Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 703 cluster # 703       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_703#0 length = 780 sequences # 2  
consensus_703#1 length = 525 sequences # 1  

consensusID : consensus_703#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 780
fasta sequence
                              [ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCACGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATTGTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATAAAA]

[+] EMBL BI511767             [ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCACGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATT                                                                                                                                                                                                                      ]
[-] EMBL BQ103789             [                                                                      ATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGACCTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATTGTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATAAAA]


>consensus_703#0 ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCA CGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCA GGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATC ACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATA AATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTAT AGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTG ATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGT ATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAAT GACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAAC TCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACT AGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTT TATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATTGTA AAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATAAAA



consensusID : consensus_703#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence
                              [TTTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCATATTTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT]

[+] EMBL BI509164             [TTTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCATATTTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT]


>consensus_703#1 TTTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGC ATATTTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTT TATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCT GTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGT GGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAA AATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATG AACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCA ACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTA GTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_703#0      ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCA 60
consensus_703#1      ------------------------------------------------------------
                                                                                 

consensus_703#0      CGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCA 120
consensus_703#1      ------------------------------------------------------------
                                                                                 

consensus_703#0      GGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATC 180
consensus_703#1      -----------------------------------------------------------T 1
                                                                                 

consensus_703#0      ACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATA 240
consensus_703#1      TTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCA 61
                         **  * * * * ** * ***      **   *  ****  ***  *    **   *

consensus_703#0      AATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAG---AGCTGCAGGAGTT 297
consensus_703#1      TAT-TTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTT 120
                      ** *** **       ********   *    *    *   *    *  *  *******

consensus_703#0      TATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCT 357
consensus_703#1      TATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCT 180
                     ************************************************************

consensus_703#0      GTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGT 417
consensus_703#1      GTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGT 240
                     ************************************************************

consensus_703#0      GGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAA 477
consensus_703#1      GGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAA 300
                     ************************************************************

consensus_703#0      AATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATG 537
consensus_703#1      AATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATG 360
                     ************************************************************

consensus_703#0      AACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCA 597
consensus_703#1      AACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCA 420
                     ************************************************************

consensus_703#0      ACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTA 657
consensus_703#1      ACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTA 480
                     *** ********************************************************

consensus_703#0      GTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATT 717
consensus_703#1      GTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT--------------- 525
                     *********************************************               

consensus_703#0      GTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATA 777
consensus_703#1      ------------------------------------------------------------
                                                                                 

consensus_703#0      AAA 780
consensus_703#1      ---
                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)