These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence [CGTAAGTTTATTGTAATGAATGGAAAGTCAGGTATAGTGTAAGCAGGAAAACTGTGGATTCGTATAGTCAGATACGGTATAGTAATAGATTTTCCAACAAAACATTGGGGCATATTTAATGTTGATATAAGGCATATTTATATATGTAAAAGCCCAATACAACTAAAAGGCGTACAACTCTACGCTATACCGTGTTGCTCTGGCATCTCTCACGNNCACCTATACCGACTCGGAGGGCGAAGACGGGGTGGAAGACGACCTTCAGGAGAATTCGAACACTCCCCAGGGGGCCGCCCCGCATAATGCCCAAGTCGGTCAGCCCCAGGCTTTCACCAGTCCCAAATCTGGCACATCAGCCTCAAATAGTCCCGTTGTTGCTCCCAACGTCGGTGGCAAGTCTAGTAACGATTTGTCGAACGCGCCCACCTTAGTAACAGATGTGACATCTAAGGTGCAGAGATTGGTTTCATACTTTTATGATTCAATAGTCTCCGATGACGAGGGAGTGGTACAGACACAGATCGATGGACAGCCTTTTGAAAATGGAAGGCCCTCCTCGATTATGGAATGCTCTCCCTGTTGTCAAGGAGAACAATTAGTTTCAGATAGCGAGGTGGACTCCTATGGCGTCACTATACCACCAGAGCCACCAGGGCAGTGTCCTGTGGAACTGCAGGAAAAAATAACAAAACTTTTTAGGAAAATGGAGAGCA] [+] EMBL BI515037 [CGTAAGTTTATTGTAATGAATGGAAAGTCAGGTATAGTGTAAGCAGGAAAACTGTGGATTCGTATAGTCAGATACGGTATAGTAATAGATTTTCCAACAAAACATTGGGGCATATTTAATGTTGATATAAGGCATATTTATATATGTAAAAGCCCAATACAACTAAAAGGCGTACAACTCTACGCTATACCGTGTTGCTCTGGCATCTCTCACGNNCACCTATACCGACTCGGAGGGCGAAGACGGGGTGGAAGACGACCTTCAGGAGAATTCGAACACTCCCCAGGGGGCCGCCCCGCATAATGCCCAAGTCGGTCAGCCCCAGGCTTTCACCAGTCCCAAATCTGGCACATCAGCCTCAAATAGTCCCGTTGTTGCTCCCAACGTCGGTGGCAAGTCTAGTAACGATTTGTC ] [+] EMBL BI506357 [ ATTGGGGCATATTTAATGTTGATATAAGGCATATTTATATATGTAAAAGCCCAATACAACTAAAAGGCGTACAACTCTACGCTATACCGTGTTGCTCTGGCATCTCTCACGGCCACCTATACCGACTCGGAGGGCGAAGACGGGGTGGAAGACGACCTTCAGGAGAATTCGAACACTCCCCAGGGGGCCGCCCCGCATAATGCCCAAGTCGGTCAGCCCCAGGCTTTCACCAGTCCCAAATCTGGCACATCAGCCTCAAATAGTCCCGTTGTTGCTCCCAACGTCGGTGGCAAGTCTAGTAACGATTTGTCGAACGCGCCCACCTTAGTAACAGATGTGACATCTAAGGTGCAGAGATTGGTTTCATACTTTTATGATTCAATAGTCTCCGATGACGAGGGAGTGGTACAGACACAGATCGATGGACAGCCTTTTGAAAATGGAAGGCCCTCCTCGATTATGGAATGCTCTCCCTGTTGTCAAGGAGAACAATTAGTTTCAGATAGCGAGGTGGACTCCTATGGCGTCACTATACCACCAGAGCCACCAGGGCAGTGTCCTGTGGAACTGCAGGAAAAAATAACAAAACTTTTTAGGAAAATGGAGAGCA] consensusID : consensus_711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [AACATTGGGGCATATTTAATGTTGATATAAGGCATATTTATATATGTAAAAGCCCAATACAACTAAAAGGCGTACAACTCTACGCTATACCGGTGAGTTCCAACACAAAATATTGCTTGGTAGTACGGCGGACACTCAAAGCCAACTAACCATGTCTGTACAAAGTGTTGCTCTGGCATCTCTCACGGCCACCTATACCGACTCGGAGGGCGAAGACGGGGTGGAAGACGACCTTCAGGAGAATTCGAACACTCCCCAGGGGGCCGCCCCGCATAATGCCCAAGTCGGTCAGCCCCAGGCTTTCACCAGTCCCAAATCTGGCACATCAGCCTCAAATAGTCCCGTTGTTGCTCCCAACGTCGGTGGCAAGTCTAGTAACGATTTGTCGAACGCGCCCACCTTAGTAACAGATGTGACATCTAAGGTGCAGAGATTGGTTTCATACTTTGATGATTCAATAGTCTCCGATGACGAGGGAGTGGTACAGACACAGATCGATGGACA] [+] EMBL BI512427 [AACATTGGGGCATATTTAATGTTGATATAAGGCATATTTATATATGTAAAAGCCCAATACAACTAAAAGGCGTACAACTCTACGCTATACCGGTGAGTTCCAACACAAAATATTGCTTGGTAGTACGGCGGACACTCAAAGCCAACTAACCATGTCTGTACAAAGTGTTGCTCTGGCATCTCTCACGGCCACCTATACCGACTCGGAGGGCGAAGACGGGGTGGAAGACGACCTTCAGGAGAATTCGAACACTCCCCAGGGGGCCGCCCCGCATAATGCCCAAGTCGGTCAGCCCCAGGCTTTCACCAGTCCCAAATCTGGCACATCAGCCTCAAATAGTCCCGTTGTTGCTCCCAACGTCGGTGGCAAGTCTAGTAACGATTTGTCGAACGCGCCCACCTTAGTAACAGATGTGACATCTAAGGTGCAGAGATTGGTTTCATACTTTGATGATTCAATAGTCTCCGATGACGAGGGAGTGGTACAGACACAGATCGATGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_711#0 CGTAAGTTTATTGTAATGAATGGAAAGTCAGGTATAGTGTAAGCAGGAAAACTGTGGATT 60 consensus_711#1 ------------------AACATTGGGGCATATTTAATGTTGATATAAGGCATATTTATA 42 ** * ** * ** *** * * * * ** consensus_711#0 CGTATAGTCAGATACGGTATAGTAATAGATTTTCCAACAAAACATTGGGGCATATTTAAT 120 consensus_711#1 TATGTAA--AAGCCCAATACAACTAAAAGGCGTACAACTCTACGCTATACCGG--TGAGT 98 * ** * * ** * * * * **** ** * * * * * consensus_711#0 GTTGATATAAGGCATATTTATATATGTAAAAGCCCAATACA-ACTAAAAGGCGTACAACT 179 consensus_711#1 TCCAACACAAAATAT-------TGCTTGGTAGTACGGCGGACACTCAAAGCCAACTAACC 151 * * ** ** * * ** * * *** **** * *** consensus_711#0 CTACGC-TATACCGTGTTGCTCTGGCATCTCTCACGNNCACCTATACCGACTCGGAGGGC 238 consensus_711#1 ATGTCTGTACAAAGTGTTGCTCTGGCATCTCTCACGGCCACCTATACCGACTCGGAGGGC 211 * ** * *********************** ********************** consensus_711#0 GAAGACGGGGTGGAAGACGACCTTCAGGAGAATTCGAACACTCCCCAGGGGGCCGCCCCG 298 consensus_711#1 GAAGACGGGGTGGAAGACGACCTTCAGGAGAATTCGAACACTCCCCAGGGGGCCGCCCCG 271 ************************************************************ consensus_711#0 CATAATGCCCAAGTCGGTCAGCCCCAGGCTTTCACCAGTCCCAAATCTGGCACATCAGCC 358 consensus_711#1 CATAATGCCCAAGTCGGTCAGCCCCAGGCTTTCACCAGTCCCAAATCTGGCACATCAGCC 331 ************************************************************ consensus_711#0 TCAAATAGTCCCGTTGTTGCTCCCAACGTCGGTGGCAAGTCTAGTAACGATTTGTCGAAC 418 consensus_711#1 TCAAATAGTCCCGTTGTTGCTCCCAACGTCGGTGGCAAGTCTAGTAACGATTTGTCGAAC 391 ************************************************************ consensus_711#0 GCGCCCACCTTAGTAACAGATGTGACATCTAAGGTGCAGAGATTGGTTTCATACTTTTAT 478 consensus_711#1 GCGCCCACCTTAGTAACAGATGTGACATCTAAGGTGCAGAGATTGGTTTCATACTTTGAT 451 ********************************************************* ** consensus_711#0 GATTCAATAGTCTCCGATGACGAGGGAGTGGTACAGACACAGATCGATGGACAGCCTTTT 538 consensus_711#1 GATTCAATAGTCTCCGATGACGAGGGAGTGGTACAGACACAGATCGATGGACA------- 504 ***************************************************** consensus_711#0 GAAAATGGAAGGCCCTCCTCGATTATGGAATGCTCTCCCTGTTGTCAAGGAGAACAATTA 598 consensus_711#1 ------------------------------------------------------------ consensus_711#0 GTTTCAGATAGCGAGGTGGACTCCTATGGCGTCACTATACCACCAGAGCCACCAGGGCAG 658 consensus_711#1 ------------------------------------------------------------ consensus_711#0 TGTCCTGTGGAACTGCAGGAAAAAATAACAAAACTTTTTAGGAAAATGGAGAGCA 713 consensus_711#1 ------------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |