These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 718 fasta sequence [AATCGAAGTTGTAAAAGGTGTTAAACTAATACAAGAATGTGTGCCAGAAAATTTACCATTAAAACTTAAACTTTATAATGAACTCGATAACTTAGTTGATGATAAAGTTATTTTATCTTCTTCAACATCTACTTTTCGTCCCTCTTTATTAAGCGAAAATTTAAAACATCGTGAACAAGTTATTGTATCACACCCGGTAAATCCTCCGTATTATGTACCACTTGTAGAAATTGTGCCAGCTCCTTGGACTCGTGCTGAAATACCATTGCAAGTGAAAGCTATTATGACTGAAATAGGTCAAACACCTGTTGTACTAACTAGAGAAATTGATGGTTTTGTGCTTAATCGAATACAATATGCAATTTTAAATGAAGCATGGAGATTAGTTGCTGACGGAATATTAAATGCGAAAGATGTAGACGCAGTTATGAGTGAAGGTCTTGGAATGCGATATGCATTTCTTGGTGCATTTGAAGCGGCGCATTTAAATGCAGAAGGAATGAAAAAATATTGTGAAACATATAAAAACTCAATTTATGATGTAAGTATGACATTTGGTCCAGTTCCTAAATNNNNGGGAGAAATGGCAGAAAAAATTAGCAATGAATTAAATGAGATGTGTCCATTAGAAAAATTAAAAGANAGACGTATATGGAGAGATGATGCTTTGACAAAATTATCTTTATTAAAAAAAAGAATTGAATAAGGAAAAAAAAAN] [+] EMBL BI513665 [AATCGAAGTTGTAAAAGGTGTTAAACTAATACAAGAATGTGTGCCAGAAAATTTACCATTAAAACTTAAACTTTATAATGAACTCGATAACTTAGTTGATGATAAAGTTATTTTATCTTCTTCAACATCTACTTTTCGTCCCTCTTTATTAAGCGAAAATTTAAAACATCGTGAACAAGTTATTGTATCACACCCGGTAAATCCTCCGTATTATGTACCACTTGTAGAAATTGTGCCAGCTCCTTGGACTCGTGCTGAAATACCATTGCAAGTGAAAGCTATTATGACTGAAATAGGTCAAACACCTGTTGTACTAACTAGAGAAATTGATGGTTTTGTGCTTAATCGAATACAATATGCAATTTTAAATGAAGCATGGAGATTAGTTGCTGACGGAATATTAAATGCGAAAGATGTAGACGCAGTTATGAGTGAAGGTCTTGGAATG ] [+] EMBL AF134818 [ TTGATGGTTTTGTGCTTAATCGAATACAATATGCAATTTTAAATGAAGCATGGAGATTAGTTGCTGACGGAATATTAAATGCGAAAGATGTAGACGCAGTTATGAGTGAAGGTCTTGGAATGCGATATGCATTTCTTGGTGCATTTGAAGCGGCGCATTTAAATGCAGAAGGAATGAAAAAATATTGTGAAACATATAAAAACTCAATTTATGATGTAAGTATGACATTTGGTCCAGTTCCTAAATTTGAGGGAGAAATGGCAGAAAAAATTAGCAATGAATTAAATGAGATGTGTCCATTAGAAAAATTAAAAGAAAGACGTATATGGAGAGATGATGCTTTGACAAAATTATCTTTATTAAAAAAAAGAATTGAATAAGGAAAAAAAAAN] [+] EMBL BG101559 [ TTGATGGTTTTGTGCTTAATCGAATACAATATGCAATTTTAAATGAAGCATGGAGATTAGTTGCTGACGGAATATTAAATGCGAAAGATGTAGACGCAGTTATGAGTGAAGGTCTTGGAATGCGATATGCATTTCTTGGTGCATTTGAAGCGGCGCATTTAAATGCAGAAGGAATGAAAAAATATTGTGAAACATATAAAAACTCAATTTATGATGTAAGTATGACATTTGGTCCAGTTCCTAAATNNNNCGGAGAAATGGCCCAAAAAATTAGCAATGAATTAAATGAGATGTGTCCATTAGAAAAATTAAAAGANAGACGTATATGGAGAGATGATGCTTTGACAAAATTATCTTT ] consensusID : consensus_612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [NCNCGGAGNNCCAATCGANNACNAACAANGCAACCNCAANACGCTGCCACGGGAGANNATGTTGCNGACGGAANANTAAANGCCGAAAGATGTAGACGCCAGTTATGAGTGAAGGTCTTGGAATGCGATATGCATTTCTTGGTGCATTTGAAGCGGCGCATTTAAATGCAGAAGGAATGAAAAAATATTGTGAAACATATAAAAACTCAATTTATGATGTAAGTATGACATTTGGTCCAGTTCCTAAATTNNNCGGAGAAATGGCCCAAAAAATTAGCAATGAATTAAATGAGATGTGTCCATTAGAAAAATTAAAAGAAAGACGTATATGGAGAGATGATGCTTTGACAAAATTATCTTTATTAAAAAAAAGAATT] [+] EMBL BG101600 [NCNCGGAGNNCCAATCGANNACNAACAANGCAACCNCAANACGCTGCCACGGGAGANNATGTTGCNGACGGAANANTAAANGCCGAAAGATGTAGACGCCAGTTATGAGTGAAGGTCTTGGAATGCGATATGCATTTCTTGGTGCATTTGAAGCGGCGCATTTAAATGCAGAAGGAATGAAAAAATATTGTGAAACATATAAAAACTCAATTTATGATGTAAGTATGACATTTGGTCCAGTTCCTAAATTNNNCGGAGAAATGGCCCAAAAAATTAGCAATGAATTAAATGAGATGTGTCCATTAGAAAAATTAAAAGAAAGACGTATATGGAGAGATGATGCTTTGACAAAATTATCTTTATTAAAAAAAAGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_612#0 AATCGAAGTTGTAAAAGGTGTTAAACTAATACAAGAATGTGTGCCAGAAAATTTACCATT 60 consensus_612#1 ------------------------------------------------------------ consensus_612#0 AAAACTTAAACTTTATAATGAACTCGATAACTTAGTTGATGATAAAGTTATTTTATCTTC 120 consensus_612#1 ------------------------------------------------------------ consensus_612#0 TTCAACATCTACTTTTCGTCCCTCTTTATTAAGCGAAAATTTAAAACATCGTGAACAAGT 180 consensus_612#1 ------------------------------------------------------------ consensus_612#0 TATTGTATCACACCCGGTAAATCCTCCGTATTATGTACCACTTGTAGAAATTGTGCCAGC 240 consensus_612#1 ------------------------------------------------------------ consensus_612#0 TCCTTGGACTCGTGCTGAAATACCATTGCAAGTGAAAGCTATTATGACTGAAATAGGTCA 300 consensus_612#1 ------------------------------------------------------------ consensus_612#0 AACACCTGTTGTACTAACTAGAGAAATTGATGGTTTTGTGCTTAATCGAATACAATATGC 360 consensus_612#1 ----------------NCNCGGAGNNCCAATCGANNACNAACAANGCAACCNCAANACGC 44 * * ** * * * * *** * ** consensus_612#0 AATTTTAAATGAAGCATGGAGATTAGTTGCTGACGGAATATTAAATGC-GAAAGATGTAG 419 consensus_612#1 ---------TGCCACGGGAGANNATGTTGCNGACGGAANANTAAANGCCGAAAGATGTAG 95 ** * * ***** ******* * **** ** *********** consensus_612#0 ACGC-AGTTATGAGTGAAGGTCTTGGAATGCGATATGCATTTCTTGGTGCATTTGAAGCG 478 consensus_612#1 ACGCCAGTTATGAGTGAAGGTCTTGGAATGCGATATGCATTTCTTGGTGCATTTGAAGCG 155 **** ******************************************************* consensus_612#0 GCGCATTTAAATGCAGAAGGAATGAAAAAATATTGTGAAACATATAAAAACTCAATTTAT 538 consensus_612#1 GCGCATTTAAATGCAGAAGGAATGAAAAAATATTGTGAAACATATAAAAACTCAATTTAT 215 ************************************************************ consensus_612#0 GATGTAAGTATGACATTTGGTCCAGTTCCTAAATNNNNGGGAGAAATGGCAGAAAAAATT 598 consensus_612#1 GATGTAAGTATGACATTTGGTCCAGTTCCTAAATTNNNCGGAGAAATGGCCCAAAAAATT 275 ********************************** *** *********** ******** consensus_612#0 AGCAATGAATTAAATGAGATGTGTCCATTAGAAAAATTAAAAGANAGACGTATATGGAGA 658 consensus_612#1 AGCAATGAATTAAATGAGATGTGTCCATTAGAAAAATTAAAAGAAAGACGTATATGGAGA 335 ******************************************** *************** consensus_612#0 GATGATGCTTTGACAAAATTATCTTTATTAAAAAAAAGAATTGAATAAGGAAAAAAAAAN 718 consensus_612#1 GATGATGCTTTGACAAAATTATCTTTATTAAAAAAAAGAATT------------------ 377 ****************************************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |