These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 542 fasta sequence [ATCGAGGTGCATCTTCGTGGTGCACTACTACTCGTATTTCGCGGTTAAACACGTGGTCCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGGTACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTTCGCGTTTCCGACAGCGCAAAGACACAACGTTCTGCCAATTGTAATGGGTGCCCATCCAACGGACTATGCTCGAAGCGCGCCATACCGTTCTTACATCCACGTGGACGAGTTCGAATCGCCGAAAGAGTTGGCCGAGTATCTTCATCGTTTGGATCGAGACGACGAGCTGTATAATTCGTACTTTCGCTGGAAAGGTACCGGCGAATTCATCAACACGTACTTTTGGTGTCGCGTGTGCGCCA] [+] EMBL BI503295 [ATCGAGGTGCATCTTCGTGGTGCACTACTACTCGTATTTCGCGGTTAAACACGTGGTCCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGGTACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTTCGCGTTTCCGACAGCGCAAAGACACAACGTTCTGCCAATTGTAATGGGTGCCCATCCAACGGACTATGCTCGAAGCGCGCCATACCGTTCTTACATCCACGTGGACGAGTTCGAATCGCCGAAAGAGTTGGCCGAGTATCTTCATCGTTTGGATCGAGACGACGAGCTGTATAATTCGTACTTTCGCTGGAAAGGTACCGGCGAATTCATCAACACGTACTTTTGGTGTCGCGTGTGCGCCA] [+] EMBL BI511376 [ATCGAGGTGCATCTTCGTGGTGCACTACTACTCGTATTTCGCGGTTAAACACGTGGTCCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGGTACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAAC ] consensusID : consensus_924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [CCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGATACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTTCGCGTTTCCGACAGCGCAAAGGTATTCAACTTAACTGGCACCACGACCTTATCACGAAACAGTTTAGAATCCTTGGATCCATCAAAGAGACCTTGGTACATGAAAGGAGGGAGCAGAAGGCCTTATCCTGCCATAAAATCTCATCGTACTGGTCGAAGATTGGCGCGTTTGTGGCCCGACGAAGACGCTTATGACGATCGTGTTACCAATCAGTTAATGTACGTGCCCACTG] [+] EMBL BI508131 [CCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGATACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTTCGCGTTTCCGACAGCGCAAAGGTATTCAACTTAACTGGCACCACGACCTTATCACGAAACAGTTTAGAATCCTTGGATCCATCAAAGAGACCTTGGTACATGAAAGGAGGGAGCAGAAGGCCTTATCCTGCCATAAAATCTCATCGTACTGGTCGAAGATTGGCGCGTTTGTGGCCCGACGAAGACGCTTATGACGATCGTGTTACCAATCAGTTAATGTACGTGCCCACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_924#0 ATCGAGGTGCATCTTCGTGGTGCACTACTACTCGTATTTCGCGGTTAAACACGTGGTCCG 60 consensus_924#1 ---------------------------------------------------------CCG 3 *** consensus_924#0 GGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGGTACGACGCAT 120 consensus_924#1 GGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGATACGACGCAT 63 ************************************************* ********** consensus_924#0 GGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCC 180 consensus_924#1 GGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCC 123 ************************************************************ consensus_924#0 CTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAAT 240 consensus_924#1 CTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAAT 183 ************************************************************ consensus_924#0 CTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTT 300 consensus_924#1 CTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTT 243 ************************************************************ consensus_924#0 CGCGTTTCCGACAGCGCAAAGACACAACGTTCTGCCAATTGTAATGGGTGCCCATCCAAC 360 consensus_924#1 CGCGTTTCCGACAGCGCAAAGGTATTCAACTTAAC---TGGCACCACGACCTTATC--AC 298 ********************* * * * * * * * * *** ** consensus_924#0 GGACTATGCTCGAAGCGCGCCATACCGTTCTTACATCCACGTGGACGAGTTCGAATCGCC 420 consensus_924#1 GAAACAGTTTAGAATCCTTGGATCCATCAAAGAGACCTTGGTACATGAAAGGAGGGAGCA 358 * * * * *** * ** * * * * ** * ** ** consensus_924#0 GAAAGAGTTGGCCGAGTATCTTCATCGTTTGGATCGAGACGACGAGCTGTATAATTCGTA 480 consensus_924#1 GAAGGCCTTATCCTGCCATAAA-ATCTCATCGTACTGGTCGAAGATTGGCGCG-TTTGTG 416 *** * ** ** ** *** * * * * *** ** * ** ** consensus_924#0 CTTTCGCTGGAAAGGTACCGGCGAATTCATCAACACGTACTTTTGGTGTCGCGTGTGCGC 540 consensus_924#1 GCCCGACGAAGACGCTTATGACGATCGTGTTACCAATCAGTT--AATGT-ACGTGCCCAC 473 * * * * * *** * * ** * ** *** **** * * consensus_924#0 CA 542 consensus_924#1 TG 475 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |