCACAGGTAACTTCGAAAAATGATGCCATCATCGGGTACGGGCCAGTTGTTCCAGATG 417 * * * consensus_460#0 ACCA--GTTAA---AGTAATCTCATTGCAAGTTTTCCAGCAACCCTTCCACCACGT-ACC 571 consensus_460#1 AGGA--ATTAACAGAGAAAGTCGATGCCATGTCACCACCCGAGGAAAACACCGTTCCATC 550 consensus_460#2 TTCA--TTTCC----TTAGTTTGTCTCTGTACTGCTAGGTCGAATAATTCCTTGAT--TC 483 consensus_460#3 GTTATGGTTGCGCTTATAATCTCAGAAGCAATGGTTTCATATTTTCGGTGTCCGCTTTTC 477 * ** * * consensus_460#0 CTTCTAGGCCATAATTAACGGCTGTTCTACTCTCGCCAATATTCGCAATATTCCCATTAG 631 consensus_460#1 GCATTTGCCTGCACCTGAAAA--GCTCGAGTGGCATCTATCCGAACAAAGTTTTAGCGAT 608 consensus_460#2 TTTCTTGGC----ATCAAAAGATATCATTGCATCTCTGATATCGCTAAAACTTTGTTCGG 539 consensus_460#3 ATAGTGATGGTAAAACAAACGCGACACGATTCGCTCAAACGCTCGAACAAAGCTTGAGGG 537 * * * * * consensus_460#0 CCCCCTAACCCGATCTTACCCAACGA 657 consensus_460#1 ATCAGAGATGCAATG----------- 623 consensus_460#2 ATAGATG------------------- 546 consensus_460#3 ATATGG-------------------- 543 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |