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Oryza sativa
cluster # 10069 cluster # 10069       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10069#0 length = 1890 sequences # 4  
consensus_10069#1 length = 655 sequences # 1  
consensus_10069#2 length = 641 sequences # 1  
consensus_10069#3 length = 482 sequences # 1  

consensusID : consensus_10069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1890
fasta sequence
                              [TCTTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCACGCTTCCGCAAATTTCCGATCTCCTCCTCCTCCTCATCCAGCTCGCTCGCTCGCTCGCGGCGGAGAATCCAGCCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCCAAAACAAATGCAATGA-GTTGTCATACAAGGGGCTTGTTGAAGGAATACAACATATATTTATAGGCGATCACCTATATTTTTCTGACTCATGGGCGACTGGGTTATAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGTACCAACCTTCTGAAATTGGGCCATGATCAGAGAGAGAAGCTTTCGACAACCAACAACAATCAAGGCAATGACAAATTTGTTCAGAAGTCAGTTATGCATTTTCAAACTTGGAGAATAGGCATACTGTTCTTTGCTGCGGGAAACTGCCTCAACTTCATGTCCTTCGCATATGCCGCACAGTCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGTTTACACCCCGGAGCAGCTAGTTGCGAAATACAGCAATTTAGTGTTTGTTCTCTATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAGGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGATCTTGTTCTGTCTTATTTGCAAAATCATTGTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGATGGCGAGATTGAATGAAGGCCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAGTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGATGGTTCTAGTGCCACCCAGGAACCTGCAATTGATGCAAACAGGCCTGGAAAGATGCAGACGGAGGAGACAGAAGTTGATGGTACTAACTCCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCATCGGTGCTTGCGATGCCGATGGTCTCCTCACGAACAA-CAGGGTTCAGAGGAATCGCAACCGACCGATCAAAGTACATTCCTTTGCGGTCGACCGATTGGGACAATCTATAGTTGACGATGATTTGAATTACAGGTATACAAGCCAAATGTCTTACTTGGATGTTGCCAAGCGGATGCCAGTAAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAAACTTCCCTTGAAACACTGTCCATACCCA-GGTTGTTGTATTTCTTCGAAA-CAGGTGCCTACAATA-CTTGTATAAACACGCCACACATGTTAGAACAAACTTCAATGATTCAATTCACTCTTCCCATTGGTNTTCCAAAAAAAAAAA]

[+] EMBL AK103390             [TCTTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCACGCTTCCGCAAATTTCCGATCTCCTCCTCCTCCTCATCCAGCTCGCTCGCTCGCTCGCGGCGGAGAATCCAGCCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCCAAAACAAGTGCAATGA GTTGTCATACAAGGGGCTTGTTGAAGGAATACAACATATATTTATAGGCGATCACCTATATTTTTCTGACTCATGGGCGACTGGGTTATAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGTACCAACCTTCTGAAATTGGGCCATGATCAGAGAGAGAAGCTTTCGACAACCAACAACAATCAAGGCAATGACAAATTTGTTCAGAAGTCAGTTATGCATTTTCAAACTTGGAGAATAGGCATACTGTTCTTTGCTGCGGGAAACTGCCTCAACTTCATGTCCTTCGCATATGCCGCACAGTCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGTTTACACCCCGGAGCAGCTAGTTGCGAAATACAGCAATTTAGTGTTTGTTCTCTATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAGGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGATCTTGTTCTGTCTTATTTGCAAAATCATTGTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGATGGCGAGATTGAATGAAGGCCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAGTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGATGGTTCTAGTGCCACCCAGGAACCTGCAATTGATGCAAACAGGCCTGGAAAGATGCAGACGGAGGAGACAGAAGTTGATGGTACTAACTCCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCATCGGTGCTTGCGATGCCGATGGTCTCCTCACGAACAA CAGGGTTCAGAGGAATCGCAACCGACCGATCAAAGTACATTCCTTTGCGGTCGACCGATTGGGACAATCTATAGTTGACGATGATTTGAATTACAGGTATACAAGCCAAATGTCTTACTTGGATGTTGCCAAGCGGATGCCAGTAAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAAACTTCCCTTGAAACACTGTCCATACCCA GGTTGTTGTATTTCTTCGAAA CAGGTGCCTACAATA CTTGTATAAACACGCCACACATGTTAGAACAAACTTCAATGATTCAATTCACTCTTCCCATTGG                 ]
[+] EMBL AU056673             [      CCTTCCTCCTCCTCCTCCTCCTCCTCCACGCTTCCGCAAATTTCCGATCTCCTCCTCCTCCTCATCCAGCTCGCTCGCTCGCTCGCGGCGGAGAATCCAGCCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCCAAAACAAATGCAATGA GTTGTCATACAAGGGGCTTGTTGAAGGAATACAACATATATTTATAGGCGATCACCTATATTTTTCTGACTCATGGGCGACTGGGTTATAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGTACCAACCTTCTGAAATTGGGCCATGATCAGAGAGAGAAGCTTTCGACAACCAACAACAATCAAGGCAATGACAAATTTGTTCCGAAGTCAGTTATGCATTTTCAAACTTGGAGAATAGGCATACTGTTCTTTGCTGCGGGAAACTGCCTCAACTTCATGTCCTTCGCATATGCCGCACAGTCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAAGTCATGGTAGCAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS10383A            [                                                                                TCGCTCGCTCGCGGCGGAGAATCCAGCCCGAGCAGGCTGGCTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGGCTCCGTATCAACCAAGATATAAGCTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCTTCAAAGTGTTTATTCCAAAACAAATGCAATGAGGTTGTCATACAAGGGGCTTGTTGAAGGAATACAACATATATTTATAGGCGATCACCTATATTTTTCTGACTCATGGGCGACTGGGTTATAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGgta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM038503             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGAGACCATCAGCGCTTCATCGGTGCTTGCGATCCCGATGGTCTCCTCACGAACAACCAGGGTTCAGAGGAATCGCAACCGACCGATCCAAGTACATTCCTTTGCGGTCGACCGATTGGGNCCATCTATAGTTGACGATGATTTGAATTACAGGTATACAAGCCCAATGTCTTACTTGGATGTTGCCCAGCGGATGCCAGTAAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAAACTTCCCTTGAAACCCTGTCCATACCCACGGTTGTTGTATTTCTTCGAAACCCGGTGCCTACCATACCTTGTATAAACACCCCACACNTGTTAGAACCAACTTCAATGATTCNATTCACTCTTCCCCTTGGTNTTCCAAAAAAAAAAA]


>consensus_10069#0 TCTTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCACGCTTCCGCAAATTTCCGATCTCCTC CTCCTCCTCATCCAGCTCGCTCGCTCGCTCGCGGCGGAGAATCCAGCCCGAGCAGGCTGG CTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGGCTCCGTATCAACCAAGATATAAG CTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCT TCAAAGTGTTTATTCCAAAACAAATGCAATGAGTTGTCATACAAGGGGCTTGTTGAAGGA ATACAACATATATTTATAGGCGATCACCTATATTTTTCTGACTCATGGGCGACTGGGTTA TAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGTACCAACCTTCTGA AATTGGGCCATGATCAGAGAGAGAAGCTTTCGACAACCAACAACAATCAAGGCAATGACA AATTTGTTCAGAAGTCAGTTATGCATTTTCAAACTTGGAGAATAGGCATACTGTTCTTTG CTGCGGGAAACTGCCTCAACTTCATGTCCTTCGCATATGCCGCACAGTCACTTCTTGCAG CTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGA CCATTTCAGTGAAAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAG TTTCCTTTGGTAATCATCAATCTCCAGTTTACACCCCGGAGCAGCTAGTTGCGAAATACA GCAATTTAGTGTTTGTTCTCTATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGT ATCTCTACAGGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATT GGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGATCTTGTTCTG TCTTATTTGCAAAATCATTGTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGT TCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGA TGGCGAGATTGAATGAAGGCCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTC AGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAG TATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCA TCTCCTTACTGGCACCCGACGACAGTAAAGATGGTTCTAGTGCCACCCAGGAACCTGCAA TTGATGCAAACAGGCCTGGAAAGATGCAGACGGAGGAGACAGAAGTTGATGGTACTAACT CCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGTCGGCTT GCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCAGCGCTTCATCGGTGCTTGCGATGC CGATGGTCTCCTCACGAACAACAGGGTTCAGAGGAATCGCAACCGACCGATCAAAGTACA TTCCTTTGCGGTCGACCGATTGGGACAATCTATAGTTGACGATGATTTGAATTACAGGTA TACAAGCCAAATGTCTTACTTGGATGTTGCCAAGCGGATGCCAGTAAATTTTTGTTGCTT CCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCG ATAAAACTTCCCTTGAAACACTGTCCATACCCAGGTTGTTGTATTTCTTCGAAACAGGTG CCTACAATACTTGTATAAACACGCCACACATGTTAGAACAAACTTCAATGATTCAATTCA CTCTTCCCATTGGTNTTCCAAAAAAAAAAA



consensusID : consensus_10069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence
                              [TAGTGATGTTTGTATTGGCATNACATCTGTCTTTATAGGCATCTCCTTACTGNCACCCGACGACAGTAAAGTTGACNCCAAAGATGGTTCCTAGTGCCACCCAGGAACCTGCAATTGATGCAAACAGGCCTGGAAAGATGCAGACGGAGGAGCCAGAAGTTGATGGTACTAACTCCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCCAGCGCTTCATCGGTGCTTGCGATGCCGATGGTCTCCTCACGAACAACAGGGTTCAGAGGAATCGCAACCGACCGATCNAAGTACATTCCTTTGCGGTCGACCGATTGGGACAATCTATAGTTGACGATGATTTGAATTACAGGTATACAAGCCAAATGTCTTACTTGGATGTTGCCAAGCGGATGCCAGTAAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAAACTTCCCTTGAAACACTGTCCATACCCAGGTTGTTGTATTTCTTCGAAACAGGTGCCTACAATACTTGTATAAACACGCCACACATGTTAGAACAAACTTCAATGATTCAAAAAA]

[+] EMBL AU056674             [TAGTGATGTTTGTATTGGCATNACATCTGTCTTTATAGGCATCTCCTTACTGNCACCCGACGACAGTAAAGTTGACNCCAAAGATGGTTCCTAGTGCCACCCAGGAACCTGCAATTGATGCAAACAGGCCTGGAAAGATGCAGACGGAGGAGCCAGAAGTTGATGGTACTAACTCCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGTCGGCTTGCTCCATGTCACTTGGCCTTGGGGAGGAGACCATCCAGCGCTTCATCGGTGCTTGCGATGCCGATGGTCTCCTCACGAACAACAGGGTTCAGAGGAATCGCAACCGACCGATCNAAGTACATTCCTTTGCGGTCGACCGATTGGGACAATCTATAGTTGACGATGATTTGAATTACAGGTATACAAGCCAAATGTCTTACTTGGATGTTGCCAAGCGGATGCCAGTAAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAAACTTCCCTTGAAACACTGTCCATACCCAGGTTGTTGTATTTCTTCGAAACAGGTGCCTACAATACTTGTATAAACACGCCACACATGTTAGAACAAACTTCAATGATTCAAAAAA]


>consensus_10069#1 TAGTGATGTTTGTATTGGCATNACATCTGTCTTTATAGGCATCTCCTTACTGNCACCCGA CGACAGTAAAGTTGACNCCAAAGATGGTTCCTAGTGCCACCCAGGAACCTGCAATTGATG CAAACAGGCCTGGAAAGATGCAGACGGAGGAGCCAGAAGTTGATGGTACTAACTCCTTCA CAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCAAGGCAAAGTCGGCTTGCTCCA TGTCACTTGGCCTTGGGGAGGAGACCATCCAGCGCTTCATCGGTGCTTGCGATGCCGATG GTCTCCTCACGAACAACAGGGTTCAGAGGAATCGCAACCGACCGATCNAAGTACATTCCT TTGCGGTCGACCGATTGGGACAATCTATAGTTGACGATGATTTGAATTACAGGTATACAA GCCAAATGTCTTACTTGGATGTTGCCAAGCGGATGCCAGTAAATTTTTGTTGCTTCCGGA AGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAA ACTTCCCTTGAAACACTGTCCATACCCAGGTTGTTGTATTTCTTCGAAACAGGTGCCTAC AATACTTGTATAAACACGCCACACATGTTAGAACAAACTTCAATGATTCAAAAAA



consensusID : consensus_10069#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [CAATACCGCCCACCGGAACGGGAATCGTTAGCGCCGCCATCCGGCAACCGGCAAACGGATCCCGACCAANANACGGGAAACGCGGGCACAACGCGGCAAACCGGAAAGGGCAACGGTCGTCGGATACGGTAACAACGTTCCGTACGGAGTAGGCAACGCGCACGCATCGGTGTGCAAGGCGAAAATCGGCCGGCTGGGTAGTGGATTGGGCCTTGGGGAGGGGACGAGTCAGCAATTGATCGGTGCCTGAAAGGCCGATGGTATCCTCAAGAGCAACAGGGTTCAGAGGAATCGCAACCGGCCGATCAAAGTGCGTTCCTTTGCGGTGGACCGATTGGGGCAATCTATAGTTGCCGATGATTTGAATTACAGGTATGCAAGCCAAATGTCTTACTTGGATGTTGCCAAGCGCATGCCAGTAAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAAACTTCCCTTGAAACACTGTCCATACCCAGGTTGTTGTATTTCTTCGAAACAGGTGCCTACAATACTTGTATAAACACGCCACACATGTTAGAACAAACTTCAATGATTCAATTCACTCTTCCCATTGGTGTCCAAAAAAAA]

[-] EMBL CA761378             [CAATACCGCCCACCGGAACGGGAATCGTTAGCGCCGCCATCCGGCAACCGGCAAACGGATCCCGACCAANANACGGGAAACGCGGGCACAACGCGGCAAACCGGAAAGGGCAACGGTCGTCGGATACGGTAACAACGTTCCGTACGGAGTAGGCAACGCGCACGCATCGGTGTGCAAGGCGAAAATCGGCCGGCTGGGTAGTGGATTGGGCCTTGGGGAGGGGACGAGTCAGCAATTGATCGGTGCCTGAAAGGCCGATGGTATCCTCAAGAGCAACAGGGTTCAGAGGAATCGCAACCGGCCGATCAAAGTGCGTTCCTTTGCGGTGGACCGATTGGGGCAATCTATAGTTGCCGATGATTTGAATTACAGGTATGCAAGCCAAATGTCTTACTTGGATGTTGCCAAGCGCATGCCAGTAAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAAACTTCCCTTGAAACACTGTCCATACCCAGGTTGTTGTATTTCTTCGAAACAGGTGCCTACAATACTTGTATAAACACGCCACACATGTTAGAACAAACTTCAATGATTCAATTCACTCTTCCCATTGGTGTCCAAAAAAAA]


>consensus_10069#2 CAATACCGCCCACCGGAACGGGAATCGTTAGCGCCGCCATCCGGCAACCGGCAAACGGAT CCCGACCAANANACGGGAAACGCGGGCACAACGCGGCAAACCGGAAAGGGCAACGGTCGT CGGATACGGTAACAACGTTCCGTACGGAGTAGGCAACGCGCACGCATCGGTGTGCAAGGC GAAAATCGGCCGGCTGGGTAGTGGATTGGGCCTTGGGGAGGGGACGAGTCAGCAATTGAT CGGTGCCTGAAAGGCCGATGGTATCCTCAAGAGCAACAGGGTTCAGAGGAATCGCAACCG GCCGATCAAAGTGCGTTCCTTTGCGGTGGACCGATTGGGGCAATCTATAGTTGCCGATGA TTTGAATTACAGGTATGCAAGCCAAATGTCTTACTTGGATGTTGCCAAGCGCATGCCAGT AAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCCTATAGCTTAGCTGTAACA TGAGTGTATAGTTCGATAAAACTTCCCTTGAAACACTGTCCATACCCAGGTTGTTGTATT TCTTCGAAACAGGTGCCTACAATACTTGTATAAACACGCCACACATGTTAGAACAAACTT CAATGATTCAATTCACTCTTCCCATTGGTGTCCAAAAAAAA



consensusID : consensus_10069#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence
                              [GGGGATGGAGACACATCATGCGCTTCATCGGTGCTTGCGATGCCGATGGTCTGCCTGCACCGAACACACCACGGGTTCCAGAGGAATCTGCACACCGACCGATGCCAAGTACATTCCTGTTGGCGGTCGACCCGATTGGGACCATCTATAGTTGGAGCGATGGATTTGAATGTACCAGGTATACACAGCCTCAATGGTGCTGTAGCTTGGGATGGTTGGCCCAGCGGATGCCAGTGAAATTTGTTGTTGCTTCCGGAAGGCACACTGTGTTATGTCCACCCCCTATAGGCTTAGCTGTAACACTGGAGTGGTATAGTTGCGATAAAACTTGCCCTTGGAAACCCTGGTGCCATACCCCACGGTTGTTGGTGATTTCTTGCGAAACCACGGTGCCTACNATACTGTGTATAAACNCCCCACACNTGTTAGAACCAACTTCAATGATTCAATTCACTCTTCCCCTTGGTGTTCCAAAAAAAAAA]

[+] EMBL BM038527             [GGGGATGGAGACACATCATGCGCTTCATCGGTGCTTGCGATGCCGATGGTCTGCCTGCACCGAACACACCACGGGTTCCAGAGGAATCTGCACACCGACCGATGCCAAGTACATTCCTGTTGGCGGTCGACCCGATTGGGACCATCTATAGTTGGAGCGATGGATTTGAATGTACCAGGTATACACAGCCTCAATGGTGCTGTAGCTTGGGATGGTTGGCCCAGCGGATGCCAGTGAAATTTGTTGTTGCTTCCGGAAGGCACACTGTGTTATGTCCACCCCCTATAGGCTTAGCTGTAACACTGGAGTGGTATAGTTGCGATAAAACTTGCCCTTGGAAACCCTGGTGCCATACCCCACGGTTGTTGGTGATTTCTTGCGAAACCACGGTGCCTACNATACTGTGTATAAACNCCCCACACNTGTTAGAACCAACTTCAATGATTCAATTCACTCTTCCCCTTGGTGTTCCAAAAAAAAAA]


>consensus_10069#3 GGGGATGGAGACACATCATGCGCTTCATCGGTGCTTGCGATGCCGATGGTCTGCCTGCAC CGAACACACCACGGGTTCCAGAGGAATCTGCACACCGACCGATGCCAAGTACATTCCTGT TGGCGGTCGACCCGATTGGGACCATCTATAGTTGGAGCGATGGATTTGAATGTACCAGGT ATACACAGCCTCAATGGTGCTGTAGCTTGGGATGGTTGGCCCAGCGGATGCCAGTGAAAT TTGTTGTTGCTTCCGGAAGGCACACTGTGTTATGTCCACCCCCTATAGGCTTAGCTGTAA CACTGGAGTGGTATAGTTGCGATAAAACTTGCCCTTGGAAACCCTGGTGCCATACCCCAC GGTTGTTGGTGATTTCTTGCGAAACCACGGTGCCTACNATACTGTGTATAAACNCCCCAC ACNTGTTAGAACCAACTTCAATGATTCAATTCACTCTTCCCCTTGGTGTTCCAAAAAAAA AA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TCTTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCACGCTTCCGCAAATTTCCGATCTCCTC 60
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      CTCCTCCTCATCCAGCTCGCTCGCTCGCTCGCGGCGGAGAATCCAGCCCGAGCAGGCTGG 120
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      CTTGTGCTTGAGCTAGAATCTCCGGCCCCGTCGCAGGCTCCGTATCAACCAAGATATAAG 180
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      CTCCACACGGTTTATTGAACATTTGTGCCAGACTATTGGGGTGAACATTCAGTCAAGTCT 240
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TCAAAGTGTTTATTCCAAAACAAATGCAATGAGTTGTCATACAAGGGGCTTGTTGAAGGA 300
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      ATACAACATATATTTATAGGCGATCACCTATATTTTTCTGACTCATGGGCGACTGGGTTA 360
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGTACCAACCTTCTGA 420
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      AATTGGGCCATGATCAGAGAGAGAAGCTTTCGACAACCAACAACAATCAAGGCAATGACA 480
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      AATTTGTTCAGAAGTCAGTTATGCATTTTCAAACTTGGAGAATAGGCATACTGTTCTTTG 540
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      CTGCGGGAAACTGCCTCAACTTCATGTCCTTCGCATATGCCGCACAGTCACTTCTTGCAG 600
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      CTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGA 660
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      CCATTTCAGTGAAAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAG 720
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TTTCCTTTGGTAATCATCAATCTCCAGTTTACACCCCGGAGCAGCTAGTTGCGAAATACA 780
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      GCAATTTAGTGTTTGTTCTCTATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGT 840
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      ATCTCTACAGGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATT 900
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      GGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGATCTTGTTCTG 960
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TCTTATTTGCAAAATCATTGTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGT 1020
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TCCATAGCTGGTTCACATACTCAATGCTTCTGTTGTTCCTCTTTACAGCTGGCTTTTGGA 1080
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TGGCGAGATTGAATGAAGGCCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTC 1140
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------------------------------
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      AGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAG 1200
consensus_10069#1      ------------------------------------------------------------
                                                                                   

consensus_10069#2      ------------------------------------CAATACCGCCCACCGGAACGGGAA 24
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCA 1260
consensus_10069#1      ------------------TAGTGATGTTTGTATTGG-CATNACATCTGTCTTTATAGGCA 41
                                                                                   

consensus_10069#2      TCGTTAGCGCCGCCATCCGGCAACCGGCAAA-------C------GGATC------CCGA 65
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TC-TCCTTACTGGCACCCGACGACAGTAAAG------------ATGGTTC-TAGTGCCAC 1306
consensus_10069#1      TC-TCCTTACTGNCACCCGACGACAGTAAAGTTGACNCCAAAGATGGTTCCTAGTGCCAC 100
                                                                                   

consensus_10069#2      CCAANANACGGGAA---ACGCGGGCACAACGCGGCAAACCGGAAAGGGCAACGGTCGTCG 122
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      CCAGGAACCTGCAATTGATGCAAACA-GGCCTGGAAAGATGCAGACGGAGGAGACAGAAG 1365
consensus_10069#1      CCAGGAACCTGCAATTGATGCAAACA-GGCCTGGAAAGATGCAGACGGAGGAGCCAGAAG 159
                                                                                   

consensus_10069#2      GATACGGTAACAACGTTCCGTACGGAGTAGGCAACGCGCACGCAT------CGGTGTGCA 176
consensus_10069#3      ------------------------------------------------------------
consensus_10069#0      TTGATGGTACTAACTCCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCA 1425
consensus_10069#1      TTGATGGTACTAACTCCTTCACAAGTTCAGTAAAAGTAAAAGCAAAACGCATACTGTCCA 219
                                                                                   

consensus_10069#2      AGGCGAAAATCGGCCGGCTGGGTAGTGGATTGGGCCTTGGGGAGGGGACGAGTCA-GCAA 235
consensus_10069#3      -------------------------------------GGGGATGGAGACACATCATGCGC 23
consensus_10069#0      AGGC-AAAGTCGGCTTGCTCCATGTC--ACTTGGCCTTGGGGAGGAGACCATC-A-GCGC 1480
consensus_10069#1      AGGC-AAAGTCGGCTTGCTCCATGTC--ACTTGGCCTTGGGGAGGAGACCATCCA-GCGC 275
                                                             ***  ** ***     * **  

consensus_10069#2      TTGATCGGTGCCTGAAAGGCCGATGGTATCCT-----CAAGAGCA--ACAGGGTTCAGAG 288
consensus_10069#3      TTCATCGGTGCTTGCGATGCCGATGGTCTGCCTGCACCGAACACACCACGGGTTCCAGAG 83
consensus_10069#0      TTCATCGGTGCTTGCGATGCCGATGGTCTCCT-----CACGAACA--ACAGGGTTCAGAG 1533
consensus_10069#1      TTCATCGGTGCTTGCGATGCCGATGGTCTCCT-----CACGAACA--ACAGGGTTCAGAG 328
                       ** ******** **  * ********* * *      *     **  ** ** * *****

consensus_10069#2      GAATC-GCA-ACCGGCCGAT-CAAAGTGCGTTCCTTT--GCGGTGGACC-GATTGGGGCA 342
consensus_10069#3      GAATCTGCACACCGACCGATGCCAAGTACATTCCTGTTGGCGGTCGACCCGATTGGGACC 143
consensus_10069#0      GAATC-GCA-ACCGACCGAT-CAAAGTACATTCCTTT--GCGGTCGACC-GATTGGGACA 1587
consensus_10069#1      GAATC-GCA-ACCGACCGAT-CNAAGTACATTCCTTT--GCGGTCGACC-GATTGGGACA 382
                       ***** *** **** ***** * **** * ***** *  ***** **** ******* * 

consensus_10069#2      ATCTATAGTTGC--CGATG-ATTTGAAT-TAC-AGGTATGCA-AGCCA-AATG----TCT 391
consensus_10069#3      ATCTATAGTTGGAGCGATGGATTTGAATGTACCAGGTATACACAGCCTCAATGGTGCTGT 203
consensus_10069#0      ATCTATAGTTGA--CGATG-ATTTGAAT-TAC-AGGTATACA-AGCCA-AATG----TCT 1636
consensus_10069#1      ATCTATAGTTGA--CGATG-ATTTGAAT-TAC-AGGTATACA-AGCCA-AATG----TCT 431
                       ***********   ***** ******** *** ****** ** ****  ****    * *

consensus_10069#2      TACTTGG-ATG--TTGCCAAGCGCATGCCAGTAAATTTT--TGTTGCTTCCGGAAGGCA- 445
consensus_10069#3      AGCTTGGGATGGTTGGCCCAGCGGATGCCAGTGAAATTTGTTGTTGCTTCCGGAAGGCAC 263
consensus_10069#0      TACTTGG-ATG--TTGCCAAGCGGATGCCAGTAAATTTT--TGTTGCTTCCGGAAGGCA- 1690
consensus_10069#1      TACTTGG-ATG--TTGCCAAGCGGATGCCAGTAAATTTT--TGTTGCTTCCGGAAGGCA- 485
                         ***** ***  * *** **** ******** ** ***  ****************** 

consensus_10069#2      ACTGT-TTAT-TCCACCCC-TATAG-CTTAGCTGTAACAT--GAGTG-TATAGTT-CGAT 497
consensus_10069#3      ACTGTGTTATGTCCACCCCCTATAGGCTTAGCTGTAACACTGGAGTGGTATAGTTGCGAT 323
consensus_10069#0      ACTGT-TTAT-TCCACCCC-TATAG-CTTAGCTGTAACAT--GAGTG-TATAGTT-CGAT 1742
consensus_10069#1      ACTGT-TTAT-TCCACCCC-TATAG-CTTAGCTGTAACAT--GAGTG-TATAGTT-CGAT 537
                       ***** **** ******** ***** *************   ***** ******* ****

consensus_10069#2      AAAACTTCCCTT--GAAACACTGT--CCATACCC--AGGTTGTTG--TATTTCTT-CGAA 548
consensus_10069#3      AAAACTTGCCCTTGGAAACCCTGGTGCCATACCCCACGGTTGTTGGTGATTTCTTGCGAA 383
consensus_10069#0      AAAACTTCCCTT--GAAACACTGT--CCATACCC--AGGTTGTTG--TATTTCTT-CGAA 1793
consensus_10069#1      AAAACTTCCCTT--GAAACACTGT--CCATACCC--AGGTTGTTG--TATTTCTT-CGAA 588
                       ******* ** *  ***** ***   ********   ********   ******* ****

consensus_10069#2      AC--AGGTGCCTACAATACT-TGTATAAACACGCCACACATGTTAGAACAAACTTCAATG 605
consensus_10069#3      ACCACGGTGCCTACNATACTGTGTATAAACNCCCCACACNTGTTAGAACCAACTTCAATG 443
consensus_10069#0      AC--AGGTGCCTACAATACT-TGTATAAACACGCCACACATGTTAGAACAAACTTCAATG 1850
consensus_10069#1      AC--AGGTGCCTACAATACT-TGTATAAACACGCCACACATGTTAGAACAAACTTCAATG 645
                       **   ********* ***** ********* * ****** ********* **********

consensus_10069#2      ATTCAATTCACTCTTCCCATTGGTGTCCAAAAAAAA---- 641
consensus_10069#3      ATTCAATTCACTCTTCCCCTTGGTGTTCCAAAAAAAAAA- 482
consensus_10069#0      ATTCAATTCACTCTTCCCATTGGTNTTCCAAAAAAAAAAA 1890
consensus_10069#1      ATTCAAAAAA------------------------------ 655
                       ******   *                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)