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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1678 fasta sequence
[ACATATTCAGATGAAATACTTGTAAATAAAAAGGAAAAAAAAGGAAGGAATTTGAAAGGAATCATATTGCGGTGATAGAGGAGAGACAAAAGTGCACAGCTAAGCTGTTTTAGTTTAGTAGTGCAGCAGTTGCAGATCTCCCCTCATCTCCAGCTTCTCCTCGTCGCCGGAGCTCGAGATGGCCGGCGGTGACCTGCGCCAGCGCCGGGCGGTGGCGGCGGCTGACGGGGAGGGGGACGGCAAGATGGGGTCAGGGGGAGAGGAGGCGGAGGTGAAGGGGAAGGGGCAGGGGAGGAAGGAGGCGCTGGGGTGGCTGGAGTGGGGGCGGGGGTGGATGGGAATCGTGGGGGAGTTCCTCTTCCAGCGCATCGCCGCCAGCAACCTCTCCAACCCGCTCGAGCTTCCCCCGCTCGACGGCGTCTCCTTCGTCGTCACCGGCGCCACCAGCGGCATCGGCCTCGAGATCGCCA-GACAACTTGCACTGGCAGGAGGTCATGTTGTGATGGCTGTTAGGAGAACCAAATTGGCGCAGGAGCTCATTCAGAAATGGCAGAATGATAATTCAGAGATAGGAAAGCCCCTTAATGCTGAGGTGATGGAGC-TTGACCTACTCTCTCTAGATTCAGTTGTAAAATTTGCCGATGCCTGGAATGCTCGTATGGCACCCCTACACGTATTGATCAACAACGCTGGCATTTTCTCTATAGGAGAACCCCAGCGTTTCTCAAAGGATGGGTATGAAGAACACATGCAAGTGAACCATCTTGCACCGGCTTTATTGGCAGTGTTGCTTCTACCTTCCCTTCTTCGTGGTTCTCCTAGCAGAATTGTAAACGTTAATTCAGTTATGCACACAGTAGGTTTTGTAGATGCTGAAGATATGAACTTGACATCTGGAAAACGGAAATTTACAAGTTTGATGGGATACTCAAATAGCAAGTTAGCACAGATAAAATTTAGCAGCATGCTTCACAGGAGGATTCCGGCAGAGGCTGAAATTAATGTTATTTGTGCCTCTCCTGGGATTGTTCATACAAATGTTGCAAGGGATCTCCCCAAGCTTGTTGTAGCTGCATATCATTTGATTCCGTACTTCATATTCGATGCTCAAGAAGGTTCAAGAAGTACACTGTTCGCAGCTTCTGATCCCCAAGTTCCAGATTACTGCGAGATGCTCAAGTCTGAAGACTGGCCTGTTTGTGCTTGCATCTCATATGACTGTAATCCAATGAATGCATCTGAAGAATCACATAACCTCGAGACGTCGCAGCTAGTATGGGAGAAGACATTAGAGATGATTGGCCTCCCACCAGATGCCGTGGACAAGTTCATCGAAGGGGAATCGGTTCAGTGTCGTTATGGACAACAGAAGGCAGAATAGGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCCATTTCATCATGCGATTAGTTTGCCAGTGGTTTTGTTCCAGTACTTTGTAATAGTACATCTGTCATACCCTTTTTTTTGTTTCATATGGTTGGTAAAAAAAACTGCGTCAAATAGAAGTATGACAAAACAAAGTTCGTTACAATTTATCTTTGCCCCTTGTTAAATGGCAAAACGTTTGTAGAGTTTTGAGTTGTAAAAGCATAGTCCCTTCATTCTTTGGGGATAATCAAGATATTTATTATTGTTTGGG]
[+] EMBL CB685685 [ACATATTCAGATGAAATACTTGTAAATAAAAAGGAAAAAAAAGGAAGGAATTTGAAAGGAATCATATTGCGGTGATAGAGGAGAGACAAAAGTGCACAGCTAAGCTGTTTTAGTTTAGTAGTGCAGCAGTTGCAGATCTCCCCTCATCTCCAGCTTCTCCTCGTCGCCGGAGCTCGAGATGGCCGGCGGTGACCTGCGCCAGCGCCGGGCGGTGGCGGCGGCTGACGGGGAGGGGGACGGCAAGATGGGGTCAGGGGGAGAGGAGGCGGAGGTGAAGGGGAAGGGGCAGGGGAGGAAGGAGGCGCTGGGGTGGCTGGAGTGGGGGCGGGGGTGGATGGGAATCGTGGGGGAGTTCCTCTTCCAGCGCATCGCCGCCAGCAACCTCTCCAACCCGCTCGAGCTTCCCCCGCTCGACGGCGTCTCCTTCGTCTTCACCGGCGCCACCATCGGCATCGGCCTCGAGATCGCCATCAC ACTTGCACTGGCAGGAGGTCATGTTATGATGGGTGTTAGGA ]
[+] EMBL OSR26851A [ AGCAACCTCTCCAACCCGCTCGAGCTTCCCCCGCTCGACGGCGTCTCCTTCGTCGTCACCGGCGCCACCAGCGGCATCGGCCTCGAGATCGCCA GACAACTTGCACTGGCAGGAGGTCATGTTGTGATGGCTGTTAGGAGAACCAAATTGGCGCAGGAGCTCATTCAGAAATGGCAGAATGATAATTCAGAGATAGGAAAGCCCCTTAATGCTGAGGTGATGGAGC TTGACCTACTCTCTCTAGATTCAGTTGTAAAATTTGCCGATGCCTGGAATGCTCGTATGGCACCCCTACACGTATTGATCAACAACGCTGGCATTTTCTCTATAGGAGAACCCCAG ]
[+] EMBL OSR21372A [ AGCAACCTCTCCAACCCGCTCGAGCTTCCCCCGCTCGACGGCGTCTCCTTCGTCGTCACCGGCGCCACCAGCGGCATCGGCCTCGAGATCGCCA GACAACTTGCACTGGCAGGAGGTCATGTTGTGATGGCTGTTAGGAGAACCAAATTGGCGCAGGAGCTCATTCAGAAATGGCAGAATGATAATTCAGAGATAGGAAAGCCCCTTAATGCTGAGGTGATGGAGCTTTGACCTACTCTCTCTAGATTCAGTTGTAAAATTTGC ]
[+] EMBL AF093628 [ CCTCTCCAACCCGCTCGAGCTTCCCCCGCTCGACGGCGTCTCCTTCGTCGTCACCGGCGCCACCAGCGGCATCGGCCTCGAGATCGCCA GACAACTTGCACTGGCAGGAGGTCATGTTGTGATGGCTGTTAGGAGAACCAAATTGGCGCAGGAGCTCATTCAGAAATGGCAGAATGATAATTCAGAGATAGGAAAGCCCCTTAATGCTGAGGTGATGGAGC TTGACCTACTCTCTCTAGATTCAGTTGTAAAATTTGCCGATGCCTGGAATGCTCGTATGGCACCCCTACACGTATTGATCAACAACGCTGGCATTTTCTCTATAGGAGAACCCCAGCGTTTCTCAAAGGATGGGTATGAAGAACACATGCAAGTGAACCATCTTGCACCGGCTTTATTGGCAGTGTTGCTTCTACCTTCCCTTCTTCGTGGTTCTCCTAGCAGAATTGTAAACGTTAATTCAGTTATGCACACAGTAGGTTTTGTAGATGCTGAAGATATGAACTTGACATCTGGAAAACGGAAATTTACAAGTTTGATGGGATACTCAAATAGCAAGTTAGCACAGATAAAATTTAGCAGCATGCTTCACAGGAGGATTCCGGCAGAGGCTGAAATTAATGTTATTTGTGCCTCTCCTGGGATTGTTCATACAAATGTTGCAAGGGATCTCCCCAAGCTTGTTGTAGCTGCATATCATTTGATTCCGTACTTCATATTCGATGCTCAAGAAGGTTCAAGAAGTACACTGTTCGCAGCTTCTGATCCCCAAGTTCCAGATTACTGCGAGATGCTCAAGTCTGAAGACTGGCCTGTTTGTGCTTGCATCTCATATGACTGTAATCCAATGAATGCATCTGAAGAATCACATAACCTCGAGACGTCGCAGCTAGTATGGGAGAAGACATTAGAGATGATTGGCCTCCCACCAGATGCCGTGGACAAGTTCATCGAAGGGGAATCGGTTCAGTGTCGTTATGGACAACAGAAGGCAGAATAGGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCCATTTCATCATGCGATTAGTTTGCCAGTGGTTTTGTTCCAGTACTTTGTAATAGTACATCTGTCATACCCTTTTTTTTGTTTCATATGGTTGGTAAAAAAAA ]
[-] EMBL CB685686 [ GACATCTGGAAAACGGAAATTTACAAGTTTGATGGGATACTCAAATAGCAAGTTAGCACAGATAAAATTTAGCAGCATGCTTCACAGGAGGATTCCGGCAGAGGCTGAAATTAATGTTATTTGTGCCTCTCCTGGGATTGTTCATACAAATGTTGCAAGGGATCTCCCCAAGCTTGTTGTAGCTGCATATCATTTGATTCCGTACTTCATATTCGATGCTCAAGAAGGTTCAAGAAGTACACTGTTCGCAGCTTCTGATCCCCAAGTTCCAGATTACTGCGAGATGCTCAAGTCTGAAGACTGGCCTGTTTGTGCTTGCATCTCATATGACTGTAATCCAATGAATGCATCTGAAGAATCACATAACCTCGAGACGTCGCAGCTAGTATGGGAGAAGACATTAGAGATGATTGGCCTCCCACCAGATGCCGTGGACAAGTTCATCGAAGGGGAATCGGTTCAGTGTCGTTATGGACAACAGAAGGCAGAATAGGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCCATTTCATCATGCGATTAGTTTGCCAGTGGTTTTGTTCCAGTACTTTGTAATAGTACATCTGTCATACCCTTTTTTTTGTTTCATATGGTTGGTAAATCTAACTGCGTCAAATAGAAGTATGACAAAACAAAGTTCGTTACAATTTATCTTTGCCCCTTGTTAAATGGCAAAACGTTTGTAGAGTTTTGAGTTGTAAAAGCATAGTCCCTTCATTCTTTGGGGATAATCAAGATATTTATTATTGTTTGGG]
consensusID : consensus_10094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[CAATGAATGCATCTGAAGAATCACATAACCTCGAGACTCGCAGCTAGTATGGGAGAAGACATTAGAGATGATTGGCCTCCCACCAGATGCCGTGGACAAGTTCATCGAAGGGGAATCGGTTCAGTGCCGTTATGGACACAGAAGCAGAATAGGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCCATTAGTTTGCCACGTGGTTTTGTTCCAGTACTTTGTAATAGTACATCTGTCATACCCTTTTTTTTTTTCATATGTTGTAAATCTAACTGCTCAATAGAAGTATGCAAACAATTCGTTACATTTATCTTTCCCCTTTTAAATGCCAAACTTTGTAGATTTTTGATTTAAAACCATACCCTTCATTCTTTGGGATAATCAAGATATTAATTATTTTTTGGGGGAAAAAA]
[+] EMBL BM420772 [CAATGAATGCATCTGAAGAATCACATAACCTCGAGACTCGCAGCTAGTATGGGAGAAGACATTAGAGATGATTGGCCTCCCACCAGATGCCGTGGACAAGTTCATCGAAGGGGAATCGGTTCAGTGCCGTTATGGACACAGAAGCAGAATAGGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCCATTAGTTTGCCACGTGGTTTTGTTCCAGTACTTTGTAATAGTACATCTGTCATACCCTTTTTTTTTTTCATATGTTGTAAATCTAACTGCTCAATAGAAGTATGCAAACAATTCGTTACATTTATCTTTCCCCTTTTAAATGCCAAACTTTGTAGATTTTTGATTTAAAACCATACCCTTCATTCTTTGGGATAATCAAGATATTAATTATTTTTTGGGGGAAAAAA]
consensusID : consensus_10094#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[GAGGACGAGACAAGGGGAATCGGTTCAGTGCCGTTATGGACAACAGAAGGCAGAATAGGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCCATTAGGTTGCCAGTGGNTTTGTTCCAGNACTTTGTAATAGTACATCTGTCATACCCTTTTTTGTTTCATATGGTTGGTAAATCTAACTGCGTCAAATAGAAGTATGACAAAACAAAGTTCGTTACAATTTATCTTTGCCCCTTGTTAAATGGCAAAACGTTTGNAGAGTTTTGAGTTGTAAAAGCATAGTCCCTTCATTCTTTGGGGATAATCAAGATA]
[+] EMBL CA764662 [GAGGACGAGACAAGGGGAATCGGTTCAGTGCCGTTATGGACAACAGAAGGCAGAATAGGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCCATTAGGTTGCCAGTGGNTTTGTTCCAGNACTTTGTAATAGTACATCTGTCATACCCTTTTTTGTTTCATATGGTTGGTAAATCTAACTGCGTCAAATAGAAGTATGACAAAACAAAGTTCGTTACAATTTATCTTTGCCCCTTGTTAAATGGCAAAACGTTTGNAGAGTTTTGAGTTGTAAAAGCATAGTCCCTTCATTCTTTGGGGATAATCAAGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10094#0 ACATATTCAGATGAAATACTTGTAAATAAAAAGGAAAAAAAAGGAAGGAATTTGAAAGGA 60
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 ATCATATTGCGGTGATAGAGGAGAGACAAAAGTGCACAGCTAAGCTGTTTTAGTTTAGTA 120
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 GTGCAGCAGTTGCAGATCTCCCCTCATCTCCAGCTTCTCCTCGTCGCCGGAGCTCGAGAT 180
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 GGCCGGCGGTGACCTGCGCCAGCGCCGGGCGGTGGCGGCGGCTGACGGGGAGGGGGACGG 240
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 CAAGATGGGGTCAGGGGGAGAGGAGGCGGAGGTGAAGGGGAAGGGGCAGGGGAGGAAGGA 300
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 GGCGCTGGGGTGGCTGGAGTGGGGGCGGGGGTGGATGGGAATCGTGGGGGAGTTCCTCTT 360
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 CCAGCGCATCGCCGCCAGCAACCTCTCCAACCCGCTCGAGCTTCCCCCGCTCGACGGCGT 420
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 CTCCTTCGTCGTCACCGGCGCCACCAGCGGCATCGGCCTCGAGATCGCCAGACAACTTGC 480
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 ACTGGCAGGAGGTCATGTTGTGATGGCTGTTAGGAGAACCAAATTGGCGCAGGAGCTCAT 540
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 TCAGAAATGGCAGAATGATAATTCAGAGATAGGAAAGCCCCTTAATGCTGAGGTGATGGA 600
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 GCTTGACCTACTCTCTCTAGATTCAGTTGTAAAATTTGCCGATGCCTGGAATGCTCGTAT 660
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 GGCACCCCTACACGTATTGATCAACAACGCTGGCATTTTCTCTATAGGAGAACCCCAGCG 720
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 TTTCTCAAAGGATGGGTATGAAGAACACATGCAAGTGAACCATCTTGCACCGGCTTTATT 780
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 GGCAGTGTTGCTTCTACCTTCCCTTCTTCGTGGTTCTCCTAGCAGAATTGTAAACGTTAA 840
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 TTCAGTTATGCACACAGTAGGTTTTGTAGATGCTGAAGATATGAACTTGACATCTGGAAA 900
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 ACGGAAATTTACAAGTTTGATGGGATACTCAAATAGCAAGTTAGCACAGATAAAATTTAG 960
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 CAGCATGCTTCACAGGAGGATTCCGGCAGAGGCTGAAATTAATGTTATTTGTGCCTCTCC 1020
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 TGGGATTGTTCATACAAATGTTGCAAGGGATCTCCCCAAGCTTGTTGTAGCTGCATATCA 1080
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 TTTGATTCCGTACTTCATATTCGATGCTCAAGAAGGTTCAAGAAGTACACTGTTCGCAGC 1140
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 TTCTGATCCCCAAGTTCCAGATTACTGCGAGATGCTCAAGTCTGAAGACTGGCCTGTTTG 1200
consensus_10094#1 ------------------------------------------------------------
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 TGCTTGCATCTCATATGACTGTAATCCAATGAATGCATCTGAAGAATCACATAACCTCGA 1260
consensus_10094#1 --------------------------CAATGAATGCATCTGAAGAATCACATAACCTCGA 34
consensus_10094#2 ------------------------------------------------------------
consensus_10094#0 GACGTCGCAGCTAGTATGGGAGAAGACATTAGAGATGATTGGCCTCCCACCAGATGCCGT 1320
consensus_10094#1 GAC-TCGCAGCTAGTATGGGAGAAGACATTAGAGATGATTGGCCTCCCACCAGATGCCGT 93
consensus_10094#2 ----------------------------------------------------------GA 2
*
consensus_10094#0 GGACAAGTTCATCGAAGGGGAATCGGTTCAGTGTCGTTATGGACAACAGAAGGCAGAATA 1380
consensus_10094#1 GGACAAGTTCATCGAAGGGGAATCGGTTCAGTGCCGTTATGGACA-CAGAAG-CAGAATA 151
consensus_10094#2 GGACGAGAC-----AAGGGGAATCGGTTCAGTGCCGTTATGGACAACAGAAGGCAGAATA 57
**** ** ******************* *********** ****** *******
consensus_10094#0 GGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCCATTTCATCATGC 1440
consensus_10094#1 GGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCC------------ 199
consensus_10094#2 GGCTATTTCGTAGACAGCAAATATGTGATAATTTCGAATGTTCGATCC------------ 105
************************************************
consensus_10094#0 GATTAGTTTGCCA-GTGGTTTTGTTCCAGTACTTTGTAATAGTACATCTGTCATACCCTT 1499
consensus_10094#1 -ATTAGTTTGCCACGTGGTTTTGTTCCAGTACTTTGTAATAGTACATCTGTCATACCCTT 258
consensus_10094#2 -ATTAGGTTGCCA-GTGGNTTTGTTCCAGNACTTTGTAATAGTACATCTGTCATACCCTT 163
***** ****** **** ********** ******************************
consensus_10094#0 TTTTTTGTTTCATATGGTTGGTAAAAAAAACTGCGTCAAATAGAAGTATGACAAAACAAA 1559
consensus_10094#1 TTTTTT-TTTCATATGTT--GTAAATCTAACTGC--TCAATAGAAGTATGC--AAACAA- 310
consensus_10094#2 TTTTGT--TTCATATGGTTGGTAAATCTAACTGCGTCAAATAGAAGTATGACAAAACAAA 221
**** * ******** * ***** ****** ************ ******
consensus_10094#0 GTTCGTTACAATTTATCTTTGCCCCTTGTTAAATGGCAAAACGTTTGTAGAGTTTTGAGT 1619
consensus_10094#1 -TTCGTTACA-TTTATCTTTCCCCTTT--TAAATGCCAAAC--TTTGTAGATTTTTGATT 364
consensus_10094#2 GTTCGTTACAATTTATCTTTGCCCCTTGTTAAATGGCAAAACGTTTGNAGAGTTTTGAGT 281
********* ********* *** ** ****** **** **** *** ****** *
consensus_10094#0 TGTAAAAGCATAGTCCCTTCATTCTTTGGGGATAATCAAGATATTTATTATTGTTTGGG- 1678
consensus_10094#1 --TAAAACCATA--CCCTTCATTCTTTGGG-ATAATCAAGATATTAATTATTTTTTGGGG 419
consensus_10094#2 TGTAAAAGCATAGTCCCTTCATTCTTTGGGGATAATCAAGATA----------------- 324
***** **** **************** ************
consensus_10094#0 -------
consensus_10094#1 GAAAAAA 426
consensus_10094#2 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||