These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence [ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCACGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATTGTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATAAAA] [+] EMBL BI511767 [ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCACGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATT ] [-] EMBL BQ103789 [ ATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGACCTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATTGTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATAAAA] consensusID : consensus_703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [TTTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCATATTTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT] [+] EMBL BI509164 [TTTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCATATTTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_703#0 ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCA 60 consensus_703#1 ------------------------------------------------------------ consensus_703#0 CGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCA 120 consensus_703#1 ------------------------------------------------------------ consensus_703#0 GGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATC 180 consensus_703#1 -----------------------------------------------------------T 1 consensus_703#0 ACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATA 240 consensus_703#1 TTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCA 61 ** * * * * ** * *** ** * **** *** * ** * consensus_703#0 AATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAG---AGCTGCAGGAGTT 297 consensus_703#1 TAT-TTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTT 120 ** *** ** ******** * * * * * * ******* consensus_703#0 TATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCT 357 consensus_703#1 TATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCT 180 ************************************************************ consensus_703#0 GTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGT 417 consensus_703#1 GTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGT 240 ************************************************************ consensus_703#0 GGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAA 477 consensus_703#1 GGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAA 300 ************************************************************ consensus_703#0 AATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATG 537 consensus_703#1 AATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATG 360 ************************************************************ consensus_703#0 AACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCA 597 consensus_703#1 AACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCA 420 ************************************************************ consensus_703#0 ACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTA 657 consensus_703#1 ACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTA 480 *** ******************************************************** consensus_703#0 GTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATT 717 consensus_703#1 GTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT--------------- 525 ********************************************* consensus_703#0 GTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATA 777 consensus_703#1 ------------------------------------------------------------ consensus_703#0 AAA 780 consensus_703#1 --- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |