These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 824 fasta sequence [ACTTCCATCTCCTATCTTCTTCCCTTCCAAAACCCCCATCTCATCCCACTCCGGCGTCTCCTCCGCCGACGTCGCCATGGGGCAAGCCTGGGCGTCTCTCCAGGATAAACTCCAAGGGAGGCAATGGAAGGAGAAGCAGGTGAGGAAGATCACGGACAAGGTGTTCGACCGCCTCACCGAGGACACCAAGAAGCGCGAGCAGGAGGCCCTCACCTTCGAGGAGGTCTACATCGCCGTCCTCTGCGTCTACAACGACATCAACAAGTAC-TTACCAGGGCCGCACTATGATCCGCCCTCCAAGGAGAAGCTCAAGGCCATGATGAATGAGTACGACATCAACCTGGACGGGCTCCTGGACCGGGAGGAGTTCGCGGAGTTCATCCGGAAGCTGACGGCGGAGTCGCTGTGCGCGATC-AGCTTCAAGCTGCTGGTGACG-CTGGTGGCGGC-GCCGGCGCTGGCGCTGGCGACCAAGAGGGCGACGGAGGGCGTGCCCGGCGTCGGCAGGGTGGTGCGCAAGGTGCCCAACTCCATCTACGCCTCCGTCATCACCCTCGGCGTCGTCATGGCCCAGAAATCCA-CCGAGGGCGTCGAGTAGACGGCCATCCGATTCGAGCCTGCGAGATTCAGAGCTCGCGAGCTCGATCGAACCGACGACGTCGTATGATCGTAACGTGTAAATGCTGCACTAGGCAGCAGGGATAGATGCTGCTGCTGCTGCTTTGATTTGTTACTATTTTGTTTGACGCTTTAATGGGAGTTGTTTTAAAATTGTTTTAAAATTTTCGCATGTAAAAAATCGCTTTTTTTTTGGCAGTAAAAAAAAA] [+] EMBL AK069777 [ACTTCCATCTCCTATCTTCTTCCCTTCCAAAACCCCCATCTCATCCCACTCCGGCGTCTCCTCCGCCGACGTCGCCATGGGGCAAGCCTGGGCGTCTCTCCAGGATAAACTCCAAGGGAGGCAATGGAAGGAGAAGCAGGTGAGGAAGATCACGGACAAGGTGTTCGACCGCCTCACCGAGGACACCAAGAAGCGCGAGCAGGAGGCCCTCACCTTCGAGGAGGTCTACATCGCCGTCCTCTGCGTCTACAACGACATCAACAAGTAC TTACCAGGGCCGCACTATGATCCGCCCTCCAAGGAGAAGCTCAAGGCCATGATGAATGAGTACGACATCAACCTGGACGGGCTCCTGGACCGGGAGGAGTTCGCGGAGTTCATCCGGAAGCTGACGGCGGAGTCGCTGTGCGCGATC AGCTTCAAGCTGCTGGTGACG CTGGTGGCGGC GCCGGCGCTGGCGCTGGCGACCAAGAGGGCGACGGAGGGCGTGCCCGGCGTCGGCAGGGTGGTGCGCAAGGTGCCCAACTCCATCTACGCCTCCGTCATCACCCTCGGCGTCGTCATGGCCCAGAAATCCA CCGAGGGCGTCGAGTAGACGGCCATCCGATTCGAGCCTGCGAGATTCAGAGCTCGCGAGCTCGATCGAACCGACGACGTCGTATGATCGTAACGTGTAAATGCTGCACTAGGCAGCAGGGATAGATGCTGCTGCTGCTGCTTTGATTTGTTACTATTTTGTTTGACGCTTTAATGGGAGTTGTTTTAAAATTGTTTTA ] [+] EMBL C96663 [ CCTATCTTCTTCCCTTCCAAAACCCCCATCTCATCCCACTCCGGCGTCTCCTCCGCCGACGTCGCCATGGGGCAAGCCTGGGCGTCTCTCCAGGATAAACTCCAAGGGAGGCAATGGAAGGAGAAGCAGGTGAGGAAGATCACGGACAAGGTGTTCGACCGCCTCACCGAGGACACCAAGAAGCGCGAGCAGGAGGCCCTCACCTTCGAGGAGGTCTACATCGCCGTCCTCTGCGTCTACAACGACATCAACAAGTAC TTACCAGGGCCGCACTATGATCCGCCCTCCAAGGAGAAGCTCAAGGCCATGATGAATGAGTACGACATCAACCTGGACGGGCTCCTGGACCGGGAGGAGTTCGCGGAGTTCATCCGGAAGCTGACGGCGGAGTCGCTGTGCGCGAT ] [+] EMBL CB670651 [ CACTCCGCCGTCTCCTCCGCCGACGTCGCCATGGGGCAAGCCTGGGCGTCTCTCCAGGATAAACTCCAAGGGAGGCAATGGAAGGAGAAGCAGGTGAGGAAGATCACGGACAAGGTGTTCGACCGCCTCACCGAGGACACCAAGAAGCGCGAGCAGGAGGCCCTCACCTTCGAGGAGGTCTACATCGCCGTCCTCTGCGTCTACAACGACATCAACAAGTAC TTACCAGGGCCGCACTATGATCCGCCCTCCAAGGAGAAGCTCAAGGCCATGATGAATGAGTACGACATCAACCTGGACGGGCTCCTGGACCGGGAGGAGTTCGCGGAGTTCATCCGGAAGCTGACGGCGGAGTCGCTGTGCGCGATC AGCTTCAAGCTGCTGGTGACG CTGGTGGCGGC GCCGGCGCTGGCGCTGGCGACCAAGAGGGCGACGGAGGGCGTGCCCGGCGTCGGCAGGGTGGTGCGCAAGGTGCCCAACTCCATCTACGCCTCCGTCATCACCCTCGGCGTCGTCATGGCCCAGAAATCCA CCGAGGGCGTCGAGTAGACGGCCATCCGATTCGAGCCTGCGAGATTCAGAGCTCGCGAGCTCGATCGAACCGACGACGTCGTATGATCGTAACGTGTAAATGCTGCACTAGGCAGCAGGGATAGATGCTGCTGCTGCTGCTTTGATTTGTTACTATTTTGTTTGACGCTTTAATGG ] [-] EMBL CB670652 [ ACTCCGGCGTCTCCTCCGCGGACGTCGCCATGGGGCAAGCCTGGGCGTCTCTCCAGGATAAACTCCAAGGGAGGCAATGGAAGGAGAAGCAGGTGAGGAAGATCACGGACAAGGTGTTCGACCGCCTCACCGAGGACACCAAGAAGCGCGAGCAGGAGGCCCTCACCTTCGAGGAGGTGTACATCGCCGTCCTCTGCGTCTACAACGACATCAACAAGTAC TTACCAGGGCCGCACTATGATCCGCCCTCCAAGGAGAAGCTCAAGGCCATGATGAATGAGTACGACATCAACCTGGACGGGCTCCTGGACCGGGAGGAGTTCGCGGAGTTCATCCGGAAGCTGACGGCGGAGTCGCTGTGCGCGATC AGCTTCAAGCTGCTGGTGACG CTGGTGGCGGC GCCGGCGCTGGCGCTGGCGACCAAGAGGGCGACGGAGGGCGTGCCCGGCGTCGGCAGGGTGGTGCGCAAGGTGCCCAACTCCATCTACGCCTCCGTCATCACCCTCGGCGTCGTCATGGCCCAGAAATCCA CCGAGGGCGTCGAGTAGACGGCCATCCGATTCGAGCCTGCGAGATTCAGAGCTCGCGAGCTCGATCGAACCGACGACGTCGTATGATCGTAACGTGTAAATGCTGCACTAGGCAGCAGGGATAGATGCTGCTGCTGCTGCTTTGATTTGTTACTATTTTGTTTGCCGCTTTAAGGGGAGTTGTTTTAAAATTGTTTTAAAATTTTCG ] [+] EMBL C72202 [ CTCCGGCGTCTCCTCCGCCGACGTCGCCATGGGGCAAGCCTGGGCGTCTCTCCAGGATAAACTCCAAGGGAGGCAATGGAAGGAGAAGCAGGTGAGGAAGATCACGGACAAGGTGTTCGACCGCCTCACCGAGGACACCAAGAAGCGCGAG AGGAGGCCCTCACCTTCGAGGAGGTCTACATCGCCGTCCTCTGCGTCTACAACGACATCAACAAGTACTTTACCAGGGCCGCACTATGATCCGCCCTCCAAGGAGAAGTTCAAGG CATGATGAATGAGTACGACATCAACCTGGACGGGTTCCTGGACCGGGAGGAGTTCGCGGAGTTCATCCGGAAGTTNACGGC GAGTCGTTGTTCGCGATCAAGTTTCAAGTTGNTTGTTACGTTTGTTGGCGGC GCC GCGTTTGCGTTTGCGACCAAGA GGCGACGGAGGGCGTt ] [+] EMBL BI799231 [ AGGAGAAGCTCAAGCCCATGATGAATGAGTACGACATCAACCTGGACGGGCTCCTGGACCGGGAGGAGTTC CGGAGTTCATCCGGAAGCTGACGGCGGAGTCGCTGTGCGCGATC AGCTTCAAGCTGCTGGTGACG CTGGT GCGGCAGCCGGCGCTGGCGCTGGCGACCAAGAGGGCGACGGAGGGCGTGCCCGGCGTCGGCAGGGTGGTGCGCAAGGTGCCCAACTCCATCTACGCCTCCGTCATCACCCTCGGCGTCGTCATGGCCCAGAAATCCACCCGAGGGCGTCGAGTAGACGGCCATCCGATCCGAGCCTGCAAGATTCAGAGCTCGCGAGCTCGATCGAACCGACGACGTCGTATGATCGTAACGTGTAAATGCTGCACTAGGCAGCAGGGATAGA TGCTGCTGCTGCTTTGATTTGTTACTATTTTGTTTGACGCTGTAATGGGAGTTGTTTTAAAATTGTTTTAAAATTTTCGCATGTAAAAAA ] [+] EMBL AU172464 [ GACGGCGGAGTCGCTGTGCGCGATC AGCTTCAAGCTGCTGGTGACG CTGGTGGCGGC GCCGGCGCTGGCGCTGGCGACCAAGAGGGCGACGGAGGGCGTGCCCGGCGTCGGCAGGGTGGTGCGCAAGGTGCCCAACTCCATNTACGCCTCCGTCATCACCCTCGGCGTCGTCATGGCCCAGAAATCCA CCGAGGGCGTCGAGTAGACGGCCATCCGATTCGAGCCTGCGAGATTCAGAGCTCGCGAGCTCGATCGAACCGACGACGTCGTATGATCGTAACGTGTAAATGCTGCACTAGGCAGCAGGGATAGATGCTGCTGCTGCTGCTTTGATTTGTTACTATTTTGTTTGACGCTTTAATGGGAGTTGTTTTAAAATTGTTTTAAAATTTTCGCATGTAATCTCTCGCTTTTTTTTTGGCAGTAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||