These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 842 fasta sequence [ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCAATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAATTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATTATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGNAAGATTGTTAATATCTCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACGTAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGGTCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAGAATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCTTTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTTATGGAAA] [+] EMBL BI503037 [ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCAATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAATTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATTATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGNAAGATTGTTAATATCTCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAA ] [-] EMBL BI509324 [ TCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGAAAGATTGTTAATATCTCTGTCCGTTAAAGGTGCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACGTAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGGTCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAGAATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCTTTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTTATGGAAA] consensusID : consensus_607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGTCAGTGATGGTTATTGTAATTCTAGAATTATTAAATTCAATGCTAAAGGAGAAATAATTTTGCAATGGGGTCGGCATTGGAAAATGGATGGAAACACATATGATTTAACTTATCTTTCATCAAATGTATTCAATATACCTCATGCTTTAGCACTTGCTAGTGAATTGAATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATGGAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCATATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT] [+] EMBL BI516365 [ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGTCAGTGATGGTTATTGTAATTCTAGAATTATTAAATTCAATGCTAAAGGAGAAATAATTTTGCAATGGGGTCGGCATTGGAAAATGGATGGAAACACATATGATTTAACTTATCTTTCATCAAATGTATTCAATATACCTCATGCTTTAGCACTTGCTAGTGAATTGAATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATGGAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCATATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT] consensusID : consensus_607#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [CTGAACACTTGATTCAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGCTGTTGTAGTACCTCGGCCGCGACCACNCTANNANNGGA] [+] EMBL BG101577 [CTGAACACTTGATTCAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGCTGTTGTAGTACCTCGGCCGCGACCACNCTANNANNGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_607#0 ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCA 60 consensus_607#2 ------------------------------------------------------------ consensus_607#1 ------------------------------------------------------------ consensus_607#0 ATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAA 120 consensus_607#2 ------------------------------------------------------------ consensus_607#1 ------------------------------------------------------------ consensus_607#0 TTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATT 180 consensus_607#2 ------------------------------------------------------------ consensus_607#1 ------------------------------------------------------------ consensus_607#0 ATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGAT 240 consensus_607#2 -----------------------------------------------CTGAACACTTGAT 13 consensus_607#1 ------ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGT 54 *** ** * consensus_607#0 TTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATA 300 consensus_607#2 T-CAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATA 72 consensus_607#1 --CAGTGATGGTTATTGTAATTCTAGAATTATTAA-ATTCAATGCTAAAGGAG--AAATA 109 * * * * *** ** * * ** * ** ****** * *** ** ***** consensus_607#0 ATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATC 360 consensus_607#2 ATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATC 132 consensus_607#1 ATT-TTGCAATGGGGTCGGCATTGGAAAATGGAT-GGAAACACATA----TGATTTAACT 163 *** ** ** * * *** ** * * * * * *** *** ** consensus_607#0 TACCTCTTTTTTGACATCTTGCTACAA--CTGCAGCAATTGC-TATACAGAGAGCAATAA 417 consensus_607#2 TACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAA 192 consensus_607#1 TATCTTTCATCAAATGTATT-CAATATACCTCATGCTTTAGCACTTGCT-AGTGAATTGA 221 ** ** * * * * ** * * ** ** * ** * * ** * * * * consensus_607#0 AAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGC-TGTTGTAGTACCTCCAGNA 476 consensus_607#2 AAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGC-TGTTGTAGTACCTCGGCCG 251 consensus_607#1 ATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATG 281 * * * * ** ** ** ** ** *** * ** * * * * consensus_607#0 AGATTGTTAATATC-TCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTAC 535 consensus_607#2 CGACCACNC-TANN-ANNGGA--------------------------------------- 270 consensus_607#1 GAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCAT 341 * ** consensus_607#0 AATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACG 595 consensus_607#2 ------------------------------------------------------------ consensus_607#1 ATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT---------------- 385 consensus_607#0 TAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGG 655 consensus_607#2 ------------------------------------------------------------ consensus_607#1 ------------------------------------------------------------ consensus_607#0 TCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAG 715 consensus_607#2 ------------------------------------------------------------ consensus_607#1 ------------------------------------------------------------ consensus_607#0 AATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCT 775 consensus_607#2 ------------------------------------------------------------ consensus_607#1 ------------------------------------------------------------ consensus_607#0 TTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTT 835 consensus_607#2 ------------------------------------------------------------ consensus_607#1 ------------------------------------------------------------ consensus_607#0 ATGGAAA 842 consensus_607#2 ------- consensus_607#1 ------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |