These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_967#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 652 fasta sequence [TTTATTTCTAATCGTGAACAACCAAAGAGAAAAAATATTTGATAATGATTGAAAGCCGATTCACACTGCGACACGTCGAGTCTCGGCAATACACGCTAAAAAACATCTATATAGAGAAGGATTTAATATATTGAATCTATTTATAA-ATATATATATTCCTGTTATAATAATATTTGTATGCTACAATAAGAGGCTCCTATATGAATATTATTATAATTCACATTCTATACATATACATATATTAATACTATTAATTATATTATATTTATATTATATATTATATGTGTATAATAATATTAATATATTGTCAAATATATAAATATTTATGATCAATCAACGACATGATACGACAATTGCATTTTAATATTGCCGCCTAGTGGGGATCGGCTTTATATTTTCGCAAAAGAATTATTTTTCTTTTGCATAAGAACTTATTTTTTAATATTTCAATCAAAGATATAAATATCACGAATACTTTTATAAATCGAAAATGAATAGTGCAAAATTGAAATCGGGCATTCTACAATGTTGTGTATTCAAATAAAAAAAATTATATATTTCCAAGGCAATTATCCTTGGAAACAAATACTTACTTGGAAGAAGTAAATGACGGATAATTTTATTTGCTCTAAGCAAAATTGTTGTGTAAAAG] [+] EMBL BI509980 [TTTATTTCTAATCGTGAACAACCAAAGAGAAAAAATATTTGATAATGATTGAAAGCCGATTCACACTGCGACACGTCGAGTCTCGGCAATACACGCTAAAAAACATCTATATAGAGAAGGATTTAATATATTGAATCTATTTATAATATATATATATTCCTGTTATAATAATATTTGTATGCTACAATAAGAGGCTCCTATATGAATATTATTATAATTCACATTCTATACATATACATATATTAATACTATTAATTATATTATATTTATATTATATATTATATGTGTATAATAATATTAATATATTGTCAAATATATAAATATTTATGATCCATCAACGACATGATACGACAATTGCATTTTAATATTGCCGCCTAGTGGGGATCGGCTTTATATTTTCGCAAAAGAATTATTTTTCTTTTGCATAAGAACTTATTTTTTAATATTTCAATCAAAGATATAAATATCACGAATACTTTTATAAATCGAAAATGAATAGTGCAAAATTGAAATCGGGCATTCTACAATGTTGTGTATTCAAATAAAAAAAATTATATATTTCCAAGGCAATTATCCTTGGAAACAAATACTTACTTGGAAGAAGTAAATGACGGATAATTTTATTTGCTCTAAGCAAAATTGTTGTGTAAAAG] [+] EMBL BI503164 [ CGTCGAGTCTCGGCAATACACGCTAAAAAACATCTATATAGAGAAGGATTTAATATATTGAATCTATTTAT A ATATATATATTCCTGTTATAATAATATTTGTATGCTACAATAAGAGGCTCCTATATGAATATTATTATAATTCACATTCTATACATATACATATATTAATACTATTAATTATATTATATTTATATTATATATTATATGTGTATAATAATATTAATATATTGTCAAATATATAAATATTTATGATCAATCAACGACATGATACGACAATTGCATTTTAATATTGCCGCCTAGTGGGGATCGGCTTTATATTTTCGCAAAAGAATTATTTTTCTTTTGCATAAGAACTTATTTTTTAATATTTCAATCAAAGATATAAATATCACGAATACTTTTATAAATCGAAAATGAATAGTGCAAAATTGAAATCGGGCATTCTACAATGTTGTGTATTCAAAT AAAAAAATTATATATTTCCAAGGCAATTATCCTTGGAAACAAATACTTACTTGGAAGAAGTAAATGACGGAT ] consensusID : consensus_967#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTATTAAATGTTTTTATTATTAAGAGGGAATTTCGGAGTACACAAGACTATCTAGTGAAGTCGATTTGGAACATGGGTGGTCTGCTAGAAACAAAAATACCACGCATCATAATGACCACACTAGATCGCTCTTCGTTTATTGCACATCACACACCGTTCGAAAACCGTTTACATTAAAGGGTGTACACAGCGCACGAATACTTTTATAAATCGAAAATGAATAGTGCAAAATTGAAATCGNNNNTTCTACAATGTTGTGTATTCAAATAAAAAAATTATATATTTCCAAGGCAATTATCCTTGGAAACAAATACTTACTTGGAAGAAGTAAATGACGGATAATTT] [-] EMBL BI509357 [TTTTTTTTTTTTTTTTTTTTTTTTTATTAAATGTTTTTATTATTAAGAGGGAATTTCGGAGTACACAAGACTATCTAGTGAAGTCGATTTGGAACATGGGTGGTCTGCTAGAAACAAAAATACCACGCATCATAATGACCACACTAGATCGCTCTTCGTTTATTGCACATCACACACCGTTCGAAAACCGTTTACATTAAAGGGTGTACACAGCGCACGAATACTTTTATAAATCGAAAATGAATAGTGCAAAATTGAAATCGNNNNTTCTACAATGTTGTGTATTCAAATAAAAAAATTATATATTTCCAAGGCAATTATCCTTGGAAACAAATACTTACTTGGAAGAAGTAAATGACGGATAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_967#0 TTTATTTCTAATCGTGAACAACCAAAGAGAAAAAATATTTGATAATGATTGAAAGCCGAT 60 consensus_967#1 ------------------------------------------------------------ consensus_967#0 TCACACTGCGACACGTCGAGTCTCGGCAATACACGCTAAAAAACATCTATATAGAGAAGG 120 consensus_967#1 ------------------------------------------------------------ consensus_967#0 ATTTAATATATTGAATCTATTTATAAATATATATATTCCTGTTATAATAATATTTGTATG 180 consensus_967#1 ------------------------------------------------------------ consensus_967#0 CTACAATAAGAGGCTCCTATATGAATATTATTATAATTCACATTCTATACATATACATAT 240 consensus_967#1 ------------------------------------------------------------ consensus_967#0 ATTAATACTATTAATTATATTATATTTATATTATATATTATATGTGTATAATAATATTAA 300 consensus_967#1 -----------TTTTTTTTTTTTTTTTTTTTTTTTTATTAAATGTTTTTATTATTAAGAG 49 * ** * ** * *** * ** * ***** **** * ** ** ** * consensus_967#0 TATATTGTCAAATATATAAATATTTATGATCAATCAACGACATGATACGACAATTGCATT 360 consensus_967#1 GGAATTTCGGAGTACACAAGACTATCTAGTGAA--GTCGATTTGGAACATGGGTGGTCTG 107 *** * ** * ** * * * * ** *** ** ** * * * consensus_967#0 TTAATATTGCCGCCTAGTGGGGATCGGCTTTATATTTTCGCAAAAGAATTATTTTTCTTT 420 consensus_967#1 CTAGAAACAA-AAATACCACGCATCA---TAATGACCACACTAGATCGCTCTTCGTTTAT 163 ** * ** * *** * ** * * * * * ** * * * consensus_967#0 TGCATAAGAACTTATTTTTTAATA----TTTCAATCAAAGATATAAATATC--ACGAATA 474 consensus_967#1 TGCACATCACACACCGTTCGAAAACCGTTTACATTAAAGGGTGTACACAGCGCACGAATA 223 **** * * ** ** * ** ** * ** * * ** * * * ******* consensus_967#0 CTTTTATAAATCGAAAATGAATAGTGCAAAATTGAAATCGGGCATTCTACAATGTTGTGT 534 consensus_967#1 CTTTTATAAATCGAAAATGAATAGTGCAAAATTGAAATCGNNNNTTCTACAATGTTGTGT 283 **************************************** **************** consensus_967#0 ATTCAAATAAAAAAAATTATATATTTCCAAGGCAATTATCCTTGGAAACAAATACTTACT 594 consensus_967#1 ATTCAAATAAAAAAA-TTATATATTTCCAAGGCAATTATCCTTGGAAACAAATACTTACT 342 *************** ******************************************** consensus_967#0 TGGAAGAAGTAAATGACGGATAATTTTATTTGCTCTAAGCAAAATTGTTGTGTAAAAG 652 consensus_967#1 TGGAAGAAGTAAATGACGGATAATTT-------------------------------- 368 ************************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |