These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 638 fasta sequence [TTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAA-TCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTCTCAAGGATTAACAGACTTTTCTGCACATCTGGGATTTTCAGAAGATTCCAATTCACAAAATAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTTGTAACTGTTATTTGAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTGCACATTATAAAGTTATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTCATTTTTCATTTTATTCTATTTAATGAATATTTTTTCATTGAAGAAAAGATAATC] [+] EMBL BI510411 [TTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAA TCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTCTCAAGGA ] [+] EMBL BI505809 [ GTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAA TCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTCTCAAGGATTAACAGACTTTTCTGCACATCTGGGATTTTCAGAAGATTCCAATTCACAAAATAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTTGTAACTGTTATTTGAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTGCACATTATAAAGTTATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTTATTTTTCATTTTATTCTATTTAATGAATATTTTTTCATTGAAGAAAAGATAATC] [+] EMBL BI507053 [ GATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAANTCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTCTCAAGGATTAACAGACTTTTCTGCACATCTGGGATTTTCAGAAGATTCCAATTCACAAAATAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTTGTAACTGTTATTTGAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTGCACATTATAAAGTTATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTCATTTTTCATTTTATTCTATTTAATGAATATTTTTTCATTGAAGAAA ] consensusID : consensus_566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [CCCCTACCAGGCGTCGCGAACATATCGTCTTATTATGATTGTAATTCTTGTATTCTTGTTCTTAGTTTGAATTGAGTGTGTTTGCTATCTTATTGTAGAAATTTGCAACGACTGTCAGTTTCCTAACCTCTTTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCNNNCNGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGTAAATCTCTTAACATATTATAGATGCACGAGGAAATGTTGAAACGTTTCACAAAAAAAGCAAAGAATGTAGTAAATATGGATATCAAAAATGGATTAAAATTTTTCTTACTTGCGAGATTTAATAGAGATTTTGCATTACACATGTCAGCTGTAAACAGACTTTTGTAGTTATGAAATATTTCATGTGTGTTGATTGAGTAATATAGTGTTGTATGTCTGCTTTTTTAATAACAGTAAAGAAGGGAAAAGAAATGGGTTACAATCGGAGAAACTACTATGA] [+] EMBL BI506375 [CCCCTACCAGGCGTCGCGAACATATCGTCTTATTATGATTGTAATTCTTGTATTCTTGTTCTTAGTTTGAATTGAGTGTGTTTGCTATCTTATTGTAGAAATTTGCAACGACTGTCAGTTTCCTAACCTCTTTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCNNNCNGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGTAAATCTCTTAACATATTATAGATGCACGAGGAAATGTTGAAACGTTTCACAAAAAAAGCAAAGAATGTAGTAAATATGGATATCAAAAATGGATTAAAATTTTTCTTACTTGCGAGATTTAATAGAGATTTTGCATTACACATGTCAGCTGTAAACAGACTTTTGTAGTTATGAAATATTTCATGTGTGTTGATTGAGTAATATAGTGTTGTATGTCTGCTTTTTTAATAACAGTAAAGAAGGGAAAAGAAATGGGTTACAATCGGAGAAACTACTATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_566#0 ------------------------------------------------------------ consensus_566#1 CCCCTACCAGGCGTCGCGAACATATCGTCTTATTATGATTGTAATTCTTGTATTCTTGTT 60 consensus_566#0 ------------------------------------------------------------ consensus_566#1 CTTAGTTTGAATTGAGTGTGTTTGCTATCTTATTGTAGAAATTTGCAACGACTGTCAGTT 120 consensus_566#0 -----------TTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAAT 49 consensus_566#1 TCCTAACCTCTTTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAAT 180 ************************************************* consensus_566#0 ATATAATCACATAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAG 109 consensus_566#1 ATATAATCACATAACATGATGTCGCGGTCTGTGCNNNCNGAGACTCGTAGTCGTGCCAAG 240 ********************************** * ********************* consensus_566#0 GATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGG 169 consensus_566#1 GATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGTAAA-------- 292 ************************************************ *** consensus_566#0 GTTACAATCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGAT 229 consensus_566#1 -------TCTCTTAACATATTAT--AGATGCACGAGGAA------ATGTTGAAAC---GT 334 ** ** ** *** **** * * ** * ** ** * consensus_566#0 CAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGA 289 consensus_566#1 TTCACAAAAAAAGCAAAGAATGTAGTAAATATGGATATC------------AAAAATGGA 382 * ** **** *** * ** * * * * ** * **** **** consensus_566#0 TTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACT 349 consensus_566#1 TTAAAATTTTTC--TTACTTGCGAGATTTAATAGAGATTTTGCAT-TACACATGTCAGCT 439 *** * * ** ** * * * * * **** ** ** * * *** ** consensus_566#0 GTTAGTGATTCTCAAGGATTAACAGACTTTTC-TGCACATCTGG-GATTTTCAGAAGATT 407 consensus_566#1 GTAAACAGACTTTTGTAGTTATGAAATATTTCATGTGTGTTGATTGAGTAATATAGTGTT 499 ** * * *** * * **** ** * ** * * * ** consensus_566#0 CCAATTCACAAAATAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTT 467 consensus_566#1 GTATGTCTGCTTTTTTAATAACAGTAAAGAAGGGAAAAGAAATGGGTTACAATCGGAGAA 559 * ** * * ** * ** * * * * * *** * * consensus_566#0 GTAACTGTTATTTGAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTG 527 consensus_566#1 ACTACTATGA-------------------------------------------------- 569 *** * * consensus_566#0 CACATTATAAAGTTATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTCATT 587 consensus_566#1 ------------------------------------------------------------ consensus_566#0 TTTCATTTTATTCTATTTAATGAATATTTTTTCATTGAAGAAAAGATAATC 638 consensus_566#1 --------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |