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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2072 fasta sequence
[GATTCAGACATTCAGAGAGAGAGGAGAGGGAGGAGAGATGGGAGGCGATCATGGGAAGCTCATGAAGAGCTTGAAGGGTGCAGCTCAGAAGTATCTCGGCGTCGGCTTCTTGCTCGGCTTCTTCCTTGTTCTCCTCACATACTTCACCGTCTCCGAGCAGTTCGCGATCGCTGCACCCAACGCAATTCGGAAAACATCACCGGGACACGCCTCCCCGACGATCCCCCCGCCTGTGGAAGAGAAGAGGCCACAGCTGCCCCCTATCATAGAGCAGCGGCAAGCACCAAAGGCAGAGCATGAGCATGCAGCGGTGGTACAGGAGAAGACCCCGTCAGCTGAAGAGATAGAGATACAGAAAGAAACAGAAGAGGACCACACCAAGGAGAAGCCCACTGATGACGTCACCACCACGGTGGAGGAGAGCGCGCCGGCGAAGAAGCCGGCGTGCGACATCCAGGGGCCATGGGCGTCCGACGTGTGCAGCATCGACGGCGACGTGCGCATCCACGGCGCGGCGCACGACGTCGTGATCCCGCCGCCGATCGAGGGCGGCGGCAGCAACCCGAACCCGCGGGAGTGGCGCGTCGTGCCCTACTCGCGGAAGCACATGGGCGGGCTCAAGGAGGTGGCGGTGCGGGAGGTGGCGTCGGCGGCGGAGGCGCCGGCGTGCGACGTGCGGTCGCCGGTGCCGGCGCTGGTGTTCGCCATGGGCGGGCTGACGGGCAACTACTGGCACGACTTCTCCGACGTGCTCATCCCGCTGTACCTGCAGGCGCGGCGGTTCGACGGCGAGGTGCAGCTCGTTGTGGAGAACATCCAGATGTGGTACGTGGGCAAGTACAAGCGCGTCCTGGACCGGCTGTCGCGCCACGACATCGTCGACATGGACAGGGACGACAAGGTCCGGTGCTTCCCCGGCGCGGTGGTCGGCATCCGGATGCACAAGGAGTTCAGCATCGACCCGGCGCGGGATCCCACGGGCCACTCCATGCCGGAGTTCACCAAGTTCCTCCGCGACACCTTCTCGCTGCCGCGCGACGCGCCGGTGAGCCTCGTCGACAATGCCGCGGCGGTGAGGCCGCGGTTGATGATCATCTCGCGGCGGCACCCGCGGAAGCTGATGAACGTGGAGGAGGTGGTGCGGGCGGCGGAGCGGATCGGGTTCGAGGTGGTGATCGGCGACCCGCCGTTCAACGTGGACGTCGGCGAGTTCGCCAAGGAGGTGAACCGCGCGGACGTGCTGATGGGCGTCCATGGCGCGGGGCTGACGAACTCGGTGTTCCTGCCGACGGGGGCGGTGCTGATCCAGGTGGTGCCGTACGGGAAGATGGAGCACATCGGGAAGGTGGACTTCGGCGATCCGGCGGAGGACATGAGGCTCAAGTACATGGCGTACTCCGCCGGCGTGGAGGAGAGCACGCTGGTGGAGACGCTGGGGCGCGACCACCCGGCGGTGCGCGACCCGGAGTCGGTCCACCGGAGCGGGTGGGGGAAGGTCGCCGAGTACTACCTCGGCAAGCAGGACATCCGCCTCGATCTCGCCCGCTTCGAGCCCCTCCTCCGCGACGCCATGGATTACCTCAAACACCAGTAGAGGCGAGCTCCATCCACAAAGACTACTGTAATTAGCTACTAGCTGCAACATTTTTTTTTTTTTTGAATGCCTAGCTGCAACATTTTCATTTTCGTTCTCTATGCTTTTTTTTTTTTGCTTTCTATTCTTTCGAGTTCTTTCACAGAAAAAAGAAATCGATCGATTATTTGATCAGGATTACAGTTACATTATACTACTTCTCTTTGTATTCCCTTTGATGCACATAATGGAGGATGGAATGGAACGAAATCGATTCATTATTAGCACTGAATTGTGTTCGCATTTGGTGATCTCTAGTTTCAACTCGATCAAATAAGTGTTCATTTTTTTTTTAAAAAAAGTACAATTAGAATACCCAACAACTACTAGAAATTGTACAAGTACATTGTGTAGCACATATGCACATGTCGTTGTTAGAGATGACAGATTTGCATTGAGTGTGTTGTTGTTGTAAACAAGTAGCAGAGGTTGGTAGAGT]
[+] EMBL AK070385 [GATTCAGACATTCAGAGAGAGAGGAGAGGGAGGAGAGATGGGAGGCGATCATGGGAAGCTCATGAAGAGCTTGAAGGGTGCAGCTCAGAAGTATCTCGGCGTCGGCTTCTTGCTCGGCTTCTTCCTTGTTCTCCTCACATACTTCACCGTCTCCGAGCAGTTCGCGATCGCTGCACCCAACGCAATTCGGAAAACATCACCGGGACACGCCTCCCCGACGATCCCCCCGCCTGTGGAAGAGAAGAGGCCACAGCTGCCCCCTATCATAGAGCAGCGGCAAGCACCAAAGGCAGAGCATGAGCATGCAGCGGTGGTACAGGAGAAGACCCCGTCAGCTGAAGAGATAGAGATACAGAAAGAAACAGAAGAGGACCACACCAAGGAGAAGCCCACTGATGACGTCACCACCACGGTGGAGGAGAGCGCGCCGGCGAAGAAGCCGGCGTGCGACATCCAGGGGCCATGGGCGTCCGACGTGTGCAGCATCGACGGCGACGTGCGCATCCACGGCGCGGCGCACGACGTCGTGATCCCGCCGCCGATCGAGGGCGGCGGCAGCAACCCGAACCCGCGGGAGTGGCGCGTCGTGCCCTACTCGCGGAAGCACATGGGCGGGCTCAAGGAGGTGGCGGTGCGGGAGGTGGCGTCGGCGGCGGAGGCGCCGGCGTGCGACGTGCGGTCGCCGGTGCCGGCGCTGGTGTTCGCCATGGGCGGGCTGACGGGCAACTACTGGCACGACTTCTCCGACGTGCTCATCCCGCTGTACCTGCAGGCGCGGCGGTTCGACGGCGAGGTGCAGCTCGTTGTGGAGAACATCCAGATGTGGTACGTGGGCAAGTACAAGCGCGTCCTGGACCGGCTGTCGCGCCACGACATCGTCGACATGGACAGGGACGACAAGGTCCGGTGCTTCCCCGGCGCGGTGGTCGGCATCCGGATGCACAAGGAGTTCAGCATCGACCCGGCGCGGGATCCCACGGGCCACTCCATGCCGGAGTTCACCAAGTTCCTCCGCGACACCTTCTCGCTGCCGCGCGACGCGCCGGTGAGCCTCGTCGACAATGCCGCGGCGGTGAGGCCGCGGTTGATGATCATCTCGCGGCGGCACCCGCGGAAGCTGATGAACGTGGAGGAGGTGGTGCGGGCGGCGGAGCGGATCGGGTTCGAGGTGGTGATCGGCGACCCGCCGTTCAACGTGGACGTCGGCGAGTTCGCCAAGGAGGTGAACCGCGCGGACGTGCTGATGGGCGTCCATGGCGCGGGGCTGACGAACTCGGTGTTCCTGCCGACGGGGGCGGTGCTGATCCAGGTGGTGCCGTACGGGAAGATGGAGCACATCGGGAAGGTGGACTTCGGCGATCCGGCGGAGGACATGAGGCTCAAGTACATGGCGTACTCCGCCGGCGTGGAGGAGAGCACGCTGGTGGAGACGCTGGGGCGCGACCACCCGGCGGTGCGCGACCCGGAGTCGGTCCACCGGAGCGGGTGGGGGAAGGTCGCCGAGTACTACCTCGGCAAGCAGGACATCCGCCTCGATCTCGCCCGCTTCGAGCCCCTCCTCCGCGACGCCATGGATTACCTCAAACACCAGTAGAGGCGAGCTCCATCCACAAAGACTACTGTAATTAGCTACTAGCTGCAACATTTTTTTTTTTTTTGAATGCCTAGCTGCAACATTTTCATTTTCGTTCTCTATGCTTTTTTTTTTTTGCTTTCTATTCTTTCGAGTTCTTTCACAGAAAAAAGAAATCGATCGATTATTTGATCAGGATTACAGTTACATTATACTACTTCTCTTTGTATTCCCTTTGATGCACATAATGGAGGATGGAATGGAACGAAATCGATTCATTATTAGCACTGAATTGTGTTCGCATTTGGTGATCTCTAGTTTCAACTCGATCAAATAAGTGTTCATTTTTTTTTTAAAAAAAGTACAATTAGAATACCCAACAACTACTAGAAATTGTACAAGTACATTGTGTAGCACATATGCACATGTCGTTGTTAGAGATGACAGATTTGCATTGAGTGTGTTGTTGTTGTAAACAAGTAGCAGAGGTTGGTAGAGT]
consensusID : consensus_10020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1847 fasta sequence
[TTTTTGCATAGTTTTCTTCATGCTCCATGTAAACAAGCAAGAAAAGAGAGGAAAAGGAGGCAGCTCGGTGCAATTCTCGAACGACCCAAAACCTTGAACAATTCAATCCTTCTTCAGAGAGATTCAGAGTTGGGTTCAGAATATATATACACTAGCACGAGTGAATAGTAGAGGAGACAGAGATAGATAGAGAGGAGAGATGGGCAGCGAGGTGAAGCCGGCGAAGCTTGGCCTCCGGCGACACCTCAACGCCGGCTTCTTCGCCGGCTTCCTCCTCGTCCTCCTCACCTACGTCATCGTCTCGCAGCAGTTCGCCATGGAAACTCCCACAGCTGTCACTAGCAGGGCGCCGAGGATTGACGAGAATGAGTCGGTGACCAAGGCTCGCGTTGAAACAGAGAAGAAGAGGGAGCAGGAGTGGCAGCGGCCAAAGGACACGTCTGGTGCCGTCTCAGCAGAAGAGTTCTCCAAAAGAGACTCGACAAATGCCAAACCGATTGAGAACGGCAAGGTAGTGTGCGGCTCGAACGGGTTCTACTCCGACACCTGCGACGTCGACGGCGACGTCCGGATCAACGGCACGGCTCTCTCCGTGACCCTTGTTCCGGCGAGCCGCCGGTCGGAGCGCCGCCGCGAGTGGAAGATCCAGCCGTACCCGCGCAGGACCGTGTCCGGCATCGCGGAGGTGACCGTGACGCGGCAGCAGGACCGGGCCGCCGCGCCGGCGTGCACGGTGACCCACGGCGTGCCCGGCGTCGTGTTCGCGCTCGGCGGCCTGACCGGCAACTACTGGCACGACTTCAGCGACGTGCTGGTGCCGCTGTTCGTGGCGTCGCGGCGGTACGGCGGCGAGGTCCAGTTCCTGGTCAGCAACATCCAGCCATGGTGGCTGGGCAAGTACGAGGCCGTCGTGCGGCGGCTGTCGCGGTACGACGCCGTCGACCTCGACCGCGACACGGAGGTCCGGTGCTTCCGCCGCGTCGCCGTCGGGCTCCGCATGCACAAGGAGTTCAGCGTGAAGCCGGAGCTGGCGCCGGGCGGGCAGCGGCTGACGATGGCGGACTTCGCCGCGTTCCTCCGCGACACCTACGCGCTCCCCCGCGCCGCGGCGGCGGGCGCGAGGCGGCCGCGGCTGGTGGTGATCCGGCGCGCGCACTACCGGAAGATCGTGAACATGGACGAGGTGGTGCGCGCGGCGGAGGCGGCGGGGTTCGAGGCGGCGGTGATGTCGCCGCGGTTCGACGAGCCGGTGGAGGAGGTGGCGAGGAAGGTGAACGCGTTCGACGCGATGGTGGGCGTGCACGGCGCCGGGCTGACGAACGCGGTGTTCCTGCCGGCGGGGGCGGTGGTGATCCAGGTGGTGCCGTACGGGCGGCTGGAGCGGATGGCGAGGGCGGACTTCGGCGAGCCGGTGGCGGACATGGGGCTCCGGTACATGGAGTACAGCGTCGCCGCCGACGAGAGCACGCTGCTGGAGATGCTGGGGCCGGAGCACCAGGTGGTGAAGGACCCGGAGGCGGTTCACCGGAGCGGCTGGGACAAGGTCGCCGAGTACTACCTCGGCAAGCAGGACGTCCGCATCAACGTCGCCCGCTTCGCCGCCACGCTCGCCGCCGCCTTCGATCACCTTCGACCATCACATAGCTAGTGAGTGAGTGAGTGAGTGACACAGATGTTACAGTTGCTGATAGATATGATACACCACCTCATTGGTCGCAATTTGGTACAGAATGTTCAACCCATCCTTTTTTGTTTTTGTTTTGGCTCAGTATATCCATCATCATTGGTGGAGCGTATGAACATGCACATTGATTGTATTGATTTGGTAGAGTACATGTATGTCACCG]
[+] EMBL OSS0813A [TTTTTGCATAGTTTTCTTCATGCTCCATGTAAACAAGCAAGAAAAGAGAGGAAAAGGAGGCAGCTCGGTGCAATTCTCGAACGACCCAAAACCTTGAACAATTCAATCCTTCTTCAGAGAGATTCAGAGTTGGGTTCAGAATATATATACACTAGCACGAGTGAATAGTAGAGGAGACAGAGATAGATAGAGAGGAGAGATGGGCAGCGAGGTGAAGCCGGCGAAGt ]
[+] EMBL AK105948 [ CTCGAACGACCCAAAACCTTGAACAATTCAATCCTTCTTCAGAGAGATTCAGAGTTGGGTTCAGAATATATATACACTAGCACGAGTGAATAGTAGAGGAGACAGAGATAGATAGAGAGGAGAGATGGGCAGCGAGGTGAAGCCGGCGAAGCTTGGCCTCCGGCGACACCTCAACGCCGGCTTCTTCGCCGGCTTCCTCCTCGTCCTCCTCACCTACGTCATCGTCTCGCAGCAGTTCGCCATGGAAACTCCCACAGCTGTCACTAGCAGGGCGCCGAGGATTGACGAGAATGAGTCGGTGACCAAGGCTCGCGTTGAAACAGAGAAGAAGAGGGAGCAGGAGTGGCAGCGGCCAAAGGACACGTCTGGTGCCGTCTCAGCAGAAGAGTTCTCCAAAAGAGACTCGACAAATGCCAAACCGATTGAGAACGGCAAGGTAGTGTGCGGCTCGAACGGGTTCTACTCCGACACCTGCGACGTCGACGGCGACGTCCGGATCAACGGCACGGCTCTCTCCGTGACCCTTGTTCCGGCGAGCCGCCGGTCGGAGCGCCGCCGCGAGTGGAAGATCCAGCCGTACCCGCGCAGGACCGTGTCCGGCATCGCGGAGGTGACCGTGACGCGGCAGCAGGACCGGGCCGCCGCGCCGGCGTGCACGGTGACCCACGGCGTGCCCGGCGTCGTGTTCGCGCTCGGCGGCCTGACCGGCAACTACTGGCACGACTTCAGCGACGTGCTGGTGCCGCTGTTCGTGGCGTCGCGGCGGTACGGCGGCGAGGTCCAGTTCCTGGTCAGCAACATCCAGCCATGGTGGCTGGGCAAGTACGAGGCCGTCGTGCGGCGGCTGTCGCGGTACGACGCCGTCGACCTCGACCGCGACACGGAGGTCCGGTGCTTCCGCCGCGTCGCCGTCGGGCTCCGCATGCACAAGGAGTTCAGCGTGAAGCCGGAGCTGGCGCCGGGCGGGCAGCGGCTGACGATGGCGGACTTCGCCGCGTTCCTCCGCGACACCTACGCGCTCCCCCGCGCCGCGGCGGCGGGCGCGAGGCGGCCGCGGCTGGTGGTGATCCGGCGCGCGCACTACCGGAAGATCGTGAACATGGACGAGGTGGTGCGCGCGGCGGAGGCGGCGGGGTTCGAGGCGGCGGTGATGTCGCCGCGGTTCGACGAGCCGGTGGAGGAGGTGGCGAGGAAGGTGAACGCGTTCGACGCGATGGTGGGCGTGCACGGCGCCGGGCTGACGAACGCGGTGTTCCTGCCGGCGGGGGCGGTGGTGATCCAGGTGGTGCCGTACGGGCGGCTGGAGCGGATGGCGAGGGCGGACTTCGGCGAGCCGGTGGCGGACATGGGGCTCCGGTACATGGAGTACAGCGTCGCCGCCGACGAGAGCACGCTGCTGGAGATGCTGGGGCCGGAGCACCAGGTGGTGAAGGACCCGGAGGCGGTTCACCGGAGCGGCTGGGACAAGGTCGCCGAGTACTACCTCGGCAAGCAGGACGTCCGCATCAACGTCGCCCGCTTCGCCGCCACGCTCGCCGCCGCCTTCGATCACCTTCGACCATCACATAGCTAGTGAGTGAGTGAGTGAGTGACACAGATGTTACAGTTGCTGATAGATATGATACACCACCTCATTGGTCGCAATTTGGTACAGAATGTTCAACCCATCCTTTTTTGTTTTTGTTTTGGCTCAGTATATCCATCATCATTGGTGGAGCGTATGAACATGCACATTGATTGTATTGATTTGGTAGAGTACATGTATGTCACCG]
[+] EMBL AK071050 [ CAGAGATAGATAGAGAGGAGAGATGGGCAGCGAGGTGAAGCCGGCGAAGCTTGGCCTCCGGCGACACCTCAACGCCGGCTTCTTCGCCGGCTTCCTCCTCGTCCTCCTCACCTACGTCATCGTCTCGCAGCAGTTCGCCATGGAAACTCCCACAGCTGTCACTAGCAGGGCGCCGAGGATTGACGAGAATGAGTCGGTGACCAAGGCTCGCGTTGAAACAGAGAAGAAGAGGGAGCAGGAGTGGCAGCGGCCAAAGGACACGTCTGGTGCCGTCTCAGCAGAAGAGTTCTCCAAAAGAGACTCGACAAATGCCAAACCGATTGAGAACGGCAAGGTAGTGTGCGGCTCGAACGGGTTCTACTCCGACACCTGCGACGTCGACGGCGACGTCCGGATCAACGGCACGGCTCTCTCCGTGACCCTTGTTCCGGCGAGCCGCCGGTCGGAGCGCCGCCGCGAGTGGAAGATCCAGCCGTACCCGCGCAGGACCGTGTCCGGCATCGCGGAGGTGACCGTGACGCGGCAGCAGGACCGGGCCGCCGCGCCGGCGTGCACGGTGACCCACGGCGTGCCCGGCGTCGTGTTCGCGCTCGGCGGCCTGACCGGCAACTACTGGCACGACTTCAGCGACGTGCTGGTGCCGCTGTTCGTGGCGTCGCGGCGGTACGGCGGCGAGGTCCAGTTCCTGGTCAGCAACATCCAGCCATGGTGGCTGGGCAAGTACGAGGCCGTCGTGCGGCGGCTGTCGCGGTACGACGCCGTCGACCTCGACCGCGACACGGAGGTCCGGTGCTTCCGCCGCGTCGCCGTCGGGCTCCGCATGCACAAGGAGTTCAGCGTGAAGCCGGAGCTGGCGCCGGGCGGGCAGCGGCTGACGATGGCGGACTTCGCCGCGTTCCTCCGCGACACCTACGCGCTCCCCCGC CCGCGGCGGCGGGCGCGAGGCGGCCGCGGCTGGTGGTGATCTGGCGCGCGCACTACCGGAAGATCGTGAACATGGACGAGGTGGTGCGCGCGGCGGAGGCGGCGGGGTTCGAGGCGGCGGTGATGTCGCCGCGGTTCGACGAGCCGGTGGAGGAGGTGGCGAGGAAGGTGAACGCGTTCGACGCGATGGTGGGCGTGCACGGCGCCGGGCTGACGAACGCGGTGTTCCTGCCGGCGGGGGCGGTGGTGATCCAGGTGGTGCCGTACGGGCGGCTGGAGCGGATGGCGAGGGCGGACTTCGGCGAGCCGGTGGCGGACATGGGGCTCCGGTACATGGAGTACAGCGTCGCCGCCGACGAGAGCACGCTGCTGGAGATGCTGGGGCCGGAGCACCAGGTGGTGAAGGACCCGGAGGCGGTTCACCGGAGCGGCTGGGACAAGGTCGCCGAGTACTACCTCGGCAAGCAGGACGTCCGCATCAACGTCGCCCGCTTCGCCGCCACGCTCGCCGCCGCCTTCGATCACCTTCGACCATCACATAGCTAGTGAGTGAGTGAGTGAGTGACACAGATGTTACAGTTGCTGATAGATATGATACACCACCTCATTGGTCGCAATTTGGTACAGAATGTTCAACCCATCCTTTTTTGTTTTTGTTTTGGCTCAGTATATCCATCATCATTGGTGGAGCGTATGAACATGCACATTGATTGTATTGATTTGGTAGAGTACATGTATGTCACCG]
consensusID : consensus_10020#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence
[CGCCGGCGTGCACGGTGACCCACGGCGTGCCCGGCGTCGTGTTCGCGCTCGGCGGCCTGACCGGCAACTACTGGCACGACTTCAGCGACGTGCTGGTGCCGCTGTTCGTGGCGTCGCGGCGGTACGGCGGCGAGGTCCAGTTCCTGGTCAGCAACATCCAGCCATGGTGGCTGGGCAAGTACGAGGCCGTCGTGCGGCGGCTGTCGCGGTACGACGCCGTCGACCTCGACCGCGACACGGAGGTCCGGTGCTTCCGCCGCGTCGCCGTCGGGCTCCGCATGCACAAGGAGTTCAGCGTGAAGCCGGAGCTGGCGCCGGGCGGGCAGCGGCTGACGATGGCGGACTTCGCCGCGTTCCTCCGCGACACCTACGCGCTCCCCCGCGCCGCGGCGGCGGGCGCGAGTACCCCCAAGTTATTCCCTTTAGGAGATAAACTCGAGGTGCACTGCC]
[-] EMBL CB965039 [CGCCGGCGTGCACGGTGACCCACGGCGTGCCCGGCGTCGTGTTCGCGCTCGGCGGCCTGACCGGCAACTACTGGCACGACTTCAGCGACGTGCTGGTGCCGCTGTTCGTGGCGTCGCGGCGGTACGGCGGCGAGGTCCAGTTCCTGGTCAGCAACATCCAGCCATGGTGGCTGGGCAAGTACGAGGCCGTCGTGCGGCGGCTGTCGCGGTACGACGCCGTCGACCTCGACCGCGACACGGAGGTCCGGTGCTTCCGCCGCGTCGCCGTCGGGCTCCGCATGCACAAGGAGTTCAGCGTGAAGCCGGAGCTGGCGCCGGGCGGGCAGCGGCTGACGATGGCGGACTTCGCCGCGTTCCTCCGCGACACCTACGCGCTCCCCCGCGCCGCGGCGGCGGGCGCGAGTACCCCCAAGTTATTCCCTTTAGGAGATAAACTCGAGGTGCACTGCC]
consensusID : consensus_10020#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[GTGCACGGCGCCGGGCTGACGAACGCGGTGTTCCTGCCGGCGGGGGCGGTGGTGATCCAGGTGGTGCCGTACGGGCGGCTGGAGCGGATGGCGAGGGCGGACTTCGGCGAGCCGGTGGCGGACATGGGGCTCCGGTACATGGAGTACAGCGTCGCCGCCGACGAGAGCACGCTGCTGGAGATGCTGGGGCCGGAGCACCAGGTGGTGAAGGACCCGGAGGCGGTTCACCGGAGCGGCTGGGACAAGGTCGCCGAGTACTACCTCGGCAAGCAGGACGTCCGCATCAACGTCGCCCGCTTCGCCGCCACGCTCGCCGCCGCCTTCGATCACCTTCGACCATCACATAGCTAGTGAGTGAGTGAGTGAGTGACACAGATGTTACAGTTGCTGATAGATATGATACACCACCTCACTCACTCACT]
[-] EMBL AU172403 [GTGCACGGCGCCGGGCTGACGAACGCGGTGTTCCTGCCGGCGGGGGCGGTGGTGATCCAGGTGGTGCCGTACGGGCGGCTGGAGCGGATGGCGAGGGCGGACTTCGGCGAGCCGGTGGCGGACATGGGGCTCCGGTACATGGAGTACAGCGTCGCCGCCGACGAGAGCACGCTGCTGGAGATGCTGGGGCCGGAGCACCAGGTGGTGAAGGACCCGGAGGCGGTTCACCGGAGCGGCTGGGACAAGGTCGCCGAGTACTACCTCGGCAAGCAGGACGTCCGCATCAACGTCGCCCGCTTCGCCGCCACGCTCGCCGCCGCCTTCGATCACCTTCGACCATCACATAGCTAGTGAGTGAGTGAGTGAGTGACACAGATGTTACAGTTGCTGATAGATATGATACACCACCTCACTCACTCACT]
consensusID : consensus_10020#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence
[TGAGTGAGTGAGGTGGTGTATCATATCTATCAGCAACTGTAACATCTGTGTCACTCACTCACNCACTCACTAGCTATGTGNTGGTCGANGGTNATCGANGGCGGCGGCGAGCGTGGCGTCGAANGGANAGACGTTNATGCGGACGTCCTGCTTNCCGAGGTAGTACTCGGCGACCTTGTCCCAGNCGCTCCGG]
[+] EMBL C29083 [TGAGTGAGTGAGGTGGTGTATCATATCTATCAGCAACTGTAACATCTGTGTCACTCACTCACNCACTCACTAGCTATGTGNTGGTCGANGGTNATCGANGGCGGCGGCGAGCGTGGCGTCGAANGGANAGACGTTNATGCGGACGTCCTGCTTNCCGAGGTAGTACTCGGCGACCTTGTCCCAGNCGCTCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 TTTTTGCATAGTTTTCTTCATGCTCCATGTAAACAAGCAAGAAAAGAGAGGAAAAGGAGG 60
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 CAGCTCGGTGCAATTCTCGAACGACCCAAAACCTTGAACAATTCAATCCTTCTTCAGAGA 120
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GATTCAGAGTTGGGTTCAGAATATATATACACTAGCACGAGTGAATAGTAGAGGAGACAG 180
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 AGATAGATAGAGAGGAGAGATGGGCAGCGAGGTGAAGCCGGCGAAGCTTGGCCTCCGGCG 240
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ACACCTCAACGCCGGCTTCTTCGCCGGCTTCCTCCTCGTCCTCCTCACCTACGTCATCGT 300
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 CTCGCAGCAGTTCGCCATGGAAACTCCCACAGCTGTCACTAGCAGGGCGCCGAGGATTGA 360
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 CGAGAATGAGTCGGTGACCAAGGCTCGCGTTGAAACAGAGAAGAAGAGGGAGCAGGAGTG 420
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GCAGCGGCCAAAGGACACGTCTGGTGCCGTCTCAGCAGAAGAGTTCTCCAAAAGAGACTC 480
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GACAAATGCCAAACCGATTGAGAACGGCAAGGTAGTGTGCGGCTCGAACGGGTTCTACTC 540
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ------------------------------------------------------------
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 CGACACCTGCGACGTCGACGGCGACGTCCGGATCAACGGCACGGCTCTCTCCGTGACCCT 600
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 -------------------------------GATTCAGACATTCAGAGAGAGAGGAGAGG 29
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 TGTTCCGGCGAGCCGCCGGTCGGAGCGCCGCCGCGAGTGGAAGATCCAGCCGTACCCGCG 660
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GAGGAGAGATGGGAGGCGATCATGGGAAGCTCATGAAGAGCTTGAAGGGTGCAGCTCAGA 89
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 CAGGACCGTGTCCGGCATCGCGGAGGTGACCGTGACGCGGCAGCAGGACCGGGCCGCCGC 720
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 AGTATCTCGGCGTCGGCTTCTTGCTCGGCTTCTTCCTTGTTCTCCTCACATACTTCACCG 149
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GCCGGCGTGCACGGTGACCCACGGCGTGCCCGGCGTCGTGTTCGCGCTCGGCGGCCTGAC 780
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 TCTCCGAGCAGTTCGCGATCGCTGCACCCAACGCAATTCGGAAAACATCACCGGGACACG 209
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 CGGCAACTACTGGCACGACTTCAGCGACGTGCTGGTGCCGCTGTTCGTGGCGTCGCGGCG 840
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CCTCCCCGACGATCCCCCCGCCTGTGGAAGAGAAGAGGCCACAGCTGCCCCCTATCATAG 269
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GTACGGCGGCGAGGTCCAGTTCCTGGTCAGCAACATCCAGCCATGGTGGCTGGGCAAGTA 900
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 AGCAGCGGCAAGCACCAAAGGCAGAGCATGAGCATGCAGCGGTGGTACAGGAGAAGACCC 329
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 CGAGGCCGTCGTGCGGCGGCTGTCGCGGTACGACGCCGTCGACCTCGACCGCGACACGGA 960
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CGTCAGCTGAAGAGATAGAGATACAGAAAGAAACAGAAGAGGACCACACCAAGGAGAAGC 389
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GGTCCGGTGCTTCCGCCGCGTCGCCGTCGGGCTCCGCATGCACAAGGAGTTCAGCGTGAA 1020
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CCACTGATGACGTCACCACCACGGTGGAGGAGAGCGCGCCGGCGAAGAAGCCGGCGTGCG 449
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GCCGGAGCTGGCGCCGGGCGGGCAGCGGCTGACGATGGCGGACTTCGCCGCGTTCCTCCG 1080
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ACATCCAGGGGCCATGGGCGTCCGACGTGTGCAGCATCGACGGCGACGTGCGCATCCACG 509
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 CGACACCTACGCGCTCCCCCGCGCCGCGGCGGCGGGCGCGAGGCGGCCGCGGCTGGTGGT 1140
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GCGCGGCGCACGACGTCGTGATCCCGCCGCCGATCGAGGGCGGCGGCAGCAACCCGAACC 569
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GATCCGGCGCGCGCACTACCGGAAGATCGTGAACATGGACGAGGTGGTGCGCGCGGCGGA 1200
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CGCGGGAGTGGCGCGTCGTGCCCTACTCGCGGAAGCACATGGGCGGGCTCAAGGAGGTGG 629
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 GGCGGCGGGGTTCGAGGCGGCGGTGATGTCGCCGCGGTTCGACGAGCCGGTGGAGGAGGT 1260
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CGGTGCGGGAGGTGGCGTCGGCGGCGGAGGCGCCGGCGTGCGACGTG-CGGTCGCCGGTG 688
consensus_10020#2 ------------------------------CGCCGGCGTGCACGGTGACCCACGGCGTGC 30
consensus_10020#1 GGCGAGGAAGGTGAACGCGTTCGACGCGATGGTGGGCGTGCACGGCG----CCGGGCTGA 1316
consensus_10020#3 -------------------------------------GTGCACGGCG----CCGGGCTGA 19
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CCGGCGCTGGTGTTCGCCATGGGCGGGCTGACGGGCAACTACTGGCACGACTTCTCCGAC 748
consensus_10020#2 CCGGCG-TCGTGTTCGCGCTCGGCGGCCTGACCGGCAACTACTGGCACGACTTCAGCGAC 89
consensus_10020#1 CGAACG-CGGTGTTCCTGCCGGCGGGGGCGGTGGTGATCCA--GGTGGTGCCGTACGGGC 1373
consensus_10020#3 CGAACG-CGGTGTTCCTGCCGGCGGGGGCGGTGGTGATCCA--GGTGGTGCCGTACGGGC 76
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GTGCTCATCCCGCTGTACCTGCAGG--CGCGGCGGTTCGACGGCGAGGTGCAGCTCGTTG 806
consensus_10020#2 GTGCTGGTGCCGCTGTTCGTGGCGT--CGCGGCGGTACGGCGGCGAGGTCCAGTTCCTGG 147
consensus_10020#1 G-GCTGGAGCGGATGGCGAGGGCGGACTTCGGCGAGCCGGTGGCGGACATGGGGCTCCGG 1432
consensus_10020#3 G-GCTGGAGCGGATGGCGAGGGCGGACTTCGGCGAGCCGGTGGCGGACATGGGGCTCCGG 135
consensus_10020#4 ---------TGAGTGAGTGAGGTGGTGTATCAT-ATCTATCAGCAACTGTAACATCTGTG 50
** * * ** *
consensus_10020#0 TGGAGAACATCCAGATGTGGTACGTGGGCAA-GTACAAGCGCGTCCTGGACCGGCTGTCG 865
consensus_10020#2 TCAGCAACATCCAGCCATGGTGGCTGGGCAA-GTACGAGGCCGTCGTGCGGCGGCTGTCG 206
consensus_10020#1 TACATGGAGTACAGCGTCGCCGCCGACGAGA-GCACGCTGCTG--GAGATGCTGGGGCCG 1489
consensus_10020#3 TACATGGAGTACAGCGTCGCCGCCGACGAGA-GCACGCTGCTG--GAGATGCTGGGGCCG 192
consensus_10020#4 TCACTCACTCACNCACTCACTAGCTATGTGNTGGTCGANGGTNATCGANGGCGGCGGC-- 108
* * * * * * * *
consensus_10020#0 CGCCACGACATCGTCGACATGGACAGGGACGACAAGGTCCGGTGCTTCCCCGGCGCGGTG 925
consensus_10020#2 CGGTACGACGCCGTCGACCTCGACCGCGACACGGAGGTCCGGTGCTTCCGCCGCGTCGCC 266
consensus_10020#1 GAGCACCAGGTGGTGAA---GGACCCGGAGGCGGTTCACCGGAGCGGCTGGGACAAGGTC 1546
consensus_10020#3 GAGCACCAGGTGGTGAA---GGACCCGGAGGCGGTTCACCGGAGCGGCTGGGACAAGGTC 249
consensus_10020#4 GAGCGTGGCGTCGAANGGANAGACGTTNATGCGGACGTCC--TGCTTNC-CGAGGTAGTA 165
* *** * ** ** *
consensus_10020#0 GTCGGCATCCGGATGCACAAGGAGTTCAGCATCGACCCGGCGCGGGATCCCA-CGGGCCA 984
consensus_10020#2 GTCGGGCTCCGCATGCACAAGGAGTTCAGCGTGAAGCCGGAGCTGGCGCCGGGCGGGCAG 326
consensus_10020#1 GCCGAGTACTACCTCGGCAAG-----CAGGACGTCCGCATCAACGTCGCCCGCTTCGCCG 1601
consensus_10020#3 GCCGAGTACTACCTCGGCAAG-----CAGGACGTCCGCATCAACGTCGCCCGCTTCGCCG 304
consensus_10020#4 CTCGGCGACCTTGTCC-CAGNCGCTCCGG------------------------------- 193
** * * ** * *
consensus_10020#0 CTCC-----ATGCCGGAGTTCACCAAGTTCCTCCGCGACACCTTCTCGCTGCCGCGCGAC 1039
consensus_10020#2 CGGCTGACGATGGCGGACTTCGCCGCGTTCCTCCGCGACACCTACGCGCTCCCCCGCGCC 386
consensus_10020#1 CCAC-------------GCTCGCCGCCGCCTTCGAT--CACCTTCG-ACCATCACATAGC 1645
consensus_10020#3 CCAC-------------GCTCGCCGCCGCCTTCGAT--CACCTTCG-ACCATCACATAGC 348
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GCGCCGGTGAGCCTCGTCGACAATGCCGCGGCGGTGAGGCCGCGGTTGATGATCATCTCG 1099
consensus_10020#2 GCGGCGGCGGGC------GCGAGTACCCCCAAGTTAT--TCCCTTTAGGAGATAAACTCG 438
consensus_10020#1 TAGTGAGTGAGTG----AGTGAGTGACACAGATGTTA-----CAGTTGCTGATAGATATG 1696
consensus_10020#3 TAGTGAGTGAGTG----AGTGAGTGACACAGATGTTA-----CAGTTGCTGATAGATATG 399
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CGGCGGCACCCGCGGAAGCTGATGAACGTGGAGGAGGTGGTGCGGGCGGCGGAGCGGATC 1159
consensus_10020#2 AGGTG-CACTGCC----------------------------------------------- 450
consensus_10020#1 ATACACCACCTCATTGGTCGCAATTTGGTACAGAATGTTCAACCCATCCTTTTTTGTTTT 1756
consensus_10020#3 ATACACCACCTCACTCA-CTCACT------------------------------------ 422
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GGGTTCGAGGTGGTGATCGGCGACCCGCCGTTCAACGTGGACGTCGGCGAGTTCGCCAAG 1219
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 TGTTTTGGCTCAGTATATCCATCATCATTGGTGGAGCGTATGAACATGCACATTGATTGT 1816
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GAGGTGAACCGCGCGGACGTGCTGATGGGCGTCCATGGCGCGGGGCTGACGAACTCGGTG 1279
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ATTGATTTGGTAGAGTACATGTATGTCACCG----------------------------- 1847
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 TTCCTGCCGACGGGGGCGGTGCTGATCCAGGTGGTGCCGTACGGGAAGATGGAGCACATC 1339
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GGGAAGGTGGACTTCGGCGATCCGGCGGAGGACATGAGGCTCAAGTACATGGCGTACTCC 1399
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GCCGGCGTGGAGGAGAGCACGCTGGTGGAGACGCTGGGGCGCGACCACCCGGCGGTGCGC 1459
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GACCCGGAGTCGGTCCACCGGAGCGGGTGGGGGAAGGTCGCCGAGTACTACCTCGGCAAG 1519
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CAGGACATCCGCCTCGATCTCGCCCGCTTCGAGCCCCTCCTCCGCGACGCCATGGATTAC 1579
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CTCAAACACCAGTAGAGGCGAGCTCCATCCACAAAGACTACTGTAATTAGCTACTAGCTG 1639
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 CAACATTTTTTTTTTTTTTGAATGCCTAGCTGCAACATTTTCATTTTCGTTCTCTATGCT 1699
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 TTTTTTTTTTTGCTTTCTATTCTTTCGAGTTCTTTCACAGAAAAAAGAAATCGATCGATT 1759
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ATTTGATCAGGATTACAGTTACATTATACTACTTCTCTTTGTATTCCCTTTGATGCACAT 1819
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 AATGGAGGATGGAATGGAACGAAATCGATTCATTATTAGCACTGAATTGTGTTCGCATTT 1879
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 GGTGATCTCTAGTTTCAACTCGATCAAATAAGTGTTCATTTTTTTTTTAAAAAAAGTACA 1939
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 ATTAGAATACCCAACAACTACTAGAAATTGTACAAGTACATTGTGTAGCACATATGCACA 1999
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 TGTCGTTGTTAGAGATGACAGATTTGCATTGAGTGTGTTGTTGTTGTAAACAAGTAGCAG 2059
consensus_10020#2 ------------------------------------------------------------
consensus_10020#1 ------------------------------------------------------------
consensus_10020#3 ------------------------------------------------------------
consensus_10020#4 ------------------------------------------------------------
consensus_10020#0 AGGTTGGTAGAGT 2072
consensus_10020#2 -------------
consensus_10020#1 -------------
consensus_10020#3 -------------
consensus_10020#4 -------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||