These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence [GTCGGATGGAGGTGAAGTGGCCTTGGATTGGGCAGAAGAGGGATGTTCGGCTGTTTCGCCGATTGTGATTATTTTGCCAGGACTCACTGGCGCAAGTCAAGCGGAATATATCAAGTGCCTTGTCTCATCAGCGAAAAAAGTTGGGATACGATGCGTAATCTTCAATAATAGAGGTTTAGGAGGCGTAGAATTGAAGACTCCACGAACATATTGCGCTGCAAATAGCGACGATTTAACAGAGGTTGTTGACTATGTGAAGAAGATTCATCCCAATGTGCTTCTTGGAGCGACGGGAATCTCGATGGGAGGATTAATTTTAGGCAATTATTTAGCACGACAAGGGAAAATAGCCAAAAATAAATTGAAAGGATGTTTCTTGATTTCTGTGCCATGGAACGTATTTGCCGCGACAAAGAGCACAGAGGAGAATTATTTTAACTTGATTTTAAATAAATATTTAGCCTTTTCACTTCGGCAACAAGTAAAACGCTTGCATTATTCCTCGGAAAGTGGAATGTTCGACGTTGATATCGATTCTCTTCTTA] [+] EMBL BI516450 [GTCGGATGGAGGTGAAGTGGCCTTGGATTGGGCAGAAGAGGGATGTTCGGCTGTTTCGCCGATTGTGATTATTTTGCCAGGACTCACTGGCGCAAGTCAAGCGGAATATATCAAGTGCCTTGTCTCATCAGCGAAAAAAGTTGGGATACGATGCGTAATCTTCAATAATAGAGGTTTAGGAGGCGTAGAATTGAAGACTCCACGAACATATTGCGCTGCAAATAGCGACGATTTAACAGAGGTTGTTGACTATGTGAAGAAGATTCATCCCAATGTGCTTCTTGGAGCGACGGGAATCTCGATGGGAGGATTAATTTTAGGCAATTATTTAGCACGACAAGGGAAAATAGCCAAAAATAAATTGAAAGGATGTTTCTTGATTTCTGTGCCATGGAACGTATTTGCCGCGACAAAGAGCACAGAGGAGAATTATTTTAACTTGATTTTAAATAAATATTTAGCCTTTTCACTTCGGCAACAAGTAAAACGCTTGCATTATTCCTCGGAAAGTGGAATGTTCGACGTTG ] [+] EMBL BI515356 [ CAAGTCAAGCGGAATATATCAAGTGCCTTGTCTCATCAGCGAAAAAAGTTGGGATACGATGCGTAATCTTCAATAATAGAGGTTTAGGAGGCGTAGAATTGAAGACTCCACGAACATATTGCGCTGCAAATAGCGACGATTTAACAGAGGTTGTTGACTATGTGAAGAAGATTCATCCCAATGTGCTTCTTGGAGCGACGGGAATCTCGATGGGAGGATTAATTTTAGGCAATTATTTAGCACGACAAGGGAAAATAGCCAAAAATAAATTGAAAGGATGTTTCTTGATTTCTGTGCCATGGAACGTATTTGCCGCGACAAAGAGCACAGAGGAGAATTATTTTAACTTGATTTTAAATAAATATTTAGCCTTTTCACTTCGGCAACAAGTAAAACGCTTGCATTATTCCTCGGAAAGTGGAATGTTCGACGTTGATATCGATTCTCTTCTTA] consensusID : consensus_908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GCTTGCATTATTCCTCGGAAAGTGGAATGTTCGACGTTGATATCGATTCTCTTCTTAAAAGTCAAACTGTAAGAGAGTTTGATTCACAATTTACGGTGAAACAATTCGGCTATAAAGATGTAGAGGATTATTATTCCAACGCAACTATACATGACAAATTACATTTGATTGACGTACCATTATTGTGTCTTAGCGCTGCGGACGATCCATTTCAACCAGTTCAAGCCATACCGTTGAAGGAAATATCACAAACTAAAAAAATAGCTGTTGTTGTAACATCTCGTGGTGGGCATATTGGTTTCATGGAGGGTATGTGGCCGGTAAAAGAAGAACAATATATGGGTAAATTATTTTCACAGTTTTTTACCGCTCTGTTCACTACTAATTTAGAGCATCAATTATTGTGACGAACTTAATAAACTAAATACCAAATGCATTCACAAATATCAATATCAAATATTTCGT] [+] EMBL BI511186 [GCTTGCATTATTCCTCGGAAAGTGGAATGTTCGACGTTGATATCGATTCTCTTCTTAAAAGTCAAACTGTAAGAGAGTTTGATTCACAATTTACGGTGAAACAATTCGGCTATAAAGATGTAGAGGATTATTATTCCAACGCAACTATACATGACAAATTACATTTGATTGACGTACCATTATTGTGTCTTAGCGCTGCGGACGATCCATTTCAACCAGTTCAAGCCATACCGTTGAAGGAAATATCACAAACTAAAAAAATAGCTGTTGTTGTAACATCTCGTGGTGGGCATATTGGTTTCATGGAGGGTATGTGGCCGGTAAAAGAAGAACAATATATGGGTAAATTATTTTCACAGTTTTTTACCGCTCTGTTCACTACTAATTTAGAGCATCAATTATTGTGACGAACTTAATAAACTAAATACCAAATGCATTCACAAATATCAATATCAAATATTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_908#0 GTCGGATGGAGGTGAAGTGGCCTTGGATTGGGCAGAAGAGGGATGTTCGGCTGTTTCGCC 60 consensus_908#1 ---------------GCTTGCATTATTCCTCGGA-AAGTGGAATGTTCGAC------GTT 38 * ** ** * * *** ** ******* * * consensus_908#0 GATTGTGATTATTTTGCCAGGACTCACTGGCGCAAGTCAAGCGGAATATATCAAGTGCCT 120 consensus_908#1 GATATCGATTCTCTTCTTAAAAGTCAA-ACTGTAAGA-GAGTTTGATTCACAATTTACGG 96 *** **** * ** * * *** * *** ** ** * * * * consensus_908#0 TGTCTCA--TCAGCGAAAAAAGT-TGGGATACGATGCGTAATCTTCAATAATAGAGGTTT 177 consensus_908#1 TGAAACAATTCGGCTATAAAGATGTAGAGGATTATTATTCCAACGCAACTATACATGAC- 155 ** ** ** ** * *** * * * * ** * *** *** * * consensus_908#0 AGGAGGCGTAGAATTGAAGACTCCACGAACATATT---GCGCTGCAAATAGCGACGATTT 234 consensus_908#1 AAATTACATTTGATTGACG-TACCATTATTGTGTCTTAGCGCTGCGGACGATC-CATTTC 213 * * * ***** * *** * * * ******* * * ** consensus_908#0 AACAGAGGTTGTTGACTATGT-GAAGAAGATT---CATCCCAATGTGCTTCTTGGAGCGA 290 consensus_908#1 AACCAGTTCAAGCCATACCGTTGAAGGAAATATCACAAACTAAAAAAATAGCTGTTGTTG 273 *** * ** **** * ** ** * ** * ** * consensus_908#0 CGGGAA-TCTCGATGGGAGGATTAATTTTA-GGCAATTATTTAGCACGACAAGGGAAAAT 348 consensus_908#1 TAACATCTCGTGGTGGGCATATTGGTTTCATGGAGGGTATGTGGCCGGTAAAAGAAGAAC 333 * ** * **** *** *** * ** *** * ** * ** * * ** consensus_908#0 AGC-CAAAAATAAATTGAAAGGATGTTTCTTGATTTCTGTGCCATGGAACGTATTTGCCG 407 consensus_908#1 AATATATGGGTAAATTATTTTCACAGTTTTTTACCGCTCTGTT-CACTACTAATTTAGAG 392 * * ****** * ** ** * ** ** ** **** * consensus_908#0 CGACAAAGAGCACAGAGGAGAATTATTTTAACTTGATTTTAAATAAATATTTAGCCTTTT 467 consensus_908#1 CATCAA---TTATTGTGACGAACTTAATAAACTAAATACCAAATGCATTCACAA------ 443 * *** * * * *** * * **** ** **** ** * consensus_908#0 CACTTCGGCAACAAGTAAAACGCTTGCATTATTCCTCGGAAAGTGGAATGTTCGACGTTG 527 consensus_908#1 -ATATCAATATCAAATATTTCGT------------------------------------- 465 * ** * *** ** ** consensus_908#0 ATATCGATTCTCTTCTTA 545 consensus_908#1 ------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |