These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [CGAAATCGACAGTCGGACGTGGTTCGGATCGCTGAGCGCGATCGTTTACCTGTGAACCGGCAACGAATCGGTGCTTGCGGTCAATGAAGTCACGTAAGAGCCGCGAGAAAAGTAAGTTCATCAATCATAAAGGCCGACTGTAGTGCCGCTCGAGTTTCCTCTCCGATAATCGGTGCAGGCCAAGTCGATACGTCGTGCCGTGGAAAGAGATCCTCCTTGAGACGAAGGGATTGACACGACAGCCCAGGCCCGAACACATCTCCCCCTTTATCGCGAAACCGTTCGTTGCGGTGTGTCAGTGCTAACAGCTGCCAAAGATGCAACGGCAAGGGGGTTCCACCGCCGGTGCCCTTGCCCTTGGCGGCAGGCACAAGCCGGAGGAGCTTTCCACATTGGCGNNNAACACCAGATTCTCGAGGAAGGAAATACAGCTTATCTATCGCGGTTTTAAGCAGGAGTGTCCCACGGGCCTCGTCGACGAGGAAGCTTTTAAACAGATCTTCTCACAGTTCTTCCCCCAAGNTGACGCTAGCCAGTATGCTCATTATGTCTTCAACACTATGAAGAGGAA] [+] EMBL BI509686 [CGAAATCGACAGTCGGACGTGGTTCGGATCGCTGAGCGCGATCGTTTACCTGTGAACCGGCAACGAATCGGTGCTTGCGGTCAATGAAGTCACGTAAGAGCCGCGAGAAAAGTAAGTTCATCAATCATAAAGGCCGACTGTAGTGCCGCTCGAGTTTCCTCTCCGATAATCGGTGCAGGCCAAGTCGATACGTCGTGCCGTGGAAAGAGATCCTCCTTGAGACGAAGGGATTGACACGACAGCCCAGGCCCGAACACATCTCCCCCTTTATCGCGAAACCGTTCGTTGCGGTGTGTCAGTGCTAACAGCTGCCAAAGATGCAACGGCAAGGGGGTTCCACCGCCGGTGCCCTTGCCCTTGGCGGCAGGCACAAGCCGGAGGAGCTTTCCACATTGGCGNNNAACACCAGATTCTCGAGGAAGGAAATACAGCTTATCTATCGCGGTTTTAAGCAGGAGTGTCCCACGGGCCTCGTCGACGAGGAAGCTTTTAAACAGATCTTCTCACAGTTCTTCCCCCAAGNTGACGCTAGCCAGTATGCTCATTATGTCTTCAACACTATGAAGAGGAA] consensusID : consensus_483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 543 fasta sequence [AACGAAATCGACAGTCGGACGTGGTTCGGATCGCTGAGCGCGATCGTTTACCTGTGAACCGGCAACGAATCGGTGCTTGCGGTCAATGAAGTCACGTAAGAGCCGCGAGAAAAGGGGTTCCACCGCCGGTGCCCTTGCCCTTGGCGGCAGGCACAAGCCGGAGGAGCTTTCCACATTGGCGGCCAACACCAGATTCTCGAGGAAGGAAATACAGCTTATCTATCGCGGTTTTAAGCAGGAGTGTCCCACGGGCCTCGTCGACGAGGAAGCTTTTAAACAGATCTTCTCACAGTTCTTCCCCCAAGGTGACGCTAGCCAGTATGCTCATTATGTCTTCAACACTATGAAGAGGAAACCGTCTGGAAAGATAAGCTTTGAAGAATTCTTGACTATTTTGTCGAAAGTTTCGAGAGGATCGGTAGAGGAAAAGCTGCAATGGATATTTGGACTTTACGATCTGGACGGTGATGGATTGATCAGTAAAGAGGAAATGTTGGATGTTGTTGGTTCGATTTATGAGATGTTGGGCCGTTACACTCAGCC] [+] EMBL BI511395 [AACGAAATCGACAGTCGGACGTGGTTCGGATCGCTGAGCGCGATCGTTTACCTGTGAACCGGCAACGAATCGGTGCTTGCGGTCAATGAAGTCACGTAAGAGCCGCGAGAAAAGGGGTTCCACCGCCGGTGCCCTTGCCCTTGGCGGCAGGCACAAGCCGGAGGAGCTTTCCACATTGGCGGCCAACACCAGATTCTCGAGGAAGGAAATACAGCTTATCTATCGCGGTTTTAAGCAGGAGTGTCCCACGGGCCTCGTCGACGAGGAAGCTTTTAAACAGATCTTCTCACAGTTCTTCCCCCAAGGTGACGCTAGCCAGTATGCTCATTATGTCTTCAACACTATGAAGAGGAAACCGTCTGGAAAGATAAGCTTTGAAGAATTCTTGACTATT ] [+] EMBL BI511450 [AACGAAATCGACAGTCGGACGTGGTTCGGATCGCTGAGCGCGATCGTTTACCTGTGAACCGGCAACGAATCGGTGCTTGCGGTCAATGAAGTCACGTAAGAGCCGCGAGAAAAGGGGTTCCACCGCCGGTGCCCTTGCCCTTGGCGGCAGGCACAAGCCGGAGGAGCTTTCCACATTGGCGGCCAACACCAGATTCTCGAGGAAGGAAATACAGCTTATCTATCGCGGTTTTAAGCAGGAGTGTCCCACGGGCCTCGTCGACGAGGAAGCTTTTAAACAGATCTTCTCACAGTT ] [+] EMBL BI510499 [ cgGGGGCATTTTAGGGGGTTCCACCGCCGGTGCCCTTGCCCTTGGCGGCAGGCACAAGCCGGAGGAGCTTTCCACATTGGCGGCCAACACCAGATTCTCGAGGAAGGAAATACAGCTTATCTATCGCGGTTTTAAGCAGGAGTGTCCCACGGGCCTCGTCGACGAGGAAGCTTTTAAACAGATCTTCTCACAGTTCTTCCCCCAAGGTGACGCTAGCCAGTATGCTCATTATGTCTTCAACACTATGAAGAGGAAACCGTCTGGAAAGATAAGCTTTGAAGAATTCTTGACTATTTTGTCGAAAGTTTCGAGAGGATCGGTAGAGGAAAAGCTGCAATGGATATTTGGACTTTACGATCTGGACGGTGATGGATTGATCAGTAAAGAGGAAATGTTGGATGTTGTTGGTTCGATTTATGAGATGTTGGGCCGTTACACTCAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_483#0 --CGAAATCGACAGTCGGACGTGGTTCGGATCGCTGAGCGCGATCGTTTACCTGTGAACC 58 consensus_483#1 AACGAAATCGACAGTCGGACGTGGTTCGGATCGCTGAGCGCGATCGTTTACCTGTGAACC 60 ********************************************************** consensus_483#0 GGCAACGAATCGGTGCTTGCGGTCAATGAAGTCACGTAAGAGCCGCGAGAAAAGTAAGTT 118 consensus_483#1 GGCAACGAATCGGTGCTTGCGGTCAATGAAGTCACGTAAGAGCCGCGAGAAAAG-GGGTT 119 ****************************************************** *** consensus_483#0 CATCAATCATAAAGGCCGACTGTAGTGCC--GCTCGAGTTTCCTCTCCGATAATCGGTGC 176 consensus_483#1 CCACCGCCGGTGCCCTTGCCCTTGGCGGCAGGCACAAGCCGGAGGAGCTTTCCACATTGG 179 * * * * * * * * * ** * ** * * * ** consensus_483#0 AGGCCAAGTCGATACGTCGTGCCGTGGAAAGAGATCCTCCTTGAGACGAAGGGATTGACA 236 consensus_483#1 CGGCCAACACCAGAT----TCTCGAGGAAGGAAATACAGCTTATCTATCGCGGTTTTAAG 235 ****** * * * * ** **** ** ** * *** ** ** * consensus_483#0 CGACAGCCCAGGCCCGAACACATCTCCCCCTTTATCGCGAAACCGTTCGTTGCGGTGTGT 296 consensus_483#1 CAGGAGTGTCCCACGGGCCTCGTCGACGAGGAAGCTTTTAAACAGATCTTCTCACAGTTC 295 * ** * * * * ** * **** * ** * * ** consensus_483#0 CAGTGCTAACA-GCTGCCAAAGATGCAACGGCAAGGGGGTTCCACCGCCGGTGCCCTTGC 355 consensus_483#1 TTCCCCCAAGGTGACGCTAGCCA-GTATGCTCATTATGTCTTCAACACTA-TGAAGAGGA 353 * ** * ** * * * * ** * * ** * * ** * consensus_483#0 CCTTGGCGGCAGGCACAAGCCG-GAGGAGCTTT---CCACATTGGCGNNNAACACCAGAT 411 consensus_483#1 AACCGTCTGGAAAGATAAGCTTTGAAGAATTCTTGACTATTTTGTCGAAAGTTTCGAGAG 413 * * * * * **** ** ** * * * * *** ** * *** consensus_483#0 TCTCGAGGAAGGAAATACAGCT-TATCTATCGCGGTTTTAAG--CAGGAGTGTCCCACGG 468 consensus_483#1 GATCGGTAGAGGAAAAGCTGCAATGGATATTTGGACTTTACGATCTGGACGGTGATGGAT 473 *** ****** * ** * *** * **** * * *** ** consensus_483#0 GCCTCGTCGACGAGGAAGCTTTTAAACAGATCTTCTCACAGTTCTTCCCCCAAGNTGACG 528 consensus_483#1 TGATCAGTAAAGAGGAAATGTT-----GGATGTTGTTG--GTTCGATTTATGAGATGTTG 526 ** * ****** ** *** ** * **** ** ** * consensus_483#0 CTAGCCAGTATGCTCATTATGTCTTCAACACTATGAAGAGGAA 571 consensus_483#1 --GGCCGTTACACTCAGCC------------------------ 543 *** ** **** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |