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Apis mellifera
cluster # 607 cluster # 607       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_607#0 length = 842 sequences # 2  
consensus_607#1 length = 385 sequences # 1  
consensus_607#2 length = 270 sequences # 1  

consensusID : consensus_607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 842
fasta sequence
                              [ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCAATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAATTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATTATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGNAAGATTGTTAATATCTCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACGTAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGGTCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAGAATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCTTTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTTATGGAAA]

[+] EMBL BI503037             [ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCAATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAATTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATTATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGNAAGATTGTTAATATCTCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAA                                                                                                                                                                                                                                                               ]
[-] EMBL BI509324             [                                                                                                                                                                                                                             TCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGAAAGATTGTTAATATCTCTGTCCGTTAAAGGTGCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACGTAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGGTCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAGAATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCTTTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTTATGGAAA]


>consensus_607#0 ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCA ATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAA TTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATT ATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGAT TTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATA ATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATC TACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAA TGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGNAAGAT TGTTAATATCTCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTACAATGG AATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACGTAAAT TCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGGTCTGT TCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAGAATAA ATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCTTTCTC TGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTTATGGA AA



consensusID : consensus_607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence
                              [ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGTCAGTGATGGTTATTGTAATTCTAGAATTATTAAATTCAATGCTAAAGGAGAAATAATTTTGCAATGGGGTCGGCATTGGAAAATGGATGGAAACACATATGATTTAACTTATCTTTCATCAAATGTATTCAATATACCTCATGCTTTAGCACTTGCTAGTGAATTGAATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATGGAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCATATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT]

[+] EMBL BI516365             [ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGTCAGTGATGGTTATTGTAATTCTAGAATTATTAAATTCAATGCTAAAGGAGAAATAATTTTGCAATGGGGTCGGCATTGGAAAATGGATGGAAACACATATGATTTAACTTATCTTTCATCAAATGTATTCAATATACCTCATGCTTTAGCACTTGCTAGTGAATTGAATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATGGAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCATATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT]


>consensus_607#1 ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGTCAGTGA TGGTTATTGTAATTCTAGAATTATTAAATTCAATGCTAAAGGAGAAATAATTTTGCAATG GGGTCGGCATTGGAAAATGGATGGAAACACATATGATTTAACTTATCTTTCATCAAATGT ATTCAATATACCTCATGCTTTAGCACTTGCTAGTGAATTGAATTTACTTTTTCTTGCTGA TAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATGGAACTTTCCATAAGGAATA TAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCATATGCCAGAGAAAGACTTTA TTTGGTTAATGGTCCTGATCCAAAT



consensusID : consensus_607#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence
                              [CTGAACACTTGATTCAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGCTGTTGTAGTACCTCGGCCGCGACCACNCTANNANNGGA]

[+] EMBL BG101577             [CTGAACACTTGATTCAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGCTGTTGTAGTACCTCGGCCGCGACCACNCTANNANNGGA]


>consensus_607#2 CTGAACACTTGATTCAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAA ATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCAT ACTGAAACAATCTACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATAC AGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGCTGTTGTAG TACCTCGGCCGCGACCACNCTANNANNGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_607#0      ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCA 60
consensus_607#2      ------------------------------------------------------------
consensus_607#1      ------------------------------------------------------------
                                                                                 

consensus_607#0      ATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAA 120
consensus_607#2      ------------------------------------------------------------
consensus_607#1      ------------------------------------------------------------
                                                                                 

consensus_607#0      TTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATT 180
consensus_607#2      ------------------------------------------------------------
consensus_607#1      ------------------------------------------------------------
                                                                                 

consensus_607#0      ATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGAT 240
consensus_607#2      -----------------------------------------------CTGAACACTTGAT 13
consensus_607#1      ------ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGT 54
                                                                     ***    **  *

consensus_607#0      TTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATA 300
consensus_607#2      T-CAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATA 72
consensus_607#1      --CAGTGATGGTTATTGTAATTCTAGAATTATTAA-ATTCAATGCTAAAGGAG--AAATA 109
                       *  * *   * ***   ** *  * ** * **  ******  * ***  **  *****

consensus_607#0      ATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATC 360
consensus_607#2      ATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATC 132
consensus_607#1      ATT-TTGCAATGGGGTCGGCATTGGAAAATGGAT-GGAAACACATA----TGATTTAACT 163
                     *** **   **  *    *  ***  ** *  *  * * *  ***     ***   **  

consensus_607#0      TACCTCTTTTTTGACATCTTGCTACAA--CTGCAGCAATTGC-TATACAGAGAGCAATAA 417
consensus_607#2      TACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAA 192
consensus_607#1      TATCTTTCATCAAATGTATT-CAATATACCTCATGCTTTAGCACTTGCT-AGTGAATTGA 221
                     ** ** *  *   *  * ** * *     **   **  * **   * *  ** * * * *

consensus_607#0      AAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGC-TGTTGTAGTACCTCCAGNA 476
consensus_607#2      AAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGC-TGTTGTAGTACCTCGGCCG 251
consensus_607#1      ATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATG 281
                     *  *   *  *  **     ** ** **   **  ***   * ** *  * *  *     

consensus_607#0      AGATTGTTAATATC-TCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTAC 535
consensus_607#2      CGACCACNC-TANN-ANNGGA--------------------------------------- 270
consensus_607#1      GAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCAT 341
                       *       **                                                

consensus_607#0      AATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACG 595
consensus_607#2      ------------------------------------------------------------
consensus_607#1      ATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT---------------- 385
                                                                                 

consensus_607#0      TAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGG 655
consensus_607#2      ------------------------------------------------------------
consensus_607#1      ------------------------------------------------------------
                                                                                 

consensus_607#0      TCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAG 715
consensus_607#2      ------------------------------------------------------------
consensus_607#1      ------------------------------------------------------------
                                                                                 

consensus_607#0      AATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCT 775
consensus_607#2      ------------------------------------------------------------
consensus_607#1      ------------------------------------------------------------
                                                                                 

consensus_607#0      TTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTT 835
consensus_607#2      ------------------------------------------------------------
consensus_607#1      ------------------------------------------------------------
                                                                                 

consensus_607#0      ATGGAAA 842
consensus_607#2      -------
consensus_607#1      -------
                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)