These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1000 fasta sequence [TTAAAGTTGATATGCAAGGAACAATCGTGGAACAAGGAACAACCAATTTTGGGGTTCATGTGGCAGGATTTCAATTGCATTCAACAATCCATGCTGCAAGACCTGATATAAAATGCATTGTTCATATTACCACTCCGTCCGTTACTGCTATCTCGTCATTGAAGTGCGGATTATTGCCAATAGGACANNNAAGTATAGTAATAGGAGAGGTAAGCACGCATCAATATATAGGTGGATTTTTTGAACCAGAGGAAAAAGAGAAGATAGCAAGAAATCTTGGTCCAATGAACAAAATCATGTTGTTAACGAATCGCGGTGCTCTCTGTTGTGGAGAAACTGTCGAAGAAGCTTTCTTCAATGTTTATAATATGGTCCTAGCTTGTGAGACTCAATTGAAATTAATGCCTGCCGGTTTGGATAATTTAAATCTTATTTCTGAAGAATCTAAAAAAGCTATATTCGAAGCTTCGAGAAAACCACCGACACCGCAACAAACAGTTCCAATCTCTGAAACTACAGCTCTTACTGAGAAACTTGAAAAGCGTTGGCGAATCGGTGGAACTGAATTCGNAGCTCTTATGCGGATGCTTGATAATGCTGGTTTCCGAACTGGTTATATATACAGAAATCCATTAGTGAAAGGAGAACCTCCGCGGCCTCGAAATGATGTAGAAGTACCGCCAGCGGTCTCGTCTTTAGGATATTTACTTGAAGAGGAAGAATTATATAAACAAGGACTTTGGAAAGGTGGTCGTAAAGGTACAGATAGATCACGTTGGTTAAATTCGCCCAATGTATATCAAAAGGTCGAGATACTTGAAACAGGAACTCCTGATCCGAAGAAAATAACAAAGGTAGAAGTCATCACTTTTGAGAATAAAGATGAGTAGATGTAACGGCGTGCTTCTATAATGAAAGATCAACAAAATTGATATAAATATAAAAGTATAAAGTAATGTATGGAAAAAAAGTGAAATTTGCGCAAGCATTACAACCATCT] [+] EMBL BI509166 [TTAAAGTTGATATGCAAGGAACAATCGTGGAACAAGGAACAACCAATTTTGGGGTTCATGTGGCAGGATTTCAATTGCATTCAACAATCCATGCTGCAAGACCTGATATAAAATGCATTGTTCATATTACCACTCCGTCCGTTACTGCTATCTCGTCATTGAAGTGCGGATTATTGCCAATAGGACANNNAAGTATAGTAATAGGAGAGGTAAGCACGCATCAATATATAGGTGGATTTTTTGAACCAGAGGAAAAAGAGAAGATAGCAAGAAATCTTGGTCCAATGAACAAAATCATGTTGTTAACGAATCGCGGTGCTCTCTGTTGTGGAGAAACTGTCGAAGAAGCTTTCTTCAATGTTTATAATATGGTCCTAGCTTGTGAGACTCAATTGAAATTAATGCCTGCCGGTTTGGATAATTTAAATCTTATTTCTGAAGAATCTAAAAAAGCTATATTCGAAGCTTCGAGAAAACCACCGACACCGCAACAAACAGTTCCAATCTCTGAAACTACAGCTCTTACTGAGAAACTTGAAAAGCGTTGGCGAATCGGTGGAACTGAATTCGNAGCTCTTATGCGGATGCTTGATAATG ] [+] EMBL BI509953 [ TTTATAATATGGTCCTAGCTTGTGAGACTCAATTGAAATTAATGCCTGCCGGTTTGGATAATTTAAATCTTATTTCTGAAGAATCTAAAAAAGCTATATTCGAAGCTTCGAGAAAACCACCGACACCGCAACAAACAGTTCCAATCTCTGAAACTACAGCTCTTACTGAGAAACTTGAAAAGCGTTGGCGAATCGGTGGAACTGAATTCGAAGCTCTTATGCGGATGCTTGATAATGCTGGTTTCCGAACTGGTTATATATACAGAAATCCATTAGTGAAAGGAGAACCTCCGCGGCCTCGAAATGATGTAGAAGTACCGCCAGCGGTCTCGTCTTTAGGATATTTACTTGAAGAGGAAGAATTATATAAACAAGGACTTTGGAAAGGTGGTCGTAAAGGTACAGATAGATCACGTTGGTTAAATTCGCCCAATGTATATCAAAAGGTCGAGATACTTGAAACAGGAACTCCTGATCCGAAGAAAATAACAAAGGTAGAAGTCATCACTTTTGAGAATAAAGATGAGTAGATGTAACGGCGTGCTTCTATAATGAAAGATCAACAAAATTGATATAAATATAAAAGTATAAAGTAATGTATGGAAAAAAAGTGAAATTTGCGCAAGCATTACAACCATCT] consensusID : consensus_910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [ATTTGTTATCACTATCACCACCACTTTCACATTTACCACTACTATCACTAACACTGTCACTATCGTCTTCGTCGTCACCACCGTCACCGCAACAAACAGTTCCAATCTCTGAAACTACAGCTCTTACTGAGAAACTTGAAAAGCGTTGGCGAATCGGTGGAACTGAATTCGAAGCTCTTATGCGGATGCTTGATAATGCTGGTTTCCGAACTGGTTATATATACAGAAATCCATTAGTGAAAGGAGAACCTCCGCGGCCTCGAAATGATGTAGAAGTACCGCCAGCGGTCTCGTCTTTAGGATATTTACTTGAAGAGGAAGAATTATATAAACAAGGACTTTGGAAAGGTGGTCGTAAAGGTACAGATAGATCACGTTGGTTAAATTCGCCCAATGTATATCAAAAGGTCGAGATACTTGAAACAGGAACTCCTGATCCGAAGAAAATAACAAAGGTAGAAGTCATCACTTTTGAGAATAAAGATGAGTAGATGTAACGGCGTGCTTCTATAATGAAAGATCAACAAAATTGATATAAATATAAAAGTATAAAGTAATGTATGGAAAAAAAGTGAAATTTGCG] [+] EMBL BI503378 [ATTTGTTATCACTATCACCACCACTTTCACATTTACCACTACTATCACTAACACTGTCACTATCGTCTTCGTCGTCACCACCGTCACCGCAACAAACAGTTCCAATCTCTGAAACTACAGCTCTTACTGAGAAACTTGAAAAGCGTTGGCGAATCGGTGGAACTGAATTCGAAGCTCTTATGCGGATGCTTGATAATGCTGGTTTCCGAACTGGTTATATATACAGAAATCCATTAGTGAAAGGAGAACCTCCGCGGCCTCGAAATGATGTAGAAGTACCGCCAGCGGTCTCGTCTTTAGGATATTTACTTGAAGAGGAAGAATTATATAAACAAGGACTTTGGAAAGGTGGTCGTAAAGGTACAGATAGATCACGTTGGTTAAATTCGCCCAATGTATATCAAAAGGTCGAGATACTTGAAACAGGAACTCCTGATCCGAAGAAAATAACAAAGGTAGAAGTCATCACTTTTGAGAATAAAGATGAGTAGATGTAACGGCGTGCTTCTATAATGAAAGATCAACAAAATTGATATAAATATAAAAGTATAAAGTAATGTATGGAAAAAAAGTGAAATTTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_910#0 TTAAAGTTGATATGCAAGGAACAATCGTGGAACAAGGAACAACCAATTTTGGGGTTCATG 60 consensus_910#1 ------------------------------------------------------------ consensus_910#0 TGGCAGGATTTCAATTGCATTCAACAATCCATGCTGCAAGACCTGATATAAAATGCATTG 120 consensus_910#1 ------------------------------------------------------------ consensus_910#0 TTCATATTACCACTCCGTCCGTTACTGCTATCTCGTCATTGAAGTGCGGATTATTGCCAA 180 consensus_910#1 ------------------------------------------------------------ consensus_910#0 TAGGACANNNAAGTATAGTAATAGGAGAGGTAAGCACGCATCAATATATAGGTGGATTTT 240 consensus_910#1 ------------------------------------------------------------ consensus_910#0 TTGAACCAGAGGAAAAAGAGAAGATAGCAAGAAATCTTGGTCCAATGAACAAAATCATGT 300 consensus_910#1 ------------------------------------------------------------ consensus_910#0 TGTTAACGAATCGCGGTGCTCTCTGTTGTGGAGAAACTGTCGAAGAAGCTTTCTTCAATG 360 consensus_910#1 ------------------------------------------------------------ consensus_910#0 TTTATAATATGGTCCTAGCTTGTGAGACTCAATTGAAATTAATGCCTGCCGGTTTGGATA 420 consensus_910#1 -------------------------------------ATTTGTTATCACTATCACCACCA 23 *** * * * consensus_910#0 ATTTAAATCTTATTTCTGAAGAATCTAAAAAAGCTATATTCGAAGCTTCGAGAAAACCAC 480 consensus_910#1 CTTTCACATTTACCACTACTATCACTAACACTGTCACTATCG--TCTTCGTCGTCACCAC 81 *** * *** ** **** * * * *** ***** ***** consensus_910#0 CGACACCGCAACAAACAGTTCCAATCTCTGAAACTACAGCTCTTACTGAGAAACTTGAAA 540 consensus_910#1 CGTCACCGCAACAAACAGTTCCAATCTCTGAAACTACAGCTCTTACTGAGAAACTTGAAA 141 ** ********************************************************* consensus_910#0 AGCGTTGGCGAATCGGTGGAACTGAATTCGNAGCTCTTATGCGGATGCTTGATAATGCTG 600 consensus_910#1 AGCGTTGGCGAATCGGTGGAACTGAATTCGAAGCTCTTATGCGGATGCTTGATAATGCTG 201 ****************************** ***************************** consensus_910#0 GTTTCCGAACTGGTTATATATACAGAAATCCATTAGTGAAAGGAGAACCTCCGCGGCCTC 660 consensus_910#1 GTTTCCGAACTGGTTATATATACAGAAATCCATTAGTGAAAGGAGAACCTCCGCGGCCTC 261 ************************************************************ consensus_910#0 GAAATGATGTAGAAGTACCGCCAGCGGTCTCGTCTTTAGGATATTTACTTGAAGAGGAAG 720 consensus_910#1 GAAATGATGTAGAAGTACCGCCAGCGGTCTCGTCTTTAGGATATTTACTTGAAGAGGAAG 321 ************************************************************ consensus_910#0 AATTATATAAACAAGGACTTTGGAAAGGTGGTCGTAAAGGTACAGATAGATCACGTTGGT 780 consensus_910#1 AATTATATAAACAAGGACTTTGGAAAGGTGGTCGTAAAGGTACAGATAGATCACGTTGGT 381 ************************************************************ consensus_910#0 TAAATTCGCCCAATGTATATCAAAAGGTCGAGATACTTGAAACAGGAACTCCTGATCCGA 840 consensus_910#1 TAAATTCGCCCAATGTATATCAAAAGGTCGAGATACTTGAAACAGGAACTCCTGATCCGA 441 ************************************************************ consensus_910#0 AGAAAATAACAAAGGTAGAAGTCATCACTTTTGAGAATAAAGATGAGTAGATGTAACGGC 900 consensus_910#1 AGAAAATAACAAAGGTAGAAGTCATCACTTTTGAGAATAAAGATGAGTAGATGTAACGGC 501 ************************************************************ consensus_910#0 GTGCTTCTATAATGAAAGATCAACAAAATTGATATAAATATAAAAGTATAAAGTAATGTA 960 consensus_910#1 GTGCTTCTATAATGAAAGATCAACAAAATTGATATAAATATAAAAGTATAAAGTAATGTA 561 ************************************************************ consensus_910#0 TGGAAAAAAAGTGAAATTTGCGCAAGCATTACAACCATCT 1000 consensus_910#1 TGGAAAAAAAGTGAAATTTGCG------------------ 583 ********************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |