These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 539 fasta sequence [GGCTGTATCTTGCTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAAACACGAGCCAGATACAGTCTCACCGTTTGAGATGGCATTGGAACGGGCGGAGGAACTTGCTGTTTGCAGCGATGCTGGGCGTACCGCAAAATTGGGGACCCCATGTTCTAGTCTCTACACCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTTCTATTTGCAATATTTTTGTAATAATATACCAATCGAGTTCGTCAAACAAGTTAAAAGAGCGTTTGATTCGATA-TTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATGTGCACTTATATAGCTTAAAGAAAATTTGTATAGTCAATTTNNNCTTTATAGATTTAAAATAGCGTTTTAAATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGATTTTGTACTTACTTATAAATGTTAATTAACAGTTTTGTAAATATTTGTGATACAGCACAACAGCTAGCGGAAAAAATTA] [+] EMBL BI946449 [GGCTGTATCTTGCTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAAACACGAGCCAGATACAGTCTCACCGTTTGAGATGGCATTGGAACGGGCGGAGGAACTTGCTGTTTGCAGCGATGCTGGGCGTACCGCAAAATTGGGGACCCCATGTTCTAGTCTCTACACCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTTCTATTTGCAATATTTTTGTAATAATATACCAATCGAGTTCGTCAAACAAGTTAAAAGAGCGTTTGATTCGATATTTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATGTGCACTTATATAGCTTAAAGAAAA TTGTATAGTCAATTTAACCTTTATAGATTTAAAATAGCGTTTTAAATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGA TTTGTACTTACTTATAAATGTTAATTAACAGTTTTGTAAATATTTGTGATACAGCACAACAGCTAGCGGAAAAAATTA] [-] EMBL BI505149 [ CTACCCCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTTCTATTTGCAATATTTTTGTAATAATATACCCATCGAGTTCGTCAAACAAGTTAAAAGAGCGTTTGATTCGATA TTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATATGTACTTATATAGCTTAAAGAAAATTTGTATAGTCAATTTNNNCTTTATAGATTT AAATAGCGTTTTAAATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGATTTTGTACTTACT ] consensusID : consensus_877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [CTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAATACAATAAACACAACCACCACCACCACGAGAGCACAACGTCGAGATCTTTCATGACGGCGGTGACGATGATGACCGATATCACCATCACCCACACGACCACCCTACAACGCGTCATCCCTCAACGCGTCGGTCGTGAAACGATCCCGAGACGACAGCTTTTTTTCACCGGTGCATCCTGCCGTGCGCCGAGGGTTGCTTTTTTATTGAACTTGTAAAGGGAGATGAGCAGACGGAATGGAATAAAGCAAAAAAAA] [+] EMBL BI503506 [CTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTGTTCTACAAGAATACAATAAACACAACCACCACCACCACGAGAGCACAACGTCGAGATCTTTCATGACGGCGGTGACGATGATGACCGATATCACCATCACCCACACGACCACCCTACAACGCGTCATCCCTCAACGCGTCGGTCGTGAAACGATCCCGAGACGACAGCTTTTTTTCACCGGTGCATCCTGCCGTGCGCCGAGGGTTGCTTTTTTATTGAACTTGTAAAGGGAGATGAGCAGACGGAATGGAATAAAGCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_877#0 GGCTGTATCTTGCTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTG 60 consensus_877#1 ------------CTCGGTGATTTATAGTCTTGTGTGTAGTTGTGCAACTTTCTTCCATTG 48 ************************************************ consensus_877#0 TTCTACAAGAAACACGAGCCAGATACAGTCTCACCGTTTGAGATGGCATTGGAACGGGCG 120 consensus_877#1 TTCTACAAGAA-TACAA--TAAACACAACCACCACCACCACGAGAGCAC---AAC--GTC 100 *********** ** * * * *** * * * ** *** *** * consensus_877#0 GAGGAACTTGCTGTTTGCAGCGATGCTG--GGCGTACCGCAAAATTGGGGACCCCAT-GT 177 consensus_877#1 GAGATCTTTCATGACGGCGGTGACGATGATGACCGATATCACCATCACCCACACGACCAC 160 *** ** ** ** * ** * ** * * * ** ** ** * * consensus_877#0 TCTA-GTCTCTACACCTTTCATTGGTTTGGTTTGTAAACTGTATCGGAACCAATGCATTT 236 consensus_877#1 CCTACAACGCGTCATCCCTCAACGCGTCGGTCGTGAAACGATCCCGAGACGACAGC-TTT 219 *** * * ** * *** * * *** **** * ** ** * ** *** consensus_877#0 CTATTTGCAATAT-TTTTGTAATAATATACCAATCGAGTTCGTCAAACAAGTTAAAAGAG 295 consensus_877#1 TTTTCACCGGTGCATCCTGCCGTGCGCCGAGGGTTGC-TTTTTTATTGAACTTGTAAAGG 278 * * * * * ** * * * ** * * ** ** ** * consensus_877#0 CGTTTGATTCGATATTTTTTTTTTTTCAGAAGTATGGCGGTTTACGTAAAAAAATGTGCA 355 consensus_877#1 GAGATGAGCAGACGGAAT----------GGAATAAAGCA--------AAAAAAA------ 314 *** ** * * * ** ** ******* consensus_877#0 CTTATATAGCTTAAAGAAAATTTGTATAGTCAATTTNNNCTTTATAGATTTAAAATAGCG 415 consensus_877#1 ------------------------------------------------------------ consensus_877#0 TTTTAAATGTTTACTTAATGATCGAAGAATAATTTTATATGTAGATTTTGTACTTACTTA 475 consensus_877#1 ------------------------------------------------------------ consensus_877#0 TAAATGTTAATTAACAGTTTTGTAAATATTTGTGATACAGCACAACAGCTAGCGGAAAAA 535 consensus_877#1 ------------------------------------------------------------ consensus_877#0 ATTA 539 consensus_877#1 ---- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |