These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence [CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGATACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTATCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTTCGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCGGCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCACCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAGGATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTGGAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGTGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAACCACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCAT] [+] EMBL CB646085 [CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGATACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTATCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTTCGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCGGCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCACCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAGGATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTGGAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGTGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAACCACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCAT] consensusID : consensus_1000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [ATACGCTACGTAACGGCATGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGGGAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGGGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAACCACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC] [+] EMBL CF277113 [ATACGCTACGTAACGGCATGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGGGAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGGGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAACCACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1000#0 CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGAT 60 consensus_1000#1 ------------------------------------------------------------ consensus_1000#0 ACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTA 120 consensus_1000#1 ------------------------------------------------------------ consensus_1000#0 TCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTT 180 consensus_1000#1 ------------------------------------------------------------ consensus_1000#0 CGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCG 240 consensus_1000#1 ------------------------------------------------------------ consensus_1000#0 GCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCA 300 consensus_1000#1 ------------------------------------------ATACGCTACGTAACGGCA 18 * * ** * * ** consensus_1000#0 CCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAG 360 consensus_1000#1 TGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT------TTT 72 * * * * * * * * * *** consensus_1000#0 GATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGC 420 consensus_1000#1 TTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGC 132 **** ***************************************************** consensus_1000#0 CCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTG 480 consensus_1000#1 CCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGG 192 ************************* ****************** ************* * consensus_1000#0 GAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCG 540 consensus_1000#1 GAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCG 252 ************* ********************************************** consensus_1000#0 CAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTG 600 consensus_1000#1 CAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTG 312 ******** * ************************************************* consensus_1000#0 TGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAAC 660 consensus_1000#1 GGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAAC 372 ******** ************ ****************************** ****** consensus_1000#0 CACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCAC 720 consensus_1000#1 CACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCAC 432 ***** ********* ******************************************** consensus_1000#0 CCACAACTGTCGGGGCAT------------------------------- 738 consensus_1000#1 CCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC 481 ****************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||