These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 508 fasta sequence [GCGCACAATACACACGCACACACGCGAACCCCATCGATGTTTTCGCAAGATACTTTTTCTTTGTTTATTTATTGGCAAAATACGATTTATAATACTTGTCACTGGTAAGTTTGCACGATCTTGCTAAATCTATTAGATTGCTGGACGCAATGTTATTATCGCGGTCATTCGCGATCGTATTGACGTTGAATTTTCATTTTTTTTCTTTTTCCCTTGAGAAACGTTGTTGAACAATCTCGAGATATCGTTCTTTTTTTCGTGTGAAAACAGCGCGAACCATAAAAGTCATTGATCGATGAAATACAGAAGAAAAAAAAAAGAGTAAACAAACGCTTTGAAAAATGAAGTTTCATTTCGATCCTTTCTCGTCTTTAACCTAAACTTTAACCATTTGTCGCATTTAATACTATAATACGATGTTTCGTTATCCATCAAAAGAGAATAGTCGCCACTCGTTCTTCTTTTCTTTCATTCTCTCGAAATATAAGATCTAAAAAAATATATATAT] [+] EMBL BI516974 [GCGCACAATACACACGCACACACGCGAACCCCATCGATGTTTTCGCAAGATACTTTTTCTTTGTTTATTTATTGGCAAAATACGATTTATAATACTTGTCACTGGTAAGTTTGCACGATCTTGCTAAATCTATTAGATTGCTGGACGCAATGTTATTATCGCGGTCATTCGCGATCGTATTGACGTTGAATTTTCATTTTTTTTCTTTTTCCCTTGAGAAACGTTGTTGAACAATCTCGAGATATCGTTCTTTTTTTCGTGTGAAAACAGCGCGAACCATAAAAGTCATTGATCGATGAAATACAGAAGAAAAAAAAAAGAGTAAACAAACGCTTTGAAAAATGAAGTTTCATTTCGATCCTTTCTCGTCTTTAACCTAAACTTTAACCATTTGTCGCATTTAATACTATAATACGATGTT ] [+] EMBL BI515021 [ CCCATCGATGTTTTCGCAAGATACTTTTTCTTTGTTTATTTATTGGCAAAATACGATTTATAATACTTGTCACTGGTAAGTTTGCACGATCTTGCTAAATCTATTAGATTGCTGGACGCAATGTTATTATCGCGGTCATTCGCGATCGTATTGACGTTGAATTTTCATTTTTTTTCTTTTTCCCTTGAGAAACGTTGTTGAACAATCTCGAGATATCGTTCTTTTTTTCGTGTGAAAACAGCGCGAACCATAAAAGTCATTGATCGATGAAATACAGAAGAAAAAAAA AGTAAACAAACGCTTTGAAAAATGAAGTTTCATTTCGATCCTTTCTCGTCTTTAACCTAAACTTTAACCATTTGTCGCATTTAATACTATAATACGATGTTTCGTTATCCATCAAAAGAGAATAGTCGCCACTCGTTCTTCTTTTCTTTCATTCTCTCGAAATATAAGATCTAAAAAAATATATATAT] consensusID : consensus_929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [TTTTCTATTATTTTNNNTATAATTAATTTTTGAACACATATTTGTATAGTTTTCAATAGATGATACTTTCAATTGAAATGCACGCACGAGAATAGAAAGAATTGTGATTAGTTGAACGTGCGATAAAACGACGACGATCGTTATGTAACAAGACTCCAATGAATATTATAATTTCTGTGAGTTTCTGTAAGTTAATTTGTGATATTTTTATGCCCCAAGAATTATTTAAAATTCTCACAAACGTGGCACAAGAGTATCGTACGACAGCGCGAAGATTGGCAAACGTCCGAAACTTAAATAAAATCAATATATTACGACGATCATTGTTTCGTTGTCACGATGGTTTGATGATGATGATGATGATGGTCATACATATGCTCTTATATATACATATATATATATATTTTTTTAGATCTTATATTTCGAGAGAATGAAAGAAAAGAAGAACGAGTGGCGACTATTCTCTTTTGATGGATAACG] [+] EMBL BI516526 [TTTTCTATTATTTTNNNTATAATTAATTTTTGAACACATATTTGTATAGTTTTCAATAGATGATACTTTCAATTGAAATGCACGCACGAGAATAGAAAGAATTGTGATTAGTTGAACGTGCGATAAAACGACGACGATCGTTATGTAACAAGACTCCAATGAATATTATAATTTCTGTGAGTTTCTGTAAGTTAATTTGTGATATTTTTATGCCCCAAGAATTATTTAAAATTCTCACAAACGTGGCACAAGAGTATCGTACGACAGCGCGAAGATTGGCAAACGTCCGAAACTTAAATAAAATCAATATATTACGACGATCATTGTTTCGTTGTCACGATGGTTTGATGATGATGATGATGATGGTCATACATATGCTCTTATATATACATATATATATATATTTTTTTAGATCTTATATTTCGAGAGAATGAAAGAAAAGAAGAACGAGTGGCGACTATTCTCTTTTGATGGATAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_929#0 GCGCACAATACACACGCACACACGCGAACCCCATCGATGTTTTCGCAAGATACTTTTTCT 60 consensus_929#1 ------------------------------TTTTCTATTATTTTNNNT-ATAATTAATTT 29 ** ** *** *** ** * * consensus_929#0 TTGTTTATTTATTGGCAAAATA--CGATTTATAATACTTGTCACTGGTAAGTTTGCACGA 118 consensus_929#1 TTGAACACATATTTGTATAGTTTTCAATAGATGATACTTTCAATTGAAATGCACGCACGA 89 *** * **** * * * * * ** ** ****** * ** * * ****** consensus_929#0 TCTTGCTAAATCTATTAGATTGCTGGACG--CAATGTTATTATCGCGGTCATTCGCGATC 176 consensus_929#1 GAATAGAAAGAATTGTGATTAGTTGAACGTGCGATAAAACGACGACGATCGTTATGTAAC 149 * ** * * * * ** *** * ** * * ** ** ** * * consensus_929#0 GTATTGACGTTGAATTTTCATTTTTTTTCTTTTTCCCTTGAGAAACGTTGTTGAACAATC 236 consensus_929#1 AAGACTCCAATGAATATTATAATTTCTGTGAGTTTCTGTAAGTTAATTTGTGATA---TT 206 * ***** ** *** * ** * * ** * **** * * consensus_929#0 TCGAGATATCGTTCTTTTTTTCGTGTGAAAACAGCGCGAACCATAAAAGTCATTGATCGA 296 consensus_929#1 TTTATGCCCCAAGAATTATTTAAAATTCTCACAA-ACGTGGCACAAGAGT-ATCGTACGA 264 * * * ** *** * *** ** ** ** *** ** * *** consensus_929#0 TGAAATACAGAAGAAAAAAAAAAGAGTAAACAAACGCTTTGAAAAATGAAGTTTCATTTC 356 consensus_929#1 CAGCGCGAAGATTGGCAAACGTCCGAAACTTAAAT------AAAATCAATATATTACGAC 318 *** *** * *** **** * * * * * consensus_929#0 GATCCTT-TCTCGTCTTTAACCTAAACTTTAACCATTTGTCGCATTTAATACTATAATAC 415 consensus_929#1 GATCATTGTTTCGTTGTCA--CGATGGTTTGATGATG----ATGATGATGATGGTCATAC 372 **** ** * **** * * * * *** * ** * * * * **** consensus_929#0 GATGTTTCGTTATCCATCAAAAGAGA-ATAGTCGCCACTCGTTCTTCTTTTCTTTCATTC 474 consensus_929#1 -ATATGCTCTTATATATACATATATATATATATTTTTTTAGATCTTATATTTCGAGAGAA 431 ** * **** ** * * * * *** * * **** * ** * consensus_929#0 TCTCGAAATATAAGATCTAAAAAAATATATATAT--------------- 508 consensus_929#1 TGAAAGAAAAGAAGAACGAGTGGCGACTATTCTCTTTTGATGGATAACG 480 * ** * **** * * *** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |