These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1579 fasta sequence [CGTCCGCGCGTGCATGTCGTTGCATTGCCACCACCGGACGGAGCAACGACGACCGGGCACCATCTCCGGCCGGCCGGGCACGGGCAGACATCGCCAGCTATCATCTGGCCATCGCCTACGGTGAGCAGTCATCGTCGTCCATCCGATCGAATCGCCCCTACTCCACGCGGGTGTCGCCGGCCGCCGCGGTTCGTGGTCCGCCATGAAGCCGGGATTGCTGAAGTCTCGGCGGAGCAGCGCCGGGGACGAGGAGGAGGGATCTGGCGGCAGCGGCGGCCTCCCCACGGCGACACGGAAGGAGTGGTGCTGGTCGTTGGGGATTCTCCTCAAGGCCGTGGCGGCGCTGCTGATCCTGATGGCCGGCGTGCTGATCGGCCTGGCCACCAGCGCGAGCCTGTCCTGCTACTACGTCGAGGGCAGCGGCAAGCAGGCGGAGGCGCGGCGCGGAGATGGAGGCGGCGGGGAAGGGGGGTCACGGTGTCGCGACGACGGGTGTGGCGCGGCGCTGAGCTTCCAGCGGTTCGTGCAACCGCACCCGCCATGGGGGCACTCGATGAAGGACGAGGAGCTGTTCTGGCGCGCGTCCATGGCGCCGCGCGTGGAGGAGTACCCGTACCAGCGCGTGCCCAAGGTGGCGTTCCTGTTCCTGACGCGCGGGCCGCTGCCGTTCGCGCCGCTGTGGGAGCGGTTTTTCCACGGGCACGAGGGGCTCTACTCCGTGTACGTGCACGCCCTGCCAGAGTACAGGCTGAACGTGTCGTCGTCGTCGCCGTTCCACGGCCGGCAGATCCCGAGCGGCGACGTGTCGTGGGGCTCCATCACGCTGGTGGACGCCGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGAGCGGTTCGTGCTCGCCTCCGAGAGCTGCGTGCCGGTGTTCAACTTCCCGACGGTGTACGAGTACCTGGTGAACTCGGCGCAGAGCTACGTGGAGTCGTACAACATCGACGTGCCGCAGTGCGCGGGGCGGTACAACCCGCGCATGGCGCCCGACGTGCTGGAGGAGCAGTGGCGGAAGGGGTCCGAGTGGTTCGAGATGAGCCGAGACCTCGCCGCCGACATCGTCGCCGACCGGAAGTACCATGCCATCTTCCGCAAGCACTGCACGCCGTCGTGCTACCCGGACGAGCACTACATCCCGACGTACCTGCACCTCCGCCACGGCGCGCGCAACGCCAACCGCACAGTCACCTGGGTGGACTGGTCGCGCGGCGGGCCGCACCCCGCGCGGTTCGGCAAGGCCACCGTCACGCCGGCGTTCGTGCAGGCCATCCGCAACAACGGGACGCGCTGCGCGTACAACGGCAAGCCCACCACCGTGTGCTACCTGTTCGCCCGCAAGTTCGCGCCCAGCGCGCTCGGGCCGCTGCTCAACATGTCCACCACGCTCCTCGAATTCTGACATTTTTTTTTTGTACTTCTCCGGTACTACTAGTAGTTTGTTAGCTGATCGATGGATGATTCCTTCCATGTAAATTTCTGTCTGTCATCCCGACTATCCTTAATTCTCCCAAATTTGCCTCAAAATGAATATACCTCA] [+] EMBL AK121455 [CGTCCGCGCGTGCATGTCGTTGCATTGCCACCACCGGACGGAGCAACGACGACCGGGCACCATCTCCGGCCGGCCGGGCACGGGCAGACATCGCCAGCTATCATCTGGCCATCGCCTACGGTGAGCAGTCATCGTCGTCCATCCGATCGAATCGCCCCTACTCCACGCGGGTGTCGCCGGCCGCCGCGGTTCGTGGTCCGCCATGAAGCCGGGATTGCTGAAGTCTCGGCGGAGCAGCGCCGGGGACGAGGAGGAGGGATCTGGCGGCAGCGGCGGCCTCCCCACGGCGACACGGAAGGAGTGGTGCTGGTCGTTGGGGATTCTCCTCAAGGCCGTGGCGGCGCTGCTGATCCTGATGGCCGGCGTGCTGATCGGCCTGGCCACCAGCGCGAGCCTGTCCTGCTACTACGTCGAGGGCAGCGGCAAGCAGGCGGAGGCGCGGCGCGGAGATGGAGGCGGCGGGGAAGGGGGGTCACGGTGTCGCGACGACGGGTGTGGCGCGGCGCTGAGCTTCCAGCGGTTCGTGCAACCGCACCCGCCATGGGGGCACTCGATGAAGGACGAGGAGCTGTTCTGGCGCGCGTCCATGGCGCCGCGCGTGGAGGAGTACCCGTACCAGCGCGTGCCCAAGGTGGCGTTCCTGTTCCTGACGCGCGGGCCGCTGCCGTTCGCGCCGCTGTGGGAGCGGTTTTTCCACGGGCACGAGGGGCTCTACTCCGTGTACGTGCACGCCCTGCCAGAGTACAGGCTGAACGTGTCGTCGTCGTCGCCGTTCCACGGCCGGCAGATCCCGAGCGGCGACGTGTCGTGGGGCTCCATCACGCTGGTGGACGCCGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGAGCGGTTCGTGCTCGCCTCCGAGAGCTGCGTGCCGGTGTTCAACTTCCCGACGGTGTACGAGTACCTGGTGAACTCGGCGCAGAGCTACGTGGAGTCGTACAACATCGACGTGCCGCAGTGCGCGGGGCGGTACAACCCGCGCATGGCGCCCGACGTGCTGGAGGAGCAGTGGCGGAAGGGGTCCGAGTGGTTCGAGATGAGCCGAGACCTCGCCGCCGACATCGTCGCCGACCGGAAGTACCATGCCATCTTCCGCAAGCACTGCACGCCGTCGTGCTACCCGGACGAGCACTACATCCCGACGTACCTGCACCTCCGCCACGGCGCGCGCAACGCCAACCGCACAGTCACCTGGGTGGACTGGTCGCGCGGCGGGCCGCACCCCGCGCGGTTCGGCAAGGCCACCGTCACGCCGGCGTTCGTGCAGGCCATCCGCAACAACGGGACGCGCTGCGCGTACAACGGCAAGCCCACCACCGTGTGCTACCTGTTCGCCCGCAAGTTCGCGCCCAGCGCGCTCGGGCCGCTGCTCAACATGTCCACCACGCTCCTCGAATTCTGACATTTTTTTTTTGTACTTCTCCGGTACTACTAGTAGTTTGTTAGCTGATCGATGGATGATTCCTTCCATGTAAATTTCTGTCTGTCATCCCGACTATCCTTAATTCTCCCAAATTTGCCTCAAAATGAATATACCTCA] consensusID : consensus_100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence [GGGATCCATAACACTCATGGACGCCGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGATCGGTTCGTCCTCCTCTCCGAGAGCTGCATACCGGTGCAGAGCTTCCCGGTGGCGTACGGCTACCTCACCGGCTCGCGCCACAGCTTCGTGGAGGTCTACTACCACAAGGGCAAGACGTGCCGCGGCCGGTACAGCCGCCGCATGGAGCCGGACATCACGCTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAGGCGAGACCTCGCCGTGGCCGCCCTGACGGACGCCAGGTACTACCCGCTCTTCCGGCGGCACTGCCGGCCGTCGTGCTACCCCGACGAGCACTACCTCCCGACGTTCGTCGCCATGCTCCACGGCGCGGACAACTCGAACCGCACCGTGACGTACGTCGACTGGTCCAGAGGCGGCGCGCACCCGGCGACGTACACCGCCGGCGACGTCACGCCGGAGCTGATCCTGAGCATCAGGAGGAGCGAGGTGCCCTGCATGTACAACTCCCGGCCGACCACGGCGTGCTTCCTGTTCGCGAGGAAGTTCTCCGCCGACGCGCTGGAGCCGCTGCTCAACATCTCATCGACGGTGATGCAGTACTAGTTCTCCTCGCCGCCAACTATTGTTTGTAACATAGGATTTCACACAACATATTCAGGTACCAATTGTACCTGTCAAGCAAAAGGGGAAAAAGAAGAAGAAAGTGTTC] [+] EMBL AK105949 [GGGATCCATAACACTCATGGACGCCGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGATCGGTTCGTCCTCCTCTCCGAGAGCTGCATACCGGTGCAGAGCTTCCCGGTGGCGTACGGCTACCTCACCGGCTCGCGCCACAGCTTCGTGGAGGTCTACTACCACAAGGGCAAGACGTGCCGCGGCCGGTACAGCCGCCGCATGGAGCCGGACATCACGCTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAGGCGAGACCTCGCCGTGGCCGCCCTGACGGACGCCAGGTACTACCCGCTCTTCCGGCGGCACTGCCGGCCGTCGTGCTACCCCGACGAGCACTACCTCCCGACGTTCGTCGCCATGCTCCACGGCGCGGACAACTCGAACCGCACCGTGACGTACGTCGACTGGTCCAGAGGCGGCGCGCACCCGGCGACGTACACCGCCGGCGACGTCACGCCGGAGCTGATCCTGAGCATCAGGAGGAGCGAGGTGCCCTGCATGTACAACTCCCGGCCGACCACGGCGTGCTTCCTGTTCGCGAGGAAGTTCTCCGCCGACGCGCTGGAGCCGCTGCTCAACATCTCATCGACGGTGATGCAGTACTAGTTCTCCTCGCCGCCAACTATTGTTTGTAACATAGGATTTCACACAACATATTCAGGTACCAATTGTACCTGTCAAGCAAAAGGGGAAAAAGAAGAAGAAAGTGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_100#0 CGTCCGCGCGTGCATGTCGTTGCATTGCCACCACCGGACGGAGCAACGACGACCGGGCAC 60 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CATCTCCGGCCGGCCGGGCACGGGCAGACATCGCCAGCTATCATCTGGCCATCGCCTACG 120 consensus_100#1 ------------------------------------------------------------ consensus_100#0 GTGAGCAGTCATCGTCGTCCATCCGATCGAATCGCCCCTACTCCACGCGGGTGTCGCCGG 180 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CCGCCGCGGTTCGTGGTCCGCCATGAAGCCGGGATTGCTGAAGTCTCGGCGGAGCAGCGC 240 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CGGGGACGAGGAGGAGGGATCTGGCGGCAGCGGCGGCCTCCCCACGGCGACACGGAAGGA 300 consensus_100#1 ------------------------------------------------------------ consensus_100#0 GTGGTGCTGGTCGTTGGGGATTCTCCTCAAGGCCGTGGCGGCGCTGCTGATCCTGATGGC 360 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CGGCGTGCTGATCGGCCTGGCCACCAGCGCGAGCCTGTCCTGCTACTACGTCGAGGGCAG 420 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CGGCAAGCAGGCGGAGGCGCGGCGCGGAGATGGAGGCGGCGGGGAAGGGGGGTCACGGTG 480 consensus_100#1 ------------------------------------------------------------ consensus_100#0 TCGCGACGACGGGTGTGGCGCGGCGCTGAGCTTCCAGCGGTTCGTGCAACCGCACCCGCC 540 consensus_100#1 ------------------------------------------------------------ consensus_100#0 ATGGGGGCACTCGATGAAGGACGAGGAGCTGTTCTGGCGCGCGTCCATGGCGCCGCGCGT 600 consensus_100#1 ------------------------------------------------------------ consensus_100#0 GGAGGAGTACCCGTACCAGCGCGTGCCCAAGGTGGCGTTCCTGTTCCTGACGCGCGGGCC 660 consensus_100#1 ------------------------------------------------------------ consensus_100#0 GCTGCCGTTCGCGCCGCTGTGGGAGCGGTTTTTCCACGGGCACGAGGGGCTCTACTCCGT 720 consensus_100#1 ------------------------------------------------------------ consensus_100#0 GTACGTGCACGCCCTGCCAGAGTACAGGCTGAACGTGTCGTCGTCGTCGCCGTTCCACGG 780 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CCGGCAGATCCCGAGCGGCGACGTGTCGTGGGGCTCCATCACGCTGGTGGACGCCGAGAA 840 consensus_100#1 ------------------------------GGGATCCATAACACTCATGGACGCCGAGAA 30 *** ***** ** ** ************* consensus_100#0 GCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGAGCGGTTCGTGCTCGCCTCCGA 900 consensus_100#1 GCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGATCGGTTCGTCCTCCTCTCCGA 90 *************************************** ******** *** ****** consensus_100#0 GAGCTGCGTGCCGGTGTTCAACTTCCCGACGGTGTACGAGTACCTGGTGAACTCGGCGCA 960 consensus_100#1 GAGCTGCATACCGGTGCAGAGCTTCCCGGTGGCGTACGGCTACCTCACCGGCTCGCGCCA 150 ******* * ****** * ******* ** ***** ***** **** ** consensus_100#0 GAGCTACGTGGAGTCGTACAACATCGACGTGCCGCAGTGCGCGGGGCGGTACAACCCGCG 1020 consensus_100#1 CAGCTTCGTGGAGGTCTACTACCACAAGGGCAAGACGTGCCGCGGCCGGTACAGCCGCCG 210 **** ******* *** ** * * * * **** ** ******* ** ** consensus_100#0 CATGGCGCCCGACGTGCTGGAGGAGCAGTGGCGGAAGGGGTCCGAGTGGTTCGAGATGAG 1080 consensus_100#1 CATGGAGCCGGACATCACGCTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAG 270 ***** *** *** * * * ******* ******* *** *********** * ** consensus_100#0 CCGAGACCTCGCCGCCGACATCGTCGCCGACCGGAAGTACCATGCCATCTTCCGCAAGCA 1140 consensus_100#1 GCGAGACCTCGCCGTGGCCGCCCTGACGGACGCCAGGTACTACCCGCTCTTCCGGCGGCA 330 ************* * * * * * *** * **** * * ******* *** consensus_100#0 CTGCACGCCGTCGTGCTACCCGGACGAGCACTACATCCCGACGTACCTGCACCTCCGCCA 1200 consensus_100#1 CTGCCGGCCGTCGTGCTACCCCGACGAGCACTACCTCCCGACGTTCGTCGCCATGCTCCA 390 **** *************** ************ ********* * * * * * *** consensus_100#0 CGGCGCGCGCAACGCCAACCGCACAGTCACCTGGGTGGACTGGTCGCGCGGCGGGCCGCA 1260 consensus_100#1 CGGCGCGGACAACTCGAACCGCACCGTGACGTACGTCGACTGGTCCAGAGGCGGCGCGCA 450 ******* **** * ******** ** ** * ** ******** * ***** **** consensus_100#0 CCCCGCGCGGTTCGGCAAGGCCACCGTCACGCCGGCGTTCGTGCAGGCCATCCGCAACAA 1320 consensus_100#1 CCCGGCGACGTACACCGCCGGCGACGTCACGCCGGAGCTGATCCTGAGCATCAGGAGGAG 510 *** *** ** * * * * *********** * * * * * **** * * * consensus_100#0 CGGGACGCGCTGCGCGTACAACGGCAAGCCCACCACCGTGTGCTACCTGTTCGCCCGCAA 1380 consensus_100#1 CGAGGTGCCCTGCATGTACAACTCCCGGCCGACCACGGCGTGCTTCCTGTTCGCGAGGAA 570 ** * ** **** ******* * *** ***** * ***** ********* * ** consensus_100#0 GTTCGCGCCCAGCGCGCTCGGGCCGCTGCTCAACATGTCCACCACGCTCCTCGAATTCTG 1440 consensus_100#1 GTTCTCCGCCGACGCGCTGGAGCCGCTGCTCAACATCTCATCGACGGTGATGCAGTACTA 630 **** * ** ****** * *************** ** * *** * * * * ** consensus_100#0 ACATTTTTTTTTTGTACTTCTCCGGTACTACTAGTAGTTTGTTAGCTGATCGATGGATGA 1500 consensus_100#1 G----TTCTCCTCGC---CGCCAACTATTGTTTGTAACATAGGATTTCAC------ACAA 677 ** * * * * ** * * *** * * * * * * consensus_100#0 TTCCTTCCATGTAAATTTCTGTCTGTCATCCCGACTATCCTTAATTCTCCCAAATTTGCC 1560 consensus_100#1 CATATTCAGGTACCAATTGTACCTGTCAAGCAAAAGGGGAAAAAGAAGAAGAAAGTGTTC 737 *** * ** * ****** * * ** *** * * consensus_100#0 TCAAAATGAATATACCTCA 1579 consensus_100#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||