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Apis mellifera
cluster # 768 cluster # 768       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_768#0 length = 640 sequences # 2  
consensus_768#1 length = 551 sequences # 1  

consensusID : consensus_768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 640
fasta sequence
                              [AAAATCGAAGTAATTTTTTCATGAACAATAACGACGGATGTTTTTTATCGCGAAGAAGATGCGATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGCGTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGAAGACGGCGTTCTTAGATTGACGCGCATGCGCATTACGTTCTACTTGACGACGCTCTTCTTTCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTGAAAAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACCAAGAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGAAGTTTGATATTTAAAATACATAAAAATGACAGTTTACATAGATGATTGTACCTATACTGTGCGTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAGAAATGCGAGAATATAGAAGACAAAAATTAAAGTCAGAAACATTAGAAGAACGTACTATTAGATTATTTTCTGCTGCTGAAAGAATGAAGAACGCTAGGGCAAAG]

[+] EMBL BI504872             [AAAATCGAAGTAATTTTTTCATGAACAATAACGACGGATGTTTTTTATCGCGAAGAAGATGCGATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGCGTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGAAGACGGCGTTCTTAGATTGACGCGCATGCGCATTACGTTCTACTTGACGACGCTCTTCTTTCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTGAAAAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACCAAGAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGAAGTTTGATATTTAAAATACATAAAAATGACAGTTTACATAGATGATTGTACCTATACTGTGCGTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAGAAATGCGAGAATATAGAAGACAAAAATTAAAGTCAGAA                                                                  ]
[+] EMBL BI509816             [                                                               ATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGCGTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGAAGACGGCGTTCTTAGATTGACGCGCATGCGCATTACGTTCTACTTGACGACGCTCTTCTTTCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTGAAAAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACCAAGAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGAAGTTTGATATTTAAAATACATAAAAATGACAGTTTACATAGATGATTGTACCTATACTGTGCGTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAGAAATGCGAGAATATAGAAGACAAAAATTAAAGTCAGAAACATTAGAAGAACGTACTATTAGATTATTTTCTGCTGCTGAAAGAATGAAGAACGCTAGGGCAAAG]


>consensus_768#0 AAAATCGAAGTAATTTTTTCATGAACAATAACGACGGATGTTTTTTATCGCGAAGAAGAT GCGATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGC GTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGA AGACGGCGTTCTTAGATTGACGCGCATGCGCATTACGTTCTACTTGACGACGCTCTTCTT TCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTGAA AAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACCAA GAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGAAG TTTGATATTTAAAATACATAAAAATGACAGTTTACATAGATGATTGTACCTATACTGTGC GTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAGAAAT GCGAGAATATAGAAGACAAAAATTAAAGTCAGAAACATTAGAAGAACGTACTATTAGATT ATTTTCTGCTGCTGAAAGAATGAAGAACGCTAGGGCAAAG



consensusID : consensus_768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence
                              [TTCTTCGCGATAAAACACATCCGTCGTTATTGTTCATGAAAAAATTACTTCGATTTTTCTTAAGATATACCGCAGACAAACGCACAAAAGCAATATCGGCCGACATGTAAGATTTTCGTTCGGAGCCACTTTAAGGGGCCAAGCGGGGTCGCCGATAGGCTGCGTGTGACGTGGTTGCGTTTATTGACCATAACCCCTTCCTACTCCCGTCTGCAACTTCACGACGGACAGGTGTACGACCTGAGAGACCGCAAAACAATTGACCAAACCGACCGCGTCTTAAAATACACGGCATTGTCAGAGAATCAGAAAGATGCTTGGAATGTTCGACCTCTTATCGTGTCCACTGATGGTGTTATTATTCTTCCTTTTCATCAATAATATGATTGTTTTCTGCAAAATATTCAACTCACGACGAGAAGGTGAGACTTACAATGAGCTCGTCAGGAAGATATATTTTTAATAAACTTTCGTGAAAGAATTTAAATTATTCAATGATAATTCATAATATTGATATTCATATGAAAAAATTAATATCTAAAATTCTTAAT]

[+] EMBL BI507270             [TTCTTCGCGATAAAACACATCCGTCGTTATTGTTCATGAAAAAATTACTTCGATTTTTCTTAAGATATACCGCAGACAAACGCACAAAAGCAATATCGGCCGACATGTAAGATTTTCGTTCGGAGCCACTTTAAGGGGCCAAGCGGGGTCGCCGATAGGCTGCGTGTGACGTGGTTGCGTTTATTGACCATAACCCCTTCCTACTCCCGTCTGCAACTTCACGACGGACAGGTGTACGACCTGAGAGACCGCAAAACAATTGACCAAACCGACCGCGTCTTAAAATACACGGCATTGTCAGAGAATCAGAAAGATGCTTGGAATGTTCGACCTCTTATCGTGTCCACTGATGGTGTTATTATTCTTCCTTTTCATCAATAATATGATTGTTTTCTGCAAAATATTCAACTCACGACGAGAAGGTGAGACTTACAATGAGCTCGTCAGGAAGATATATTTTTAATAAACTTTCGTGAAAGAATTTAAATTATTCAATGATAATTCATAATATTGATATTCATATGAAAAAATTAATATCTAAAATTCTTAAT]


>consensus_768#1 TTCTTCGCGATAAAACACATCCGTCGTTATTGTTCATGAAAAAATTACTTCGATTTTTCT TAAGATATACCGCAGACAAACGCACAAAAGCAATATCGGCCGACATGTAAGATTTTCGTT CGGAGCCACTTTAAGGGGCCAAGCGGGGTCGCCGATAGGCTGCGTGTGACGTGGTTGCGT TTATTGACCATAACCCCTTCCTACTCCCGTCTGCAACTTCACGACGGACAGGTGTACGAC CTGAGAGACCGCAAAACAATTGACCAAACCGACCGCGTCTTAAAATACACGGCATTGTCA GAGAATCAGAAAGATGCTTGGAATGTTCGACCTCTTATCGTGTCCACTGATGGTGTTATT ATTCTTCCTTTTCATCAATAATATGATTGTTTTCTGCAAAATATTCAACTCACGACGAGA AGGTGAGACTTACAATGAGCTCGTCAGGAAGATATATTTTTAATAAACTTTCGTGAAAGA ATTTAAATTATTCAATGATAATTCATAATATTGATATTCATATGAAAAAATTAATATCTA AAATTCTTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_768#0      AAAATCGAAGTAATTTTTTCATGAACAATAACGACGGATGTTTTTTATCGCGAAGAAGAT 60
consensus_768#1      --------------TTCTTCGCGATAAAACACATCCGTCGTTATTGTTCATGAAAAAATT 46
                                   ** ***  **  **  **  * *  *** **  **  *** **  *

consensus_768#0      GCGATTATAAAATGGAATCAATCCACGACGCGGTTTAGCTTTACAACGGATTAATCGTGC 120
consensus_768#1      ACT----TCGATTTTTCTTAAGATATACCGCAGACAAACGC-ACAAAAGCAATATCGGCC 101
                      *     *  * *    * **   *   *** *   * *   ****  *    ****  *

consensus_768#0      GTTTCAGTGAACTGACCGAATTGCATTCGCCATTGTTGTGATTGGTGAACGTTCCAGAGA 180
consensus_768#1      G--------ACATGTAAGATTTTCGTTCGGAGCCACTTTAAGGGGCCAAG----CGGGGT 149
                     *        *  **   ** ** * ****       * * *  **  **     * * * 

consensus_768#0      AGACGGCGTTCTTAGATTGACGCGCATGCGC--ATTACGTTCTACTTGACGACGCTCTTC 238
consensus_768#1      CGCCGATAGGCTGCGTGTGACGTGGTTGCGTTTATTGACCATAACCCCTTCCTACTCCCG 209
                      * **     **  *  ***** *  ****   ***       **         ***   

consensus_768#0      TTTCGAATTTTGGGAGACACGCATACACAAAGCAACAAGGCACAGGTAATTTCTAGAGTG 298
consensus_768#1      TCTGCAACTTCACGACGGACAGGTGTACGACCTGAGAGACCGCAAA--------ACAATT 261
                     * *  ** **   **   **   *  ** *    * *   * **          * * * 

consensus_768#0      AAAAATAATGAAAAAGTACTTTATATATGAAATGATATGTAAGAAAAATTAATAAGTACC 358
consensus_768#1      GACCAAACCGACCGCGT-CTTAAAATACACGGCAT--TGTCAGAGAATCAGAAAGATGCT 318
                      *  * *  **    ** *** * ***          *** *** **    * *  * * 

consensus_768#0      AAGAAAGAAAACAAAGTTACGCTTAATTATTAACGTATGCACAAAGTATATTTTCTGAGA 418
consensus_768#1      TGGAATGTTCGACCTCTTAT-CGTGTCCACTGATG-GTGTTATTATTCTTCCTTTTCATC 376
                       *** *         ***  * *    * * * *  **     * * *   ** * *  

consensus_768#0      AGTTTGATATTTAAAATACATAAAAATGACAGTTTACAT--AGATGATTGTACCTATACT 476
consensus_768#1      AATAATATGATTGTTTTCTGCAAAATATTCAACTCACGACGAGAAGGTGAGACTTACAAT 436
                     * *   **  **    *    ****    **  * **    *** * *   ** ** * *

consensus_768#0      GTGCGTAATTGCATGTTATGCCTAAGGCTAAAAAAAAATCTTACCTTAAAAAGGTAAGAG 536
consensus_768#1      GAGCTCGTCAGGAAGATATATTT----TTAATAAA----CTTTCGTGAAAGAATTTAAAT 488
                     * **      * * * ***   *     *** ***    *** * * *** *  * * * 

consensus_768#0      AAAT--GCGAGAATATAGAAGACAAAAATTAAAGTCAGAAACATTAGAAGAACGTACTAT 594
consensus_768#1      TATTCAATGATAATTCATAATATTGATATTCATATGAAAAA-ATTAATATCTAAAATTCT 547
                      * *    ** ***  * ** *   * *** *  * * *** ****  *      * * *

consensus_768#0      TAGATTATTTTCTGCTGCTGAAAGAATGAAGAACGCTAGGGCAAAG 640
consensus_768#1      TAAT------------------------------------------ 551
                     **                                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)