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Oryza sativa
cluster # 10072 cluster # 10072       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10072#0 length = 2599 sequences # 6  
consensus_10072#1 length = 662 sequences # 1  

consensusID : consensus_10072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2599
fasta sequence
                              [CCAGCATTCTCAGCTGCTGATTCTCAGGCTGATTCTACTTGGTTGGTAGAAAATCTACTTATCCAGGAACAGGCGACGGAACATACGAAGGACACACGTCCTACGAAGCAATATGAGATTCTCAAAACAGGGAAGGCTACGGATACACATGGGGCTAGGCTAACAAGTATCTTCGTTTGACCCTGGATTGTTTCATTCCACCCTTCCCTCTTCTAACTAGTCTTCTCTTATCCACGAACGGATAGAACTCTGATCCTCTTTAGCCCCGAGAAAGGAAGATGAGCTAGGGCAAAGAGACGGCAATACTTACCTAATAGGTATTATGAAGGGGGAAATCAAGCTTTATTTCTCTTTATAGTGAAGCTAGCCTCTTAGGCGCAGTGTCAGACATCTTAGCTATGTAGGGAATAGCGGTCAGTGCTGCTTGATTGAGTCTTTGTCTTGCAGTTGCAGGAGTGATGTCAAACCTCTTGCTTGAGTTGTCTGTATTGGAAGTCGTGTAAGCGGCTTCTTCCGCCTTCCGGGTCTAGTACGTATGAAAAGATGTCAGCGTCGTGGCGATTGCCTTTCCTGGTGGTGAAGGATTCTATTCCCGAGCGGCTAAGGTCCAATCCGGTATTCTATTTCGTCTGTGCGAGCATTAAAACCAACCATTTCCGACGTCAAGATCAATAGGAAGAAAAGGGAGTCTTTTTCTGTCTTGAGGGTTTTATTTTAAATCCAAATCGAAATGCCTCAACTTGATAAATTGACTTATTTCTCACAATTCTTCTGGTTCTGCCTTCTCCTAGTAAGTAGCTCACGAGGAATGGGGGGACAGATTCCCTCAATCTCGAGATACGAACGTATCGTGTCAAAATTTATTGGAAAATTTTTCTTCAGTGGTTTGTGGACCGATAGACCTTACCTTATTTTTATTTTTATTTCCCTCATTTTTTTGGGACTTTATATTGTCAGAAGGAGGAGGGAGGCTTTTTCCTCTACTCTAATTGGTTCCTTCTCTGGTTTGTTTTCGTTTTTTTTTGTGGAAGGCCCAGAGGTTGCTTCCGCTATGGAGAACCCACCAGGGCCTGGGCCTAGTGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCGTCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCG-GGGAAGAGGTGCCGCAAGGGGAACAGCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCCGAACCCTGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCC--------CCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATAAAGAAGAATGA-CCGTAAATCATTTCGAAAGAACTACG-AAAGCAACCCTGATCTTTCTTCTATGAAGAAAGTACGTAGGCACTCCTCAGCG-AGGACGCGGGTTTTAAAGTAGGTTCTACACATTCGAGAAGACCCAGGCGGATTGGAGTGGTTGTGCGCCGGGGCAATCTCTGCTTGCATTTCGCATTGGAATTTCTTGACTAGCCCGAATAGATGGACTCGTTCGTTCGGTCGGGCGGGGCAAATCTCTAAAGTGGAATTCGTGAAAAGGTACCACACTCAAATCACATATGATATTATGTCAAACAAATCAACTAGCTAAAAAGCTAGGAATTTATGTAGAAGTCTGAGCTGGTCAGAGTTCAACTCACTACTCGGGCTCCTTTTCAGTTAAGGATGCAAGGGAGACTTCCATGTCTGGGGCTGACAGCTTTCGTGTACTGAATTTCTATGAGATTCTCTTGTCCGCGGGAACAAAAAGGTAGTAAATTCAGTACACGAAATTAGGATATTCTAGACAACGAAAAGCTAAACAAAGAAAGGAATGACAATGAGTGTGGAAAATCCATCTACACAAATCTACTCACTACGAGGAGGTAATCAATCTTATGCTCAGGCAATTCATTCGTATAAATCACTACTCGGGGTGTAGAGGAAGGAAATCAGGGGAATCCCCGGTATTAAAGTAGACAGATCAAGACTAGTAGGAAAGGATACTCCACGCACTAGAGCTTTGTCTGGTCAAAGTGCTCATTCTAAGGTTCAATGCGCCGCAGAACGAGTGCTATTCCTTTTATGAAATTACACCGGGAAGGAATTGAGCAAGCCAAGTCATTTAACTCACTCCACTTAAGATTGAACAACCCCAGTCAGTGTTGGTTTTGGGGTAAAGAAAACTATGATAGCTAGCTAATTCAAGAAATTCTATTCCATGAAATTCTTCCTCCGGACAAGAAAGAGTGC]

[+] EMBL AK106606             [CCAGCATTCTCAGCTGCTGATTCTCAGGCTGATTCTACTTGGTTGGTAGAAAATCTACTTATCCAGGAACAGGCGACGGAACATACGAAGGACACACGTCCTACGAAGCAATATGAGATTCTCAAAACAGGGAAGGCTACGGATACACATGGGGCTAGGCTAACAAGTATCTTCGTTTGACCCTGGATTGTTTCATTCCACCCTTCCCTCTTCTAACTAGTCTTCTCTTATCCACGAACGGATAGAACTCTGATCCTCTTTAGCCCCGAGAAAGGAAGATGAGCTAGGGCAAAGAGACGGCAATACTTACCTAATAGGTATTATGAAGGGGGAAATCAAGCTTTATTTCTCTTTATAGTGAAGCTAGCCTCTTAGGCGCAGTGTCAGACATCTTAGCTATGTAGGGAATAGCGGTCAGTGCTGCTTGATTGAGTCTTTGTCTTGCAGTTGCAGGAGTGATGTCAAACCTCTTGCTTGAGTTGTCTGTATTGGAAGTCGTGTAAGCGGCTTCTTCCGCCTTCCGGGTCTAGTACGTATGAAAAGATGTCAGCGTCGTGGCGATTGCCTTTCCTGGTGGTGAAGGATTCTATTCCCGAGCGGCTAAGGTCCAATCCGGTATTCTATTTCGTCTGTGCGAGCATTAAAACCAACCATTTCCGACGTCAAGATCAATAGGAAGAAAAGGGAGTCTTTTTCTGTCTTGAGGGTTTTATTTTAAATCCAAATCGAAATGCCTCAACTTGATAAATTGACTTATTTCTCACAATTCTTCTGGTTCTGCCTTCTCCTAGTAAGTAGCTCACGAGGAATGGGGGGACAGATTCCCTCAATCTCGAGATACGAACGTATCGTGTCAAAATTTATTGGAAAATTTTTCTTCAGTGGTTTGTGGACCGATAGACCTTACCTTATTTTTATTTTTATTTCCCTCATTTTTTTGGGACTTTATATTGTCAGAAGGAGGAGGGAGGCTTTTTCCTCTACTCTAATTGGTTCCTTCTCTGGTTTGTTTTCGTTTTTTTTTGTGGAAGGCCCAGAGGTTGCTTCCGCTATGGAGAACCCACCAGGGCCTGGGCCTAGTGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCGTCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCG GGGAAGAGGTGCCGCAAGGGGAACAGCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCCGAACCCTGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCCCAATTAGACCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATAAAGAAGAATGA CCGTAAATCATTTCGAAAGAACTACG AAAGCAACCCTGATCTTTCTTCTATGAAGAAAGTACGTAGGCACTCCTCAGCG AGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AK107620             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAGAGGTTGCTTCCGCTATGGAGAACCCACCAGGGCCTGGGCCTAGTGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCGTCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCG GGGAAGAGGTGCCGCAAGGGGAACAGCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCCGAACCCTGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCCCAATTAGACCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATAAAGAAGAATGA CCGTAAATCATTTCGAAAGAACTACG AAAGCAACCCTGATCTTTCTTCTATGAAGAAAGTACGTAGGCACTCCTCAGCG AGGACGCGGGTTTTAAAGTAGGTTCTACACATTCGAGAAGACCCAGGCGGATTGGAGTGGTTGTGCGCCGGGGCAATCTCTGCTTGCATTTCGCATTGGAATTTCTTGACTAGCCCGAATAGATGGACTCGTTCGTTCGGTCGGGCGGGGCAAATCTCTAAAGTGGAATTCGTGAAAAGGTACCACACTCAAATCACATATGATATTATGTCAAACAAATCAACTAGCTAAAAAGCTAGGAATTTATGTAGAAGTCTGAGCTGGTCAGAGTTCAACTCACTACTCGGGCTCCTTTTCAGTTAAGGATGCAAGGGAGACTTCCATGTCTGGGGCTGACAGCTTTCGTGTACTGAATTTCTATGAGATTCTCTTGTCCGCGGGAACAAAAAGGTAGTAAATTCAGTACACGAAATTAGGATATTCTAGACAACGAAAAGCTAAACAAAGAAAGGAATGACAATGAGTGTGGAAAATCCATCTACACAAATCTACTCACTACGAGGAGGTAATCAATCTTATGCTCAGGCAATTCATTCGTATAAATCACTACTCGGGGTGTAGAGGAAGGAAATCAGGGGAATCCCCGGTATTAAAGTAGACAGATCAAGACTAGTAGGAAAGGATACTCCACGCACTAGAGCTTTGTCTGGTCAAAGTGCTCATTCTAAGGTTCAATGCGCCGCAGAACGAGTGCTATTCCTTTTATGAAATTACACCGGGAAGGAATTGAGCAAGCCAAGTCATTTAACTCACTCCACTTAAGATTGAACAACCCCAGTCAGTGTTGGTTTTGGGGTAAAGAAAACTATGATAGCTAGCTAATTCAAGAAATTCTATTCCATGAAATTCTTCCTCCGGACAAGAAAGAGTGC]
[+] EMBL CB967152             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGAGGTTGCTTCCGCTATGGAGAACCCACCAGGGCCTGGGCCTAGTGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCGTCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCG GGGAAGAGGTGCCGCAAGGGGAACAGCCCCGCTTCGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCCGAACCCTGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCC        CCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATAAAGAAGAATGA CCGTAAATCATTTCGAAAGAACTACG AAAGCCAACCTGATCTTTCTTCTATGAAGAAAGTACGT GGGACTTCTTAGCGAAGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BU673555             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAGGTTGCTTCCGCTATGGAGAACCCACCAGGNCCTGGGCCTAGTGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCGTCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCG GGGAAGAGGTGCCGCAAGGGGAACAGCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCCGAACCCTGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCC        CCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATAAAGAAGAATGA CCGTAAATCATTTCGAAAGAACTACG AAAGCGACCCTGATCTTTCTTCTATGAAGACAGTACGTAGGCACTCCTCAGCG AGGACGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB965136             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAGGTTGCTTCCGCTATGGAGAACCCACCAGGGCCTGGGCCTAGTGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCGTCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCG GGGAAGAGGTGCCGCAAGGGGAACAGCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCCGAACCCTGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCC        CCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATAAAGAAGAATGA CCGTAAATCATTTCGAAAGAACTACG AAAGGCACCCTGATCTTTCTTCTATGAAGAACGTACGTAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB967163             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAGGTTGCTTCCGCTATGGAGAACCCACCAGGGCCTGGGCCTAGTGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCGTCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCGNGGGAAGAGGTGCCGCAAGGGGAACAGCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCCGAACCCTGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCC        CCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATACAGAAGAATGACCCGT AATCATTTCGAAAGAACTACGAAAAGC ACCCTGATCTTTCTTCTATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_10072#0 CCAGCATTCTCAGCTGCTGATTCTCAGGCTGATTCTACTTGGTTGGTAGAAAATCTACTT ATCCAGGAACAGGCGACGGAACATACGAAGGACACACGTCCTACGAAGCAATATGAGATT CTCAAAACAGGGAAGGCTACGGATACACATGGGGCTAGGCTAACAAGTATCTTCGTTTGA CCCTGGATTGTTTCATTCCACCCTTCCCTCTTCTAACTAGTCTTCTCTTATCCACGAACG GATAGAACTCTGATCCTCTTTAGCCCCGAGAAAGGAAGATGAGCTAGGGCAAAGAGACGG CAATACTTACCTAATAGGTATTATGAAGGGGGAAATCAAGCTTTATTTCTCTTTATAGTG AAGCTAGCCTCTTAGGCGCAGTGTCAGACATCTTAGCTATGTAGGGAATAGCGGTCAGTG CTGCTTGATTGAGTCTTTGTCTTGCAGTTGCAGGAGTGATGTCAAACCTCTTGCTTGAGT TGTCTGTATTGGAAGTCGTGTAAGCGGCTTCTTCCGCCTTCCGGGTCTAGTACGTATGAA AAGATGTCAGCGTCGTGGCGATTGCCTTTCCTGGTGGTGAAGGATTCTATTCCCGAGCGG CTAAGGTCCAATCCGGTATTCTATTTCGTCTGTGCGAGCATTAAAACCAACCATTTCCGA CGTCAAGATCAATAGGAAGAAAAGGGAGTCTTTTTCTGTCTTGAGGGTTTTATTTTAAAT CCAAATCGAAATGCCTCAACTTGATAAATTGACTTATTTCTCACAATTCTTCTGGTTCTG CCTTCTCCTAGTAAGTAGCTCACGAGGAATGGGGGGACAGATTCCCTCAATCTCGAGATA CGAACGTATCGTGTCAAAATTTATTGGAAAATTTTTCTTCAGTGGTTTGTGGACCGATAG ACCTTACCTTATTTTTATTTTTATTTCCCTCATTTTTTTGGGACTTTATATTGTCAGAAG GAGGAGGGAGGCTTTTTCCTCTACTCTAATTGGTTCCTTCTCTGGTTTGTTTTCGTTTTT TTTTGTGGAAGGCCCAGAGGTTGCTTCCGCTATGGAGAACCCACCAGGGCCTGGGCCTAG TGAAGCGGGTCCTTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCGTCGTC CTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCGGGGAAGAGGT GCCGCAAGGGGAACAGCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTCCCCTGGAACA CGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCCGAACCC TGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGT TATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGA CTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCCCCCGGACCGGGATGGAT TCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGT ATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTA ATGTATTCAATAAAATAAAGAAGAATGACCGTAAATCATTTCGAAAGAACTACGAAAGCA ACCCTGATCTTTCTTCTATGAAGAAAGTACGTAGGCACTCCTCAGCGAGGACGCGGGTTT TAAAGTAGGTTCTACACATTCGAGAAGACCCAGGCGGATTGGAGTGGTTGTGCGCCGGGG CAATCTCTGCTTGCATTTCGCATTGGAATTTCTTGACTAGCCCGAATAGATGGACTCGTT CGTTCGGTCGGGCGGGGCAAATCTCTAAAGTGGAATTCGTGAAAAGGTACCACACTCAAA TCACATATGATATTATGTCAAACAAATCAACTAGCTAAAAAGCTAGGAATTTATGTAGAA GTCTGAGCTGGTCAGAGTTCAACTCACTACTCGGGCTCCTTTTCAGTTAAGGATGCAAGG GAGACTTCCATGTCTGGGGCTGACAGCTTTCGTGTACTGAATTTCTATGAGATTCTCTTG TCCGCGGGAACAAAAAGGTAGTAAATTCAGTACACGAAATTAGGATATTCTAGACAACGA AAAGCTAAACAAAGAAAGGAATGACAATGAGTGTGGAAAATCCATCTACACAAATCTACT CACTACGAGGAGGTAATCAATCTTATGCTCAGGCAATTCATTCGTATAAATCACTACTCG GGGTGTAGAGGAAGGAAATCAGGGGAATCCCCGGTATTAAAGTAGACAGATCAAGACTAG TAGGAAAGGATACTCCACGCACTAGAGCTTTGTCTGGTCAAAGTGCTCATTCTAAGGTTC AATGCGCCGCAGAACGAGTGCTATTCCTTTTATGAAATTACACCGGGAAGGAATTGAGCA AGCCAAGTCATTTAACTCACTCCACTTAAGATTGAACAACCCCAGTCAGTGTTGGTTTTG GGGTAAAGAAAACTATGATAGCTAGCTAATTCAAGAAATTCTATTCCATGAAATTCTTCC TCCGGACAAGAAAGAGTGC



consensusID : consensus_10072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence
                              [AGAGGTTGCTACCCACTATGAGAAAACCCACCGGGGGCCTGGAGCCTACTGAATCGGGTCCATTACGGATCCAATAAGGGCAAAAGAGCTGAAGCCTTTTCTTCGGCGTGCAGATATTAAAATGGGCTTTATGGCCACATACCCGTGCCGGATTCCCCCTGGGAAGAGGTGCCAAAAGGGGAACAGCCCCATTTTAACCCTTATGGAATTCCGGAAGGTCGCCCTGGAACACGGATTGGGGGCTGTTCCATATCGGGGAGAGCCATCCACAATCCACACCCGAACGAACCCTGAACCTCAACTTGGAGAACAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCATACTGGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCCCCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATAAAGAAGAATGACCGTAAATCATTTCGAAAGAACTACGAAAGCAACCCTGATCTT]

[+] EMBL BI306469             [AGAGGTTGCTACCCACTATGAGAAAACCCACCGGGGGCCTGGAGCCTACTGAATCGGGTCCATTACGGATCCAATAAGGGCAAAAGAGCTGAAGCCTTTTCTTCGGCGTGCAGATATTAAAATGGGCTTTATGGCCACATACCCGTGCCGGATTCCCCCTGGGAAGAGGTGCCAAAAGGGGAACAGCCCCATTTTAACCCTTATGGAATTCCGGAAGGTCGCCCTGGAACACGGATTGGGGGCTGTTCCATATCGGGGAGAGCCATCCACAATCCACACCCGAACGAACCCTGAACCTCAACTTGGAGAACAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAGCATACTGGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCCCCCGGACCGGGATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCAATAAAATAAAGAAGAATGACCGTAAATCATTTCGAAAGAACTACGAAAGCAACCCTGATCTT]


>consensus_10072#1 AGAGGTTGCTACCCACTATGAGAAAACCCACCGGGGGCCTGGAGCCTACTGAATCGGGTC CATTACGGATCCAATAAGGGCAAAAGAGCTGAAGCCTTTTCTTCGGCGTGCAGATATTAA AATGGGCTTTATGGCCACATACCCGTGCCGGATTCCCCCTGGGAAGAGGTGCCAAAAGGG GAACAGCCCCATTTTAACCCTTATGGAATTCCGGAAGGTCGCCCTGGAACACGGATTGGG GGCTGTTCCATATCGGGGAGAGCCATCCACAATCCACACCCGAACGAACCCTGAACCTCA ACTTGGAGAACAAAATGCCGGGCCATCAAACCACCAAATTCAACATGATGTTATAAGAAG CATACTGGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGAGATAGACTCAATCAT TTTTATTAAGAAAGATATTATCGATCGCATGGCCCCCGGACCGGGATGGATTCTGGAATG AGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTAAAGAGTATACCTTAC AGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTAGCTGTAATGTATTCA ATAAAATAAAGAAGAATGACCGTAAATCATTTCGAAAGAACTACGAAAGCAACCCTGATC TT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10072#0      CCAGCATTCTCAGCTGCTGATTCTCAGGCTGATTCTACTTGGTTGGTAGAAAATCTACTT 60
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      ATCCAGGAACAGGCGACGGAACATACGAAGGACACACGTCCTACGAAGCAATATGAGATT 120
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CTCAAAACAGGGAAGGCTACGGATACACATGGGGCTAGGCTAACAAGTATCTTCGTTTGA 180
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CCCTGGATTGTTTCATTCCACCCTTCCCTCTTCTAACTAGTCTTCTCTTATCCACGAACG 240
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      GATAGAACTCTGATCCTCTTTAGCCCCGAGAAAGGAAGATGAGCTAGGGCAAAGAGACGG 300
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CAATACTTACCTAATAGGTATTATGAAGGGGGAAATCAAGCTTTATTTCTCTTTATAGTG 360
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      AAGCTAGCCTCTTAGGCGCAGTGTCAGACATCTTAGCTATGTAGGGAATAGCGGTCAGTG 420
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CTGCTTGATTGAGTCTTTGTCTTGCAGTTGCAGGAGTGATGTCAAACCTCTTGCTTGAGT 480
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      TGTCTGTATTGGAAGTCGTGTAAGCGGCTTCTTCCGCCTTCCGGGTCTAGTACGTATGAA 540
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      AAGATGTCAGCGTCGTGGCGATTGCCTTTCCTGGTGGTGAAGGATTCTATTCCCGAGCGG 600
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CTAAGGTCCAATCCGGTATTCTATTTCGTCTGTGCGAGCATTAAAACCAACCATTTCCGA 660
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CGTCAAGATCAATAGGAAGAAAAGGGAGTCTTTTTCTGTCTTGAGGGTTTTATTTTAAAT 720
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CCAAATCGAAATGCCTCAACTTGATAAATTGACTTATTTCTCACAATTCTTCTGGTTCTG 780
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CCTTCTCCTAGTAAGTAGCTCACGAGGAATGGGGGGACAGATTCCCTCAATCTCGAGATA 840
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CGAACGTATCGTGTCAAAATTTATTGGAAAATTTTTCTTCAGTGGTTTGTGGACCGATAG 900
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      ACCTTACCTTATTTTTATTTTTATTTCCCTCATTTTTTTGGGACTTTATATTGTCAGAAG 960
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      GAGGAGGGAGGCTTTTTCCTCTACTCTAATTGGTTCCTTCTCTGGTTTGTTTTCGTTTTT 1020
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      TTTTGTGGAAGGCCCAGAGGTTGCT-TCCGCTATG-GAGAACCCACCAGGG-CCTGG-GC 1076
consensus_10072#1      ---------------AGAGGTTGCTACCCACTATGAGAAAACCCACCGGGGGCCTGGAGC 45
                                      **********  ** ***** ** ******** *** ***** **

consensus_10072#0      CTAGTGAAGCGGGTCC-TTCCGGATCCGCTGCGGGCAAGTCAGCTGAAGCCTCTACTCCG 1135
consensus_10072#1      CTACTGAATCGGGTCCATTACGGATCCAATAAGGGCAAAAGAGCTGAAGCCTTTTCTTCG 105
                       *** **** ******* ** *******  *  ******   *********** * ** **

consensus_10072#0      TCGTCCTCTTTTTTCAATGGGCTTTCGGGCCAGATACCCGCACCGGATTCCCCCGGGGAA 1195
consensus_10072#1      GCGTGCAGATATTAAAATGGGCTTTATGGCCACATACCCGTGCCGGATTCCCCCTGGGAA 165
                        *** *   * **  **********  ***** *******  ************ *****

consensus_10072#0      GAGGTGCCGCAAGGGGAACAGCCCCGTTTTGACCCTTATTCAATTCCGGAAGTTC-CCCT 1254
consensus_10072#1      GAGGTGCCAAAAGGGGAACAGCCCCATTTTAACCCTTATGGAATTCCGGAAGGTCGCCCT 225
                       ********  *************** **** ********  *********** ** ****

consensus_10072#0      GGAACACGTATTCGGGGCTGTTCCAGATCGGGGAGAGCCATCCACAAGCCACACCCCGCC 1314
consensus_10072#1      GGAACACGGATTGGGGGCTGTTCCATATCGGGGAGAGCCATCCACAATCCACACCCGAAC 285
                       ******** *** ************ ********************* ********   *

consensus_10072#0      GAACCCTGAACCTCAACTTGGAGAAGAAAATGCCGGGCCATCAAACCACCAAATTCAACA 1374
consensus_10072#1      GAACCCTGAACCTCAACTTGGAGAACAAAATGCCGGGCCATCAAACCACCAAATTCAACA 345
                       ************************* **********************************

consensus_10072#0      TGATGTTATAAGAAGCAGACTTGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGA 1434
consensus_10072#1      TGATGTTATAAGAAGCATACTGGAAACTTGAACTCCCCAAAGGGAAGTAAGCGACGATGA 405
                       ***************** *** **************************************

consensus_10072#0      GATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCCCCCGGACCGGG 1494
consensus_10072#1      GATAGACTCAATCATTTTTATTAAGAAAGATATTATCGATCGCATGGCCCCCGGACCGGG 465
                       ************************************************************

consensus_10072#0      ATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTA 1554
consensus_10072#1      ATGGATTCTGGAATGAGCAAAAGGACCACTTAGTCGCTCATGGAATCCTCAATAAGGGTA 525
                       ************************************************************

consensus_10072#0      AAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTA 1614
consensus_10072#1      AAGAGTATACCTTACAGGGACTGATAAACCTTTCTAAAAAATTGGAAAAATCCGGTACTA 585
                       ************************************************************

consensus_10072#0      GCTGTAATGTATTCAATAAAATAAAGAAGAATGACCGTAAATCATTTCGAAAGAACTACG 1674
consensus_10072#1      GCTGTAATGTATTCAATAAAATAAAGAAGAATGACCGTAAATCATTTCGAAAGAACTACG 645
                       ************************************************************

consensus_10072#0      AAAGCAACCCTGATCTTTCTTCTATGAAGAAAGTACGTAGGCACTCCTCAGCGAGGACGC 1734
consensus_10072#1      AAAGCAACCCTGATCTT------------------------------------------- 662
                       *****************                                           

consensus_10072#0      GGGTTTTAAAGTAGGTTCTACACATTCGAGAAGACCCAGGCGGATTGGAGTGGTTGTGCG 1794
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CCGGGGCAATCTCTGCTTGCATTTCGCATTGGAATTTCTTGACTAGCCCGAATAGATGGA 1854
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CTCGTTCGTTCGGTCGGGCGGGGCAAATCTCTAAAGTGGAATTCGTGAAAAGGTACCACA 1914
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CTCAAATCACATATGATATTATGTCAAACAAATCAACTAGCTAAAAAGCTAGGAATTTAT 1974
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      GTAGAAGTCTGAGCTGGTCAGAGTTCAACTCACTACTCGGGCTCCTTTTCAGTTAAGGAT 2034
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      GCAAGGGAGACTTCCATGTCTGGGGCTGACAGCTTTCGTGTACTGAATTTCTATGAGATT 2094
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CTCTTGTCCGCGGGAACAAAAAGGTAGTAAATTCAGTACACGAAATTAGGATATTCTAGA 2154
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      CAACGAAAAGCTAAACAAAGAAAGGAATGACAATGAGTGTGGAAAATCCATCTACACAAA 2214
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      TCTACTCACTACGAGGAGGTAATCAATCTTATGCTCAGGCAATTCATTCGTATAAATCAC 2274
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      TACTCGGGGTGTAGAGGAAGGAAATCAGGGGAATCCCCGGTATTAAAGTAGACAGATCAA 2334
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      GACTAGTAGGAAAGGATACTCCACGCACTAGAGCTTTGTCTGGTCAAAGTGCTCATTCTA 2394
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      AGGTTCAATGCGCCGCAGAACGAGTGCTATTCCTTTTATGAAATTACACCGGGAAGGAAT 2454
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      TGAGCAAGCCAAGTCATTTAACTCACTCCACTTAAGATTGAACAACCCCAGTCAGTGTTG 2514
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      GTTTTGGGGTAAAGAAAACTATGATAGCTAGCTAATTCAAGAAATTCTATTCCATGAAAT 2574
consensus_10072#1      ------------------------------------------------------------
                                                                                   

consensus_10072#0      TCTTCCTCCGGACAAGAAAGAGTGC 2599
consensus_10072#1      -------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)