These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGTTACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCATTCATGGAATTTTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTATTGCTCGCGCAAGAAAAGATTTCTTGATCCGCCATCATCTGGATCGTACTACTGGCGTGGGCGATGGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGAGAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAACAGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTGTGACTGAACGTCGATCACCTAAACGTCA] [+] EMBL BI509807 [TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGTTACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCATTCATGGAATTTTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTATTGCTCGCGCAAGAAAAGATTTCTTGATCCGCCATCATCTGGATCGTACTACTGGCGTGGGCGATGGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGAGAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAACAGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTGTGACTGAACGTCGATCACCTAAACGTCA] consensusID : consensus_937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 582 fasta sequence [GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTCATTTATTA] [-] EMBL BI505595 [GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTC ] [-] EMBL BI506777 [ GCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTCATTTATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_937#0 TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGA 60 consensus_937#1 ---------------GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGA 45 *********************************** ********* consensus_937#0 GCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGA 120 consensus_937#1 GCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGA 105 *************************************************** ****** consensus_937#0 GGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCT 180 consensus_937#1 GGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCT 165 ************************************************************ consensus_937#0 TGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGT 240 consensus_937#1 TGCCAGGCCAGTACACTATT-----CCACTCTCAAACGTCATTTTCAATGTCGCTACTG- 219 ******* ***** * * * * ** ** ** *** * * consensus_937#0 TACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCAT 300 consensus_937#1 -ACGATCGAAATCGACAG---TAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTA- 274 ** ** ** ** * ** * ** ** * * ** * consensus_937#0 TCATGGAATT-TTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTA-TTGCTCGCGCA 358 consensus_937#1 --ACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGA 332 * * ** * * ** * ** * *** ** ** * *** * * consensus_937#0 AGAAAAGATTTCTTGAT----CCGCCATCATCTGGATCGTACTACTGGCGTGGGCGA--T 412 consensus_937#1 ATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACAT 392 * **** * * ** ** * * ** * ** ** * * consensus_937#0 GGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGA 472 consensus_937#1 GGCATACGATTACTTTATTCGTCGACTACACGATTTAA-TCGATCATTTTTC-ATGTTTA 450 ** ** * * * * * *** * ** * * * ** * * ** * consensus_937#0 GAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAAC 532 consensus_937#1 CACAAG-TAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTG 509 * ** * * ** * * ** * ** *** * * ** consensus_937#0 AGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTG--TGACTGAACG--TCGATC 588 consensus_937#1 CGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATA 569 ** * ** * * * * * * ** * * * * ** * *** consensus_937#0 ACCTAAAC-GTCA 600 consensus_937#1 ATTTCATTTATTA 582 * * * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |