These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1219 fasta sequence [CACACATGGCAGGTACAAACCACTGAGCTAACCACAGTAGCTCACAGGCCATTATCCTGTCAGTACTTAAGAGAGTGAAGCACGCAACACACGGTTGCTAATCTCCTTAGCCCTCTCCTCCATTGGAGCTATAGCTAGCAAAC-TTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAGCGAAAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTGTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGCGACCGGAACCTGCTGCTGGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACCAAGAAGCTCAAGAGGAAGGTGGGCTCCGGTGAGATCGTCGAGCTGAGGACCGTCGACACGTTCGAGGCGG-CGGCGGCGATGTTCCCGGGCGGGATGATCATGCCGCCGCCGGCGCCGGGGAGCAAGGACGCCGCCGCCGCCAGGGCGATGGCGACGACGCGGGCGTCGCCGTACCACTACCAGCCG-TCGCCGTACGGCCCGTACCACCAGCAGCAGCAGTGGCAGCCGCCGTACGCCATGGCGCCCAGCCCGTACGCGTA-CCCGTACCAGTACCACCCGTCGCCGATGGCGATGGCCGCCGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTC-CCGCGCGGTGGCGCTCAGCCACCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTGAAGTTCTTGCAAGAACAAAAAAAAAAAAA] [+] EMBL AK102380 [CACACATGGCAGGTACAAACCACTGAGCTAACCACAGTAGCTCACAGGCCATTATCCTGTCAGTACTTAAGAGAGTGAAGCACGCAACACACGGTTGCTAATCTCCTTAGCCCTCTCCTCCATTGGAGCTATAGCTAGCAAACTTTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAGCGAAAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTGTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGCGACCGGAACCTGCTGCTGGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACCAAGAAGCTCAAGAGGAAGGTGGGCTCCGGTGAGATCGTCGAGCTGAGGACCGTCGACACGTTCGAGGCGG CGGCGGCGATGTTCCCGGGCGGGATGATCATGCCGCCGCCGGCGCCGGGGAGCAAGGACGCCGCCGCCGCCAGGGCGATGGCGACGACGCGGGCGTCGCCGTACCACTACCAGCCG TCGCCGTACGGCCCGTACCACCAGCAGCAGCAGTGGCAGCCGCCGTACGCCATGGCGCCCAGCCCGTACGCGTA CCCGTACCAGTACCACCCGTCGCCAATGGCGATGGCCGCCGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTC CCGCGCGGTGGCGCTCAGCCACCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTG ] [+] EMBL C26476 [ GCCATTATCCTGTCAGTACTTAAGAGAGTGAAGCACGCAACACACGGTTGCTAATCTCCTTAGCCCTCTCCTCCATTGGAGCTATAGCTAGCAAAC TTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAG NATAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGNGGCTGCTACTGTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGCGACCGGAACCTGCTGCTGGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACCANGAAGCTCAAGAGGAAGGTGGGCTCCGGTNAGATCGTCGAGCTGAGGACCGTCGACACGTTCGGGGGGGCCGGCGGCGATGTTCCC ] [+] EMBL AK059791 [ CTTAGCCCTCTCCTCCATTGGAGCTATAGCTAGCAAAC TTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAGCGAAAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTGTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGCGACCGGAACCTGCTGCTGGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACCAAGAAGCTCAAGAGGAAGGTGGGCTCCGGTGAGATCGTCGAGCTGAGGACCGTCGACACGTTCGAGGCGG CGGCGGCGATGTTCCCGGGCGGGATGATCATGCCGCCGCCGGCGCCGGGGAGCAAGGACGCCGCCGCCGCCAGGGCGATGGCGACGACGCGGGCGTCGCCGTACCACTACCAGCCG TCGCCGTACGGCCCGTACCACCAGCAGCAGCAGTGGCAGCCGCCGTACGCCATGGCGCCCAGCCCGTACGCGTA CCCGTACCAGTACCACCCGTCGCCGATGGCGATGGCCGCCGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTC CCGCGCGGTGGCGCTCAGCCACCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTGAAG ] [+] EMBL AU108638 [ aatTACCAGCCGTTCGCCGTACGGCCCGTACCACCAGCAGCAGAAGTGGCAGCCGCCGTACGCCATGGCNCCCAGCCCGTACGCGTACCCCGTACCAGTACCACCCGTCGCCGATGGCGATGCGCGCCGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTCNCCGCGCGGTGGCGCTCAGCCACCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTaaaaaaa ] [+] EMBL AU070972 [ GCCGCCACCACGAGAGCGACA CAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTGAAGTTCTTGCAAGAACAAAAAAAAAAAAA] [+] EMBL AU108582 [ CACCACGAGAGCGACAGCAACGCNTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAATTTGGCAGNTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTaaaaaaa ] consensusID : consensus_10084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [NCNAANTACTTAAGAGAGTGAAGCACGCAACACACGGTTNCTAATCTCCTTAGCCCTCTNCTCCATTGGAGCTATAGCTAGCAAACTTTNNNANTTACTGAGCAAATTCAGTTAGCGACGANAGACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTTGTCAGCGGGGTGCAGTCGGTNACGCTGGCCGGCGGGAACCGGAACCTTGCTTCTTGGTGATCGGCGAGGGCNTGGACACGAACAAGCTNACCCAAGAAGCTCAAGAGGAAGGTTGGCTTCGGTTAGATCGTCGAGCTTAGGGNCCTCGGACACGGTTCGAGGCNGCGGCCGGCAAATGTTTCCCGGG] [+] EMBL C26749 [NCNAANTACTTAAGAGAGTGAAGCACGCAACACACGGTTNCTAATCTCCTTAGCCCTCTNCTCCATTGGAGCTATAGCTAGCAAACTTTNNNANTTACTGAGCAAATTCAGTTAGCGACGANAGACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGAAGGCCATGAAAGAGGCTGCTACTTGTCAGCGGGGTGCAGTCGGTNACGCTGGCCGGCGGGAACCGGAACCTTGCTTCTTGGTGATCGGCGAGGGCNTGGACACGAACAAGCTNACCCAAGAAGCTCAAGAGGAAGGTTGGCTTCGGTTAGATCGTCGAGCTTAGGGNCCTCGGACACGGTTCGAGGCNGCGGCCGGCAAATGTTTCCCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10084#0 CACACATGGCAGGTACAAACCACTGAGCTAACCACAGTAGCTCACAGGCCATTATCCTGT 60 consensus_10084#1 ---------------------------------------------------------NCN 3 consensus_10084#0 CAGTACTTAAGAGAGTGAAGCACGCAACACACGGTTGCTAATCTCCTTAGCCCTCTCCTC 120 consensus_10084#1 AANTACTTAAGAGAGTGAAGCACGCAACACACGGTTNCTAATCTCCTTAGCCCTCTNCTC 63 * ********************************* ******************* *** consensus_10084#0 CATTGGAGCTATAGCTAGCAAACTTTTTTTTTTACTGAGCAAATTCAGTTAGCGAAGCGA 180 consensus_10084#1 CATTGGAGCTATAGCTAGCAAACTTTNNNANTTACTGAGCAAATTCAGTTAGCGACG-AN 122 ************************** ************************ * consensus_10084#0 AAACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGA 240 consensus_10084#1 AGACCATGAAGAAGGAGATCATTATCAGGATTTCCGTGAAAACCGACAAATGCCAGAAGA 182 * ********************************************************** consensus_10084#0 AGGCCATGAAAGAGGCTGCTACT-GTCAGCGGGGTGCAGTCGGTGACGCTGGCCGGCGGC 299 consensus_10084#1 AGGCCATGAAAGAGGCTGCTACTTGTCAGCGGGGTGCAGTCGGTNACGCTGGCCGGCGGG 242 *********************** ******************** ************** consensus_10084#0 GACCGGAACCT-GCTGCT-GGTGATCGGCGAGGGCGTGGACACGAACAAGCTGACC-AAG 356 consensus_10084#1 AACCGGAACCTTGCTTCTTGGTGATCGGCGAGGGCNTGGACACGAACAAGCTNACCCAAG 302 ********** *** ** **************** **************** *** *** consensus_10084#0 AAGCTCAAGAGGAAGGTGGGCTCCGGTGAGATCGTCGAGCTGAGGACCGTCG-ACACG-T 414 consensus_10084#1 AAGCTCAAGAGGAAGGTTGGCTTCGGTTAGATCGTCGAGCTTAGGGNCCTCGGACACGGT 362 ***************** **** **** ************* *** * *** ***** * consensus_10084#0 TCGAGGCGGCGGC-GGCGA-TGTTCCCGGGCGGGATGATCATGCCGCCGCCGGCGCCGGG 472 consensus_10084#1 TCGAGGCNGCGGCCGGCAAATGTTTCCCGGG----------------------------- 393 ******* ***** *** * **** ** ** consensus_10084#0 GAGCAAGGACGCCGCCGCCGCCAGGGCGATGGCGACGACGCGGGCGTCGCCGTACCACTA 532 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 CCAGCCGTCGCCGTACGGCCCGTACCACCAGCAGCAGCAGTGGCAGCCGCCGTACGCCAT 592 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 GGCGCCCAGCCCGTACGCGTACCCGTACCAGTACCACCCGTCGCCGATGGCGATGGCCGC 652 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 CGGCGGCGGCGGCTACGGCTACGGCGGCAGCAGCTACTCCCGCGCGGTGGCGCTCAGCCA 712 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 CCCGGCCATCTACTCGCCGCTGGTGGAGAAGCACGACTACCACCCCATGAACCACTCCAC 772 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 CACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGCGCCGGCACCGGCCGCGC 832 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 CGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCA 892 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 CGAGAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAA 952 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 TTACCTATATATGTGCATGCATGTACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTT 1012 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 GTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTCTTTTGCGGTTAATTAAT 1072 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 TTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATAT 1132 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 CGTAAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTTCAGAGATTATCTGAA 1192 consensus_10084#1 ------------------------------------------------------------ consensus_10084#0 GTTCTTGCAAGAACAAAAAAAAAAAAA 1219 consensus_10084#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||