These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [ACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGATTGATACCTGGAAAAAGAAAATTGGAAATTCGAATGGATTGATTACATTGTTATTCAGAGATCCAGCGATAGATAGGGACGAAACAATATTTGGTAAGAGACGATACGAAACGATAAGCGAGAGATTATTATTACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTGCTGTGGGAGTACGGGGGTGGCGGTGGAGCGGAAGCCGGTGTGTGACCCCCGAATCCGGGAGCAGAACCTCCACGGCCCAGGATAGCGTAAGCCGATGGTAAATGATGGGCCCCCAATCCATATCCGCCCGGCATACCGCCGAAAAGCGACGAAGCTGCACTGTCGCTCCGAGGCCAATACGCTGCAATCAAAACCGAACCGACCATGTTCAATTACTACGTGTGGCTCGCGCAACGCGGGAGGAACGTTATTATATCGTTCATTCCTCCTTTCCAAAATATAAACTTCGATCGAACTAGTGTAAAATATATATATGATGTTGCAGATTTTCTCGATTGATGATATTCGTGTATTCGACGAGTGTAAATTTGAATAAATTTATGATCTATAAAAATGT] [+] EMBL BI509771 [ACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGATTGATACCTGGAAAAAGAAAATTGGAAATTCGAATGGATTGATTACATTGTTATTCAGAGATCCAGCGATAGATAGGGACGAAACAATATTTGGTAAGAGACGATACGAAACGATAAGCGAGAGATTATTATTACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTGCTGTGGGAGTACGGGGGTGGCGGTGGAGCGGAAGCCGGTGTGTGACCCCCGAATCCGGGAGCAGAACCTCCACGGCCCAGGATAGCGTAAGCCGATGGTAAATGATGGGCCCCCAATCCATATCCGCCCGGCATACCGCCGAAAAGCGACGAAGCTGCACTGTCGCTCCGAGGCCAATACGCTGCAATCAAAACCGAACCGACCATGTTCAATTACTACGTGTGGCTCGCGCAACGCGGGAGGAACGTTATTATATCGTTCATTCCTCCTTTCCAAAATATAAACTTCGATCGAACTAGTGTAAAATATATATATGATGTTGCAGATTTTCTCGATTGATGATATTCGTGTATTCGACGAGTGTAAATTTGAATAAATTTATGATCTATAAAAATGT] consensusID : consensus_603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [TCGTATTTTTTCGGTGATTGTTGTTGTCGTTTTTCTTTTTTTTTCCTTTCTCTCTCTTTGTTTGTTTTTGTTGTTCATTCTTAACGATCTCTCACCTGCCCTCTTTCGCAGAACTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGAGAGGACGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTAGACTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGATTGATACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTGCTGTGGGAGTACGGG] [+] EMBL BI509674 [TCGTATTTTTTCGGTGATTGTTGTTGTCGTTTTTCTTTTTTTTTCCTTTCTCTCTCTTTGTTTGTTTTTGTTGTTCATTCTTAACGATCTCTCACCTGCCCTCTTTCGCAGAACTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGAGAGGACGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTAGACTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGATTGATACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTGCTGTGGGAGTACGGG] consensusID : consensus_603#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence [CCTCTTTCGCAGAACTGTAGGCGTATCGGCAAGCGTGGAAAAATAATTAATGGGAAACGGTAAGTGCGATGCGGACTGACGGGGTTAGCGTCAGTTAAAAAAATAATGAAAAAAAAAAAAAAANNNNGGAAAGACCATCGATTTAACGAGCATCGCGCACTCCTTTACCTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGNNNNNNCGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTNNNCTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTNGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGA] [+] EMBL BI509774 [CCTCTTTCGCAGAACTGTAGGCGTATCGGCAAGCGTGGAAAAATAATTAATGGGAAACGGTAAGTGCGATGCGGACTGACGGGGTTAGCGTCAGTTAAAAAAATAATGAAAAAAAAAAAAAAA ACGGGAAAGACCATCGATTTAACGAGCATCGCGCACTCCTTTACCTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGAGAAGACGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTNNNCTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGA] [+] EMBL BI506062 [ GAACTGTAGGCGTATCGGCAAGCGTGGAAAAATAATTAATGGGAAACGGTAAGTGCGATGCGGACTGACGGGGTTAGCGTCAGTTAAAAAAATAATGAAAAAAAAAAAAAAANNNNGGAAAGACCATCGATTTAACGAGCATCGCGCACTCCTTTACCTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGACGTGCTGTGATGNNNNNNCGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGTCATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTTNNNCTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGGTGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCTCGCGAGGTNGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCGCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_603#1 ------------------------------------------------------------ consensus_603#2 -----------------------CCTCTTTCGCAGAACTGTAGGCGTATCGGCAAGCGTG 37 consensus_603#0 ACCTCGCGAGGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTCG 60 consensus_603#1 -------------------TCGTATTTTTTCGGTGATTGTTGTTGTCGT-TTTTCTTTTT 40 consensus_603#2 GAAAAATAATTAATGGGAAACG-GTAAGTGCGATGCGGACTGACGGGGT-TAGCGTCAGT 95 consensus_603#0 CTGGATTGATACCTGGAAAAAGAAAATTGGAAATTCGAATGGATTGATTACATTGTTATT 120 * * * * * * consensus_603#1 TTTTCCTTTCTCTCTCTTT--GTTTGTTTTTGTTGTTCATTCTTAACGATCTCTC-ACCT 97 consensus_603#2 TAAAAAAATAATGAAAAAA--AAAAAAAAANNNNGGAAAGACC-ATCGATTTAACGAGCA 152 consensus_603#0 CAGAGATCCAGCGATAGATAGGGACGAAACAATATTTGGTAAGAGACGATACGAAACGAT 180 **** consensus_603#1 GCCCTCTTTCGCAGAACTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGA 157 consensus_603#2 TCGCGCACTCCTTTACCTGACAACGTTCGTTTGGGAATTCGGCGTGGTGCTCGCCGACGA 212 consensus_603#0 AAGCGAGAGATTATTATTACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACC 240 * * * * *** * * * * **** * consensus_603#1 CGTGCTGTGATGAGAGGACGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGT 217 consensus_603#2 CGTGCTGTGATGNNNNNNCGTGACCGGCGCTTGGGTCGAGACCGGTAAACTGCTGCTCGT 272 consensus_603#0 AAGGCTGCTGTGGGAGTACGGGGGTGGCGGTGGAGCGGAAGCCGGTGTGTGACCCCCGAA 300 **** ** ** * **** * * * ** ***** * * consensus_603#1 CATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTT 277 consensus_603#2 CATGCTTGGCGTCGTCGAGCTGCTACTGCTCGCGGGAGTCTTGTGACTCTTGCTTGACTT 332 consensus_603#0 TCCGGGAGCAGAACCTCCACGGCCCAGGATAGCGTAAGCCG-ATGGTAAATGATGGGCCC 359 * * * * ** * * *** ** * ** ** * * * consensus_603#1 AGACTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGG 337 consensus_603#2 NNNCTTACTGGACTTGTGGGACGACAAGGACGGGGGATTAAGTAGCGAGGCAGGATACGG 392 consensus_603#0 CCAATCCATATCCGCCCGGCATACCGCCGAAAAGCGACGAAGCTGCACTGTCGC-TCCGA 418 * * * ** * * ** * ** *** ** * * * ** consensus_603#1 TGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCT 397 consensus_603#2 TGGCAGGAGGCTCTCGGCGCCAGGGGGGAATCCGGGCAATCCTGCCGCTCCTTGTAACCT 452 consensus_603#0 GGCCAATACGCT---GCAATCAAAACCGAACCGACCATGTTCAATTACTACGTGTGGCTC 475 * ** * *** * ** *** * * * ** * *** * consensus_603#1 -CGCGA----GGTAGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTC 452 consensus_603#2 -CGCGA----GGTNGTCCTGTGCCGCTAAGTGTGAGGCCATCGTCCACCATGCTGCACTC 507 consensus_603#0 GCGCAACGCGGGAGGAACGTTATTATATCGTTCATTCCTCCTTTCCAAAATATAAACTTC 535 *** * ** * * * ** * **** ** ** consensus_603#1 GCTGGATTGATACCTAAACTCGCGGCCTGACTGGCAGCCACGCTCAGAGTACCAAGGCTG 512 consensus_603#2 GCTGGA------------------------------------------------------ 513 consensus_603#0 GATCGAACTAGTGTAAAATATATATATGATGTTGCAGATTTTCTCGATTGATGATATTCG 595 * * ** consensus_603#1 CTGTGGGAGTACGGG---------------------------------- 527 consensus_603#2 ------------------------------------------------- consensus_603#0 TGTATTCGACGAGTGTAAATTTGAATAAATTTATGATCTATAAAAATGT 644 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |