These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence [GACGGTCGCGCGAACAAATGAACACCTCGGCACAGCGTTCGGGATATTCCAAAGATGTGAGGAATGATCACGTGGGTGATGGTCGGGCTGCTCCTGGCTGCGGAAACTTGCGGCAGAAACGTCCTCTCCGGAAACGGAAACGGAAAGGAGGAGTCGAAGCAGAAGGACGGGCTGAAGGGAATAACCGCGGAGGAGGAAGACATCTACCGTCTAACGTGCTACACTTGCGTCAACGTCAGCGATAACCAGATGTGCAACGAATGGGCGATAGACACACCGTGTCCGGCGGGCGGCCGGGACTTCTGCAGATCGCTGCACATTTTGGACAGCCGAGGGAATAGCGTGTTGGTGAGCAAGAGCTGTGTGAGCAGCGCGGAATGCGGCCCCGCCTCTGTCGGTTGCATCCCGGTGGACACGCAGCAGATTTGCATCAGTTGCTGCGACCTGAGCTACTGCAACATCGAGTCGCCGACCAACTCCACGAACGCCATTTTCTCGCGCAAACGGCGCGCCAAATCCAAGTCGAAACGCAAACGACCCGGTAGGAACGGGGTCGAGGGCGGCCGGTTCTACGGGGGTGGAGGCGCGCTCTGGCTCCTGGCCTCACTCTTCTATGCATATCATTGCTGAGGAAGCAGCAACGCGGATGAATTCTAGTTAGAAGACACGCGCACCAGGCAGCTCGGGTCAATCAATCCTTCTCCTACGAGTTTTGCGGGAATTACGTGAATTGAAATCTC] [+] EMBL BI512193 [GACGGTCGCGCGAACAAATGAACACCTCGGCACAGCGTTCGGGATATTCCAAAGATGTGAGGAATGATCACGTGGGTGATGGTCGGGCTGCTCCTGGCTGCGGAAACTTGCGGCAGAAACGTCCTCTCCGGAAACGGAAACGGAAAGGAGGAGTCGAAGCAGAAGGACGGGCTGAAGGGAATAACCGCGGAGGAGGAAGACATCTACCGTCTAACGTGCTACACTTGCGTCAACGTCAGCGATAACCAGATGTGCAACGAATGGGCGATAGACACACCGTGTCCGGCGGGCGGCCGGGACTTCTGCAGATCGCTGCACATTTTGGACAGCCGAGGGAATAGCGTGTTGGTGAGCAAGAGCTGTGTGAGCAGCGCGGAATGCGGCCCCGCCTCT ] [+] EMBL BI510821 [ TCAACGTCAGCGATAACCAGATGTGCAACGAATGGGCGATAGACACACCGTGTCCGGCGGGCGGCCGGGACTTCTGCAGATCGCTGCACATTTTGGACAGCCGAGGGAATAGCGTGTTGGTGAGCAAGAGCTGTGTGAGCAGCGCGGAATGCGGCCCCGCCTCTGTCGGTTGCATCCCGGTGGACACGCAGCAGATTTGCATCAGTTGCTGCGACCTGAGCTACTGCAACATCGAGTCGCCGACCAACTCCACGAACGCCATTTTCTCGCGCAAACGGCGCGCCAAATCCAAGTCGAAACGCAAACGACCCGGTAGGAACGGGGTCGAGGGCGGCCGGTTCTACGGGGGTGGAGGCGCGCTCTGGCTCCTGGCCTCACTCTTCTATGCATATCATTGCTGAGGAAGCAGCAACGCGGATGAATTCTAGTTAGAAGACACGCGCACCAGGCAGCTCGGGTCAATCAATCCTTCTCCTACGAGTTTTGCGGGAATTACGTGAATTGAAATCTC] consensusID : consensus_797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TCCAAAGATGTGAGGAATGATCACGTGGGTGATGGTCGGGCTGCTCCTGGCTGCGGAAACTTGCGGCAGAAACGTCCTCTCCGGAAACGGAAACGGAAAGGAGGAGTCGAAGCAGAAGGACGGGCTGAAGGGAATAACCGCGGAGGAGGAAGACATCTACCGTGGGTATCGGTGTCGAAAAGCGACGTTGGCCAGAAAGGAAGGAGAGAGAGAGAGAGAGAGACGAGTGGAAGAAAAGTAGGGGAGAAAGGGCGGAGAGAGTACCGGGGGCAAACAGATCTATGATTTGCTCGGCTAACTCGAGCTTATCCAACCCTCTCGAATCCTGCAATCGAGCTCCGCTAATCCTCCTTCCTGCCTTTCTACCGCTTAACAGATCTCGCTGGCCACTTTACCTCCATCCACCTTCTACCAATTTCCCACAAATCATCCCCCTCCTCTCCCTCCCCTCCATCTCTCCACGTCCCTCGCTTGTAACGCATTGTTCTGAAATATCGCCAACCTTACCGCTTTCCTGCCAACCTTACTTAAACCAAACTCCATTCGCAGTTTCCGAACCGAGCGGCGGCAGTGGCGAGTTTACCCTGTTCG] [+] EMBL BI505313 [TCCAAAGATGTGAGGAATGATCACGTGGGTGATGGTCGGGCTGCTCCTGGCTGCGGAAACTTGCGGCAGAAACGTCCTCTCCGGAAACGGAAACGGAAAGGAGGAGTCGAAGCAGAAGGACGGGCTGAAGGGAATAACCGCGGAGGAGGAAGACATCTACCGTGGGTATCGGTGTCGAAAAGCGACGTTGGCCAGAAAGGAAGGAGAGAGAGAGAGAGAGAGACGAGTGGAAGAAAAGTAGGGGAGAAAGGGCGGAGAGAGTACCGGGGGCAAACAGATCTATGATTTGCTCGGCTAACTCGAGCTTATCCAACCCTCTCGAATCCTGCAATCGAGCTCCGCTAATCCTCCTTCCTGCCTTTCTACCGCTTAACAGATCTCGCTGGCCACTTTACCTCCATCCACCTTCTACCAATTTCCCACAAATCATCCCCCTCCTCTCCCTCCCCTCCATCTCTCCACGTCCCTCGCTTGTAACGCATTGTTCTGAAATATCGCCAACCTTACCGCTTTCCTGCCAACCTTACTTAAACCAAACTCCATTCGCAGTTTCCGAACCGAGCGGCGGCAGTGGCGAGTTTACCCTGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_797#0 GACGGTCGCGCGAACAAATGAACACCTCGGCACAGCGTTCGGGATATTCCAAAGATGTGA 60 consensus_797#1 -----------------------------------------------TCCAAAGATGTGA 13 ************* consensus_797#0 GGAATGATCACGTGGGTGATGGTCGGGCTGCTCCTGGCTGCGGAAACTTGCGGCAGAAAC 120 consensus_797#1 GGAATGATCACGTGGGTGATGGTCGGGCTGCTCCTGGCTGCGGAAACTTGCGGCAGAAAC 73 ************************************************************ consensus_797#0 GTCCTCTCCGGAAACGGAAACGGAAAGGAGGAGTCGAAGCAGAAGGACGGGCTGAAGGGA 180 consensus_797#1 GTCCTCTCCGGAAACGGAAACGGAAAGGAGGAGTCGAAGCAGAAGGACGGGCTGAAGGGA 133 ************************************************************ consensus_797#0 ATAACCGCGGAGGAGGAAGACATCTACCGTCTAACGTGCTACACTTGCGTCAACGTCAGC 240 consensus_797#1 ATAACCGCGGAGGAGGAAGACATCTACCGT-----GGGTATCGGTGTCG--AAAAGCGAC 186 ****************************** * * * * ** ** * * consensus_797#0 GATAACCAGATGTGCAACGAATGGGCGATAGACACACCGTGTCCGGCGGGCGGCCGGGAC 300 consensus_797#1 GTTGGCCAGAAAGG-AAGGAGAGAGAGAGAGAGAGAG-ACGAGTGGAAGAAAAGTAGGGG 244 * * ***** * ** ** * * ** *** * * * ** * ** consensus_797#0 TTCTGCAGATCGCTGCACATTTTGGACAGCCGAGGGAATAGCGTGTT-GGTGAGCAAGAG 359 consensus_797#1 AGAAAGGGCGGAGAGAGTACCGGGGGCAAACAGATCTATGATTTGCTCGGCTAACTCGAG 304 * * * ** ** * ** ** * ** * * *** consensus_797#0 CTGTGTGAGCAGCGCGGAATGCGGC--CCCGCCTCTGTCGGTTGCATCCCGGTGGACACG 417 consensus_797#1 CTTATCCAACCCTCTCGAATCCTGCAATCGAGCTCCGCTAAT--CCTCCTTCCTGCCTTT 362 ** * * **** * ** * *** * * * *** * * consensus_797#0 CAGCAGATTTGCATCAGTTGCTGCGACCTGAGCTACTGCAACATCGAGTCGCCGACCAAC 477 consensus_797#1 CTACCGCTT---AACAGATCTCGCTGGCCACTTTACCTC--CATCCA-CCTTCTACCAAT 416 * * * ** * *** * ** * *** * **** * * * ***** consensus_797#0 TCCACGAACGCCATTTTCTCGCGCAAACGGCGCGCCAAATCCAAGTCGAAACGCAAACGA 537 consensus_797#1 TTCCCACAAATCATCCCCCTCCTC------TCCCTCCCCTCCATCTCTCCACGTCCCTCG 470 * * * * *** * * * * * **** ** *** consensus_797#0 CCCGGTAGGAACGGGGTCGAGG-GCGGCCGGTTCTACGGGGGTGGAGGCGCGCTCTGGCT 596 consensus_797#1 CTTGTAACGCATTGTTCTGAAATATCGCCAACCTTACCGCTTTCCTGCCAACCTT----A 526 * * * * * * ** *** *** * * * * ** consensus_797#0 CCTGGCCTCACTCTTCTATGCATATCATTGCTGAGGAAGCAGCAACG-CGGATGAATTCT 655 consensus_797#1 CTTAAACCAAACTCCATTCGCAGTTTCCGAACCGAGCGGCGGCAGTGGCGAGTTTACCCT 586 * * * * * *** * * ** *** * ** * * ** consensus_797#0 AGTTAGAAGACACGCGCACCAGGCAGCTCGGGTCAATCAATCCTTCTCCTACGAGTTTTG 715 consensus_797#1 GTTCG------------------------------------------------------- 591 * consensus_797#0 CGGGAATTACGTGAATTGAAATCTC 740 consensus_797#1 ------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |