These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 583 fasta sequence [ATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATACATATATATACATATATATATTTTGACTTGTTCTTCCTTTCATCGAGTTGTTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATGTATATAT] [+] EMBL BI502908 [ATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATACATATATATACATATATATATTTTGACTTGTTCTTCCTTTCATCGAGTTGTTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATATATATA ] [+] EMBL BI510181 [ ATATTTTGACTTGTTCTTCCTTTCATCGAGTTGTTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATGTATATAT] consensusID : consensus_585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [GCGGAAATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCTTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATATATATA] [+] EMBL BI509055 [GCGGAAATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAATATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTTCTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACTCCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCTTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACTATCGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATATATATA] consensusID : consensus_585#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [CATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACAATCGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATATATA] [+] EMBL BI504445 [CATTGTACTCGGTTCAGCGTCGATTTAGAGATCGGTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGATATTAATATATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCGGTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTCGTTCCACAAACAATCGCATATATATATATATATATTTATATATATATATATATATATATATATATATATATATATATATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_585#1 GCGGAAATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAAT 60 consensus_585#2 ------------------------------------------------------------ consensus_585#0 ------ATAAATGGTACGCGCGTTTCTCTCGCGTTGGAACCGTGTGTTGCCACCGATAAT 54 consensus_585#1 ATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTT 120 consensus_585#2 ------------------------------------------------------------ consensus_585#0 ATATATATATATATAAAGAGAGAGAGAGAGAGAGAAATCGGTCGTTGGATCGTTGTGGTT 114 consensus_585#1 CTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACT 180 consensus_585#2 ------------------------------------------------------------ consensus_585#0 CTTCGACATTTCATTGAGTTGTTAATCTTCTTTGTTAATCTTTGTTAATTCTTGTTAACT 174 consensus_585#1 CCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCG 240 consensus_585#2 --------------------------CATTGTACTCGGTTCAGCGTCGATTTAGAGATCG 34 consensus_585#0 CCATAGTTTTTTATTTATTCGCCGTTCATTGTACTCGGTTCAGCGTCGATTTAGAGATCG 234 ********************************** consensus_585#1 GTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATA-------- 292 consensus_585#2 GTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGA 94 consensus_585#0 GTGAGATGAATGTCTAGGAAATTTTTAATTACGAATAATACGAGTATATATAAAGTCCGA 294 **************************************************** consensus_585#1 ------------------------------------------------------------ consensus_585#2 TATTAATATATATA---------------------------------------------- 108 consensus_585#0 TATTAATATATATATACATATATATACATATATATATTTTGACTTGTTCTTCCTTTCATC 354 consensus_585#1 ------------------------------------------------------------ consensus_585#2 ------------------------------------------------------------ consensus_585#0 GAGTTGTTTCAACAAAATAAAATCGTTTATCACCGATTGAATTCTACGTATATATATGTA 414 consensus_585#1 ------TTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCG 346 consensus_585#2 ------TTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCG 162 consensus_585#0 TATATATTATATTAATTAAATAAAACTCGATCAATCGAGCGTTGAATCGACGCGGAATCG 474 ****************************************************** consensus_585#1 GTTTCTCGCCATCGAAACACGCTCGAGAACGCTTGTCCACGTACGTGCGCGCGCGCGCTC 406 consensus_585#2 GTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTC 222 consensus_585#0 GTTTCTCGCCATCGAAACACGCTCGAGAACGCGTGTCCACGTACGTGCGCGCGCGCGCTC 534 ******************************** *************************** consensus_585#1 GTTCCACAAACTATCGCATATATATATATATATATTTATATATATATATATATATATATA 466 consensus_585#2 GTTCCACAAACAATCGCATATATATATATATATATTTATATATATATATATATATATATA 282 consensus_585#0 GTTCCACAAACTATCGCATATATATATATATATATTTATATGTATATAT----------- 583 *********** ***************************** ******* consensus_585#1 TATATATATATATATATATATATA 490 consensus_585#2 TATATATATATATATATATATA-- 304 consensus_585#0 ------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |