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Apis mellifera
cluster # 572 cluster # 572       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_572#0 length = 561 sequences # 2  
consensus_572#1 length = 497 sequences # 2  

consensusID : consensus_572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 561
fasta sequence
                              [TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACACATGTACGTTTAAACGTGTTTGTATATTTTCCATGTATATAC]

[+] EMBL BI503018             [TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTAGCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACACATGTACGTTTAAACGTGTTTGTATATTTTCCATGTATATAC]
[+] EMBL BI504726             [TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTGCATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTTAAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATATATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATAAAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCATTTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACATATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGGTTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAAAAAAATACCATGTATATTGTATTTGACTCGCATGAAACA                                          ]


>consensus_572#0 TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTG CATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTT AAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATA TATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATA AAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCAT TTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACAT ATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGG TTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAA AAAAATACCATGTATATTGTATTTGACTCGCATGAAACACATGTACGTTTAAACGTGTTT GTATATTTTCCATGTATATAC



consensusID : consensus_572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 497
fasta sequence
                              [TTGTATAATTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGNNNTTTGCTGTAACTTAGATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGANNNATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAACGGNNGGATACAAATGGTGTGAATATTAAGGCGCTACTATTTTTTAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT]

[+] EMBL BI516446             [TTTTTTTTTTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGNNNTTTGCTGTAACTTAAATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGANNNATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAA                                                                                                   ]
[+] EMBL BI516508             [  GTATAATTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCATCAAGCGATATTCGCAAAACAGCCGGTGTTTGCTGTAACTTAGATAACAAATTGCAGATCACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGAAAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGAAAAAAATACATTCGTAATTAAAGAAGAATGAGAGTGAACAGTCAAAACATAACATTACGAAATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAACGGNNGGATACAAATGGTGTGAATATTAAGGCGCTACTATTTTTTAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT]


>consensus_572#1 TTGTATAATTTTTCTTTTACGCTTTGTATTGGAAAATCGTAAAGGATATATTCAATTTCA TCAAGCGATATTCGCAAAACAGCCGNNNTTTGCTGTAACTTAGATAACAAATTGCAGATC ACAGGTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCAAAAAGA AAACTATTGATAACCAAGTCTGATGCAAGGGCGACGGTTCTTCCTATTATTATAATAAAT ATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAACTGTATGAAGA AAAAAATACATTCGTAATTAAAGANNNATGAGAGTGAACAGTCAAAACATAACATTACGA AATAATTCGTAATGTAAAATATGTTGAAATTAGGAAAACGGNNGGATACAAATGGTGTGA ATATTAAGGCGCTACTATTTTTTAAACTAGTTATTTATGAACATTGAGAGAGCAGATAAT AGTGCGTGGGATGGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_572#0      TAAACTAGTTATTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAATGTTTG 60
consensus_572#1      TTGTATAATTTTTCTTTTACGCTTTGT-ATTGGAAAATCGTAAAGGATATATTCAATTTC 59
                     *    ** ** **  *  **  *  *  *   ** *** **    *  **      *** 

consensus_572#0      CATGAATAACAGGTGGCAGGTGTCGTAGCAAATTGTATAAAATTATTATTATACTAATTT 120
consensus_572#1      ATCAAGCGATATTCGCAAAACA--GCCGNNNTTTGCTGTAACTTAG-ATAACAA-ATTGC 115
                         *   * *   *  *      *  *    ***    ** ***  ** * *  * *  

consensus_572#0      AAAGTACAGTGTGAAAAATACATTTTTTTTTTTGGATATACTATATATTATATATATATA 180
consensus_572#1      AGATCACAG-GTGTGTATAAGTAGGTCAATTTTAAGTAAATTATATTTGAGACATACGCA 174
                     * *  **** ***   *  *     *   ****   ** * ***** * * * ***   *

consensus_572#0      TATGTATATATATATATACACACATATATATATATATATGCATATATATATATACATATA 240
consensus_572#1      AAAAGAAAACTATTGATAACCAAGTCTG---ATGCAAGGGCG-ACGGTTCTTCCTAT-TA 229
                      *   * *  ***  ***  **  * *    **  *   **  *    * *    ** **

consensus_572#0      AAAGAATATACATAAAATGAAATAGGAAATTTGAGTGCAGTTATGAAAAATTATTTTCAT 300
consensus_572#1      TTATAATAAATATAAACAGAATTACTAATTTATATCTTGCGAATTTAACAATGTATTCAA 289
                       * **** * *****  *** **  ** **  *        **  ** * * * **** 

consensus_572#0      TTAATTCTAGAAAAGAATTCTCTACATTATTTTTTGTCTAATATTTTTCATATCAAACAT 360
consensus_572#1      CTGTATGAAGAAAAAAATACATT-CGTAATTAAAGANNNATGAGAGTGAACAGTCAAAAC 348
                      *   *  ****** *** *  * * * ***        *  *   *  * *   ** * 

consensus_572#0      ATTTTCATTTATAAATTATAATTATTAATTAATACCAAGATATTCAGATTTGTTATTCGG 420
consensus_572#1      ATAAC--ATTACGAA--ATAATTCGTAATGTAAA---ATATGTTGAAATTAGGAAAACGG 401
                     **      ***  **  ******  ****  * *   * ** ** * *** *  *  ***

consensus_572#0      TTATTNNCAAAGTTTGCCATTTATATTTTTTATGGACTTTCTGCTTTGTTGAAGAAATAA 480
consensus_572#1      NNGGATACAAA---TGGTGTGAATAT----TAAGGCGCTACTATTTT-TTAAACTAGTTA 453
                            ****   **   *  ****    ** **   * **  *** ** **  * * *

consensus_572#0      AAAAATACCATGTATATTGTATTTGACT-CGCATGAAACACATGTACGTTTAAACGTGTT 539
consensus_572#1      TTTATGAACATTGAGAGAGCAGATAATAGTGCGTGGGATGGAAT---------------- 497
                        *  * ***  * *  * *  * *    ** **  *   *                  

consensus_572#0      TGTATATTTTCCATGTATATAC 561
consensus_572#1      ----------------------
                                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)