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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 993 fasta sequence
[ACTGCGGCGACAATTGAAATTGCAAGAGCAGGTGCATGCAGATCATCTTCAGGAAACGATCACGTTGAAGGAAGAAGAAGCGGAGAGGAATCTTCAACGTGCACTCAACGAGCAATCCGAGCAGGATAGTATAAAACACAAGGAACAACTCGCAGTTGTCATTGGAAGGCTACGTGGCGTTGAAGCTGCTTTTAAGGCTCGCATGGAGGAAGAAAAGGATGCAACCAACGCTCAGATTCTTTGGTCAGCTTGCACAGCCTTGGCACGTGCTATTAAATCAGGGCCACCAGGCGCACCCATAGAGAAAATCGTGAGGCCCTTGGAGTCGGAGATCAAGGCCGTCTGTAAAGCAGCACCGAAAGAAGATCCTTTAGTGATGGCTGCTATTAAAGGCATTCCTGTGGAAGCTGCCAAGAGGGGAGTATTCCCTGAGGACATTCTTCGTGAAAGGTTCCTCAAGGTGGAACAAGTGGCCAGACGATTGGCCATGGTGCCCGAGGAGGGCGCAGCACTGCCTGTTTATTTGCTAAGTTATCTTCAGAGCTATTTGATGTTCAAGGATGTCTGTCCCATCTCTCGTTCAGAACTCGAGGACAAACCTTTCGACGTGGAGGATCTTAATACATTCGATATACTGAATCGAGCCAGGTATTGGCTCGATCGTGGCGACTTCAAAATGACCCTTCGCTACATGAATCTTTTAAAGGGGGCGCCAAGATCGGTCGCCAAGGATTGGATGAACGAAACTAGAATCCTCCTCGAGACCCAACAAGTTGTGGAAACGCTGTTGGCGTATGCTGGTGCTATGGGCCTAATGTTCCTCGGCGCTGGAGATTCGAAGGTCAGTCGAAACGATTACAACAACAACAACAACAACAACAACAACAACAACAATAAAAAAACAAAGAATTGAAAAAACAACAAGAATATCAAAAGACACTACCTAGTAAACAAATTTTTGTATAGTTCACATTATAGTATATCCCTTTAAAA]
[+] EMBL BI506142 [ACTGCGGCGACAATTGAAATTGCAAGAGCAGGTGCATGCAGATCATCTTCAGGAAACGATCACGTTGAAGGAAGAAGAAGCGGAGAGGAATCTTCAACGTGCACTCAACGAGCAATCCGAGCAGGATAGTATAAAACACAAGGAACAACTCGCAGTTGTCATTGGAAGGCTACGTGGCGTTGAAGCTGCTTTTAAGGCTCGCATGGAGGAAGAAAAGGATGCAACCAACGCTCAGATTCTTTGGTCAGCTTGCACAGCCTTGGCACGTGCTATTAAATCAGGGCCACCAGGCGCACCCATAGAGAAAATCGTGAGGCCCTTGGAGTCGGAGATCAAGGCCGTCTGTAAAGCAGCACCGAAAGAAGATCCTTTAGTGATGGCTGCTATTAAAGGCATTCCTGTGGAAGCTGCCAAGAGGGGAGTATTCCCTGAGGACATTCTTCGTGAAAGGTTCCTCAAGGTGGAACAAGTGGCCAGACGATTGGCCATGGTGCCCGAGGAGGGCGCAGCACT ]
[+] EMBL BI515259 [ GAAGGAAGAAGAAGCGGAGAGGAATCTTCAACGTGCACTCAACGAGCAATCCGAGCAGGATAGTATAAAACACAAGGAACAACTCGCAGTTGTCATTGGAAGGCTACGTGGCGTTGAAGCTGCTTTTAAGGCTCGCATGGAGGAAGAAAAGGATGCAACCAACGCTCAGATTCTTTGGTCAGCTTGCACAGCCTTGGCACGTGCTATTAAATCAGGGCCACCAGGCGCACCCATAGAGAAAATCGTGAGGCCCTTGGAGTCGGAGATCAAGGCCGTCTGTAAAGCAGCACCGAAAGAAGATCCTTTAGTGATGGCTGCTATTAAAGGCATTCCTGTGGAAGCTGCCAAGAGGGGAGTATTCCCTGAG ]
[+] EMBL BI508638 [ TAGTGATGGCTGCTATTAAAGGCATTCCTGTGGAAGCTGCCAAGAGGGGAGTATTCCCTGAGGACATTCTTCGTGAAAGGTTCCTCAAGGTGGAACAAGTGGCCAGACGATTGGCCATGGTGCCCGAGGAGGGCGCAGCACTGCCTGTTTATTTGCTAAGTTATCTTCAGAGCTATTTGATGTTCAAGGATGTCTGTCCCATCTCTCGTTCAGAACTCGAGGACAAACCTTTCGACGTGGAGGATCTTAATACATTCGATATACTGAATCGAGCCAGGTATTGGCTCGATCGTGGCGACTTCAAAATGACCCTTCGCTACATGAATCTTTTAAAGGGGGCGCCAAGATCGGTCGCCAAGGATTGGATGAACGAAACTAGAATCCTCCTCGAGACCCAACAAGTTGTGGAAACGCTGTTGGCGTATGCTGGTGCTATGGGCCTAATGTTCCTCGGCGCTGGAGATTCGAAGGTCAGTCGAAACGATTACAACAACAACAACAACAACAACAACAACAACAACAATAAAAAAACAAAGAATTGAAAAAACAACAAGAATATCAAAAGACACTACCTAGTAAACAAATTTTTGTATAGTTCACATTATAGTATATCCCTTTAAAA]
consensusID : consensus_481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[GTTATCTTCAGAGCTATTTGATGTTCAAGGATGTCTGTCCCATCTCTCGTTCAGAACTCGAGGACAAACCTTTCGACGTGGAGGATCTTAATACATTCGATATACTGAATCGAGCCAGGTATTGGCTCGATCGTGGCGACTTCAAAATGACCCTTCGCTACATGAATCTTTTAAAGGGGGCGCCAAGATCGGTCGCCAAGGATTGGATGAACGAAACTAGAATCCTCCTCGAGACCCAACAAGTTGTGGAAACGCTGTTGGCGTATGCTGGTGCTATGGGCCTAATGTTCCTCGGCGCTGGAGATTCGAAGCAAAAAGAATAAAGCGGTAAAACCGACACAAATTGAACCCGACTTTCACCGGCCAGAATGCTCTCGTCCCTTCGTGAAATCTCGCGTCGACAAAAACCGAAAAAAAACCGGCCACAAAAAGCGAATGCAGTGAGAAATAATAAAAAAAAAAAAAAAAAGAAAGAGAGAGAAAAAAATTCGGAACAAAGCAAAAAAAAAAAA]
[+] EMBL BI510020 [GTTATCTTCAGAGCTATTTGATGTTCAAGGATGTCTGTCCCATCTCTCGTTCAGAACTCGAGGACAAACCTTTCGACGTGGAGGATCTTAATACATTCGATATACTGAATCGAGCCAGGTATTGGCTCGATCGTGGCGACTTCAAAATGACCCTTCGCTACATGAATCTTTTAAAGGGGGCGCCAAGATCGGTCGCCAAGGATTGGATGAACGAAACTAGAATCCTCCTCGAGACCCAACAAGTTGTGGAAACGCTGTTGGCGTATGCTGGTGCTATGGGCCTAATGTTCCTCGGCGCTGGAGATTCGAAGCAAAAAGAATAAAGCGGTAAAACCGACACAAATTGAACCCGACTTTCACCGGCCAGAATGCTCTCGTCCCTTCGTGAAATCTCGCGTCGACAAAAACCGAAAAAAAACCGGCCACAAAAAGCGAATGCAGTGAGAAATAATAAAAAAAAAAAAAAAAAGAAAGAGAGAGAAAAAAATTCGGAACAAAGCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_481#0 ACTGCGGCGACAATTGAAATTGCAAGAGCAGGTGCATGCAGATCATCTTCAGGAAACGAT 60
consensus_481#1 ------------------------------------------------------------
consensus_481#0 CACGTTGAAGGAAGAAGAAGCGGAGAGGAATCTTCAACGTGCACTCAACGAGCAATCCGA 120
consensus_481#1 ------------------------------------------------------------
consensus_481#0 GCAGGATAGTATAAAACACAAGGAACAACTCGCAGTTGTCATTGGAAGGCTACGTGGCGT 180
consensus_481#1 ------------------------------------------------------------
consensus_481#0 TGAAGCTGCTTTTAAGGCTCGCATGGAGGAAGAAAAGGATGCAACCAACGCTCAGATTCT 240
consensus_481#1 ------------------------------------------------------------
consensus_481#0 TTGGTCAGCTTGCACAGCCTTGGCACGTGCTATTAAATCAGGGCCACCAGGCGCACCCAT 300
consensus_481#1 ------------------------------------------------------------
consensus_481#0 AGAGAAAATCGTGAGGCCCTTGGAGTCGGAGATCAAGGCCGTCTGTAAAGCAGCACCGAA 360
consensus_481#1 ------------------------------------------------------------
consensus_481#0 AGAAGATCCTTTAGTGATGGCTGCTATTAAAGGCATTCCTGTGGAAGCTGCCAAGAGGGG 420
consensus_481#1 ------------------------------------------------------------
consensus_481#0 AGTATTCCCTGAGGACATTCTTCGTGAAAGGTTCCTCAAGGTGGAACAAGTGGCCAGACG 480
consensus_481#1 ------------------------------------------------------------
consensus_481#0 ATTGGCCATGGTGCCCGAGGAGGGCGCAGCACTGCCTGTTTATTTGCTAAGTTATCTTCA 540
consensus_481#1 --------------------------------------------------GTTATCTTCA 10
**********
consensus_481#0 GAGCTATTTGATGTTCAAGGATGTCTGTCCCATCTCTCGTTCAGAACTCGAGGACAAACC 600
consensus_481#1 GAGCTATTTGATGTTCAAGGATGTCTGTCCCATCTCTCGTTCAGAACTCGAGGACAAACC 70
************************************************************
consensus_481#0 TTTCGACGTGGAGGATCTTAATACATTCGATATACTGAATCGAGCCAGGTATTGGCTCGA 660
consensus_481#1 TTTCGACGTGGAGGATCTTAATACATTCGATATACTGAATCGAGCCAGGTATTGGCTCGA 130
************************************************************
consensus_481#0 TCGTGGCGACTTCAAAATGACCCTTCGCTACATGAATCTTTTAAAGGGGGCGCCAAGATC 720
consensus_481#1 TCGTGGCGACTTCAAAATGACCCTTCGCTACATGAATCTTTTAAAGGGGGCGCCAAGATC 190
************************************************************
consensus_481#0 GGTCGCCAAGGATTGGATGAACGAAACTAGAATCCTCCTCGAGACCCAACAAGTTGTGGA 780
consensus_481#1 GGTCGCCAAGGATTGGATGAACGAAACTAGAATCCTCCTCGAGACCCAACAAGTTGTGGA 250
************************************************************
consensus_481#0 AACGCTGTTGGCGTATGCTGGTGCTATGGGCCTAATGTTCCTCGGCGCTGGAGATTCGAA 840
consensus_481#1 AACGCTGTTGGCGTATGCTGGTGCTATGGGCCTAATGTTCCTCGGCGCTGGAGATTCGAA 310
************************************************************
consensus_481#0 GGTCAGTCGAAACGATTACAACAACAACAACAAC--AACAACAACAACAACAACAATAAA 898
consensus_481#1 GCAAAAAGAATAAAGCGGTAAAACCGACACAAATTGAACCCGACTTTCACCGGCCAGAAT 370
* * * * ** * * *** ** *** * ** * * * **
consensus_481#0 AAAACAAAGAATTGAAAAAA--------CAACAAGAATATCAAAAGACACTACC-TAGTA 949
consensus_481#1 GCTCTCGTCCCTTCGTGAAATCTCGCGTCGACAAAAACCGAAAAAAAACCGGCCACAAAA 430
** *** * **** ** **** * * ** * *
consensus_481#0 AACAAATTTTTGTATAGTTCACATTATAGTATATCCCTTTAAAA---------------- 993
consensus_481#1 AGCGAATGCAGTGAGAAATAATAAAAAAAAAAAAAAAAAGAAAGAGAGAGAAAAAAATTC 490
* * *** * * * * * * * * * ***
consensus_481#0 ----------------------
consensus_481#1 GGAACAAAGCAAAAAAAAAAAA 512
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |