These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1358 fasta sequence [GTGCCTTTGAGCTTTCGTTCTCTAGAGTGTCTAGGGTGAATCTTGAGCGAGTGAGCGAGCGATCTCTGTGTTGTGTAGTTTGTGAGCTAGGGTGATGGCTAACACCGGACTTAGCATCCCCATGGTGAATGGTGCCACAATCCACCTCCTCCCTGGTTTCCGGTTCCGTCCAACTGACGATGAGCTAGTCATCAAATACCTCTACCCCCGTGCTTTTCATGTGCCACTGCCCTGTGCGATCATCACCGATGTTGACATCCATCATCACAACCCCTGGGACATCGTCCCAGTGGCGGAGAGGGAGAAAGGGAAGCACTTCTTCACAAGAAAGGAGGTCAAGTACCCTGGTAGCCGCCGTAGCAACCGTGTTGCTGGTAATGGCTTCTGGAGAGCAGCAGGCTCGGAGGTGCCCATCTATTACAAACCAGAAGGTGCTGCTAACGACATGCTAGTTGGGATGAGGCGGACTCTAGTGTTCCACTACGGAAAGTCACGATCTGCAGAGCGCACTGAATGGGCCATGCATGAGTTTCAGCTTGCTGGTGCTGGTCTCCTTCCTCACCCTATGATGAGGCATGCAACCAGCAATGGTTCAGAGCCACCCTGTGGCTGCCTTGAAGCGACAATCGCTAAGAAAAGTGATGGTCTCTCTGCAACTCTTCGTGCCAAGCGTGATTCTGCCCCTCTTATGAGAATCATGGTAGAACCCGATAGCTCATGGGTGATCTGCTGCATCTACAAGAAGAGGCAGCGTGCCCCGCCTGTTGTTATCCCTCCTGTCATTGGCGATGTAGGGGAAGCTATCATCCCTCATGCTATTGGCGATGCAAGGGAAGGCCAACTTCACTTCATTGACTTCCTGGGGCAGCCAGCTCGCAATGATCCATCCTCGCCCCATAGCTGCACCA-TTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA-AGAATAAAAACTGCA-AGTATGGCGCTCCA-TTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG-TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGAAGTGTATCTGTCCTGTTTAATTAGTTTCAAGAAAGCCA-AGCGTGTTTGGGTTCTAGGATGAACAAAGTCGTCCAAGATG-CAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCAATATATATATATTGTCCTA----ATAAAAAAAAAA] [+] EMBL AK107369 [GTGCCTTTGAGCTTTCGTTCTCTAGAGTGTCTAGGGTGAATCTTGAGCGAGTGAGCGAGCGATCTCTGTGTTGTGTAGTTTGTGAGCTAGGGTGATGGCTAACACCGGACTTAGCATCCCCATGGTGAATGGTGCCACAATCCACCTCCTCCCTGGTTTCCGGTTCCGTCCAACTGACGATGAGCTAGTCATCAAATACCTCTACCCCCGTGCTTTTCATGTGCCACTGCCCTGTGCGATCATCACCGATGTTGACATCCATCATCACAACCCCTGGGACATCGTCCCAGTGGCGGAGAGGGAGAAAGGGAAGCACTTCTTCACAAGAAAGGAGGTCAAGTACCCTGGTAGCCGCCGTAGCAACCGTGTTGCTGGTAATGGCTTCTGGAGAGCAGCAGGCTCGGAGGTGCCCATCTATTACAAACCAGAAGGTGCTGCTAACGACATGCTAGTTGGGATGAGGCGGACTCTAGTGTTCCACTACGGAAAGTCACGATCTGCAGAGCGCACTGAATGGGCCATGCATGAGTTTCAGCTTGCTGGTGCTGGTCTCCTTCCTCACCCTATGATGAGGCATGCAACCAGCAATGGTTCAGAGCCACCCTGTGGCTGCCTTGAAGCGACAATCGCTAAGAAAAGTGATGGTCTCTCTGCAACTCTTCGTGCCAAGCGTGATTCTGCCCCTCTTATGAGAATCATGGTAGAACCCGATAGCTCATGGGTGATCTGCTGCATCTACAAGAAGAGGCAGCGTGCCCCGCCTGTTGTTATCCCTCCTGTCATTGGCGATGTAGGGGAAGCTATCATCCCTCATGCTATTGGCGATGCAAGGGAAGGCCAACTTCACTTCATTGACTTCCTGGGGCAGCCAGCTCGCAATGATCCATCCTCGCCCCATAGCTGCACCA TTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA AGAATAAAAACTGCA AGTATGGCGCTCCA TTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGAAGTGTATCTGTCCTGTTTAATTAGTTTCAAGAAAGCCA AGCGTGTTTGGGTTCTAGGATGAACAAAGTCGTCCAAGATG CAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCAATATATATATATTGT ] [+] EMBL AU174438 [ GTTCTCTAGAGTGTCTAGGGTGAATCTTGAGCGAGTGAGCGAGCGATCTCTGTGTTGTGTAGTTTGTGAGCTAGGGTGATGGCTAACACCGGACTTAGCATCCCCATGGTGAATGGTGCCACAATCCACCTCCTCCCTGGTTTCCGGTTCCGTCCAACTGACGATGAGCTAGTCATCAAATACCTCTACCCCCGTGCTTTTCATGTGCCACTGCCCTGTGCGATCATCACCGATGTTGACATCCATCATCACAACCCCTGGGACATCGTCCCAGTGGCGGAGAGGGAGAAAGGGAAGCACTTCTTCACAAGAAAGGAGGTCAAGTACCCTGGTAGCCGCCGTAGCAACCGTGTTGCTGGTAATGGCTTCTGGAGAGCAGCAGGCTCGGAGGTGCCCATCTATTACAAACCAGAAGGTGCTGCTAACGACATGCTAGT ] [+] EMBL BI799958 [ ATCCTCGCCCCATAGCTGCACCACTTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCCGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCCAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCACAGAATTAAAACTGCACAGTATGGTGCTCCACTTCCCTGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGGAGTGTATGTGTCCTGTTTAATTAGTTTCAAGAAAGTCA AGCATGTTTGGGTTCTAGGATGAACCAAGTCATCCCAGATG CCAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCAATATATAT TTGTCCTATTTCATAAAAAAAAAA] [+] EMBL AU174439 [ CCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA AGAATAAAAACTGCA AGTATGGCGCTCCA TTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGAAGTGTATCTGTCCTGTTTAATTAGTTTCAAGAAAGCCA AGCGTGTTTGGGTTCTAGGATGAACAAAGTCGTCCAAGATG CAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCAATATATATATATTGTCCTA AAAAAAAAAAAA] [+] EMBL BI799828 [ CCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCCGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGC AATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA AGAATAAAAACTGCA AGTATGGTGCTCCA TTCCCTGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAG TACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGGAGTGTATGTGTCCTGTTTAATTAGTTTCAAGAAAGTCACAGCATGTTTGGGTTCTAGGATGAACCAAGTCATCCCAGATGCCAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTGTTGCATCTTCCTTTCTTCCA ATATATATGTTGTCCTATTTCATAAAAAAAAAA] [+] EMBL AA751388 [ GTCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCA AGAATAAAAACTGCA AGTATGGCTCTCCA TTCCATGGAAGACCTGCATGCATCCTATATATATNCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAGCTAC ] consensusID : consensus_10102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [AGAGCCAGGCGTGCCCCGCCCTTTTTGTTATCCCTCCCTGGTCCATTTGGCCGATGTTAGGGGGAAAGCTTATCCATCCCCTCATGCTATGCGGATGCAAAGGGAAAGCCAAGTTCACTTTCATTGACTTCCTGGGCAACCAGCTCGCAATGATCCATCCTCGCCCACATAGCTGCACCATTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCAGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCAAGAATATAACACTGCAAGTATGGTGCTCCATTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAGTACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATCAAAGTTTGGAGTGTATGTGTCCTGTTTAAAAAA] [+] EMBL BI799042 [AGAGCCAGGCGTGCCCCGCCCTTTTTGTTATCCCTCCCTGGTCCATTTGGCCGATGTTAGGGGGAAAGCTTATCCATCCCCTCATGCTATGCGGATGCAAAGGGAAAGCCAAGTTCACTTTCATTGACTTCCTGGGCAACCAGCTCGCAATGATCCATCCTCGCCCACATAGCTGCACCATTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCAGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCAAGAATATAACACTGCAAGTATGGTGCTCCATTCCATGGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAGTACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATCAAAGTTTGGAGTGTATGTGTCCTGTTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10102#0 GTGCCTTTGAGCTTTCGTTCTCTAGAGTGTCTAGGGTGAATCTTGAGCGAGTGAGCGAGC 60 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 GATCTCTGTGTTGTGTAGTTTGTGAGCTAGGGTGATGGCTAACACCGGACTTAGCATCCC 120 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 CATGGTGAATGGTGCCACAATCCACCTCCTCCCTGGTTTCCGGTTCCGTCCAACTGACGA 180 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 TGAGCTAGTCATCAAATACCTCTACCCCCGTGCTTTTCATGTGCCACTGCCCTGTGCGAT 240 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 CATCACCGATGTTGACATCCATCATCACAACCCCTGGGACATCGTCCCAGTGGCGGAGAG 300 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 GGAGAAAGGGAAGCACTTCTTCACAAGAAAGGAGGTCAAGTACCCTGGTAGCCGCCGTAG 360 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 CAACCGTGTTGCTGGTAATGGCTTCTGGAGAGCAGCAGGCTCGGAGGTGCCCATCTATTA 420 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 CAAACCAGAAGGTGCTGCTAACGACATGCTAGTTGGGATGAGGCGGACTCTAGTGTTCCA 480 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 CTACGGAAAGTCACGATCTGCAGAGCGCACTGAATGGGCCATGCATGAGTTTCAGCTTGC 540 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 TGGTGCTGGTCTCCTTCCTCACCCTATGATGAGGCATGCAACCAGCAATGGTTCAGAGCC 600 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 ACCCTGTGGCTGCCTTGAAGCGACAATCGCTAAGAAAAGTGATGGTCTCTCTGCAACTCT 660 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 TCGTGCCAAGCGTGATTCTGCCCCTCTTATGAGAATCATGGTAGAACCCGATAGCTCATG 720 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 GGTGATCTGCTGCATCTACAAGAAGAGGCAG-CGTGCCCCGCC--TGTTGTTATCCCTCC 777 consensus_10102#1 -----------------------AGAGCCAGGCGTGCCCCGCCCTTTTTGTTATCCCTCC 37 **** *** *********** * ************* consensus_10102#0 TG---TCATTGG--CGATGT---AGGGGAAGCT-ATCA--TCCCTCATGCTATTGGCGAT 826 consensus_10102#1 CTGGTCCATTTGGCCGATGTTAGGGGGAAAGCTTATCCATCCCCTCATGCTAT-GCGGAT 96 **** * ****** *** ***** *** ************ * *** consensus_10102#0 GCAA-GGGAAGGCCAACTTCACTT-CATTGACTTCCTGGGGCAGCCAGCTCGCAATGATC 884 consensus_10102#1 GCAAAGGGAAAGCCAAGTTCACTTTCATTGACTTCCTGGG-CAACCAGCTCGCAATGATC 155 **** ***** ***** ******* *************** ** **************** consensus_10102#0 CATCCTCGCCC-CATAGCTGCACCATTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAG 943 consensus_10102#1 CATCCTCGCCCACATAGCTGCACCATTGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAG 215 *********** ************************************************ consensus_10102#0 TCTGCCGGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAAATTGATCGAGT 1003 consensus_10102#1 TCTGCCAGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAGCAA-TTGATCGAGT 274 ****** ****************************************** ********** consensus_10102#0 GTGAAGGAAGTGAACTGAGTCTCAAGAATAAAA-ACTGCAAGTATGGCGCTCCATTCCAT 1062 consensus_10102#1 GTGAAGGAAGTGAACTGAGTCTCAAGAATATAACACTGCAAGTATGGTGCTCCATTCCAT 334 ****************************** ** ************* ************ consensus_10102#0 GGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTG 1122 consensus_10102#1 GGAAGACCTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTG 394 ************************************************************ consensus_10102#0 TTGTCTTTAAGTTGGAGTACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATAA 1182 consensus_10102#1 TTGTCTTTAAGTTGGAGTACTCTAAGCTATTCGATCTGGAGATTATGCTGTTTTTAATCA 454 ********************************************************** * consensus_10102#0 AAGTTTGAAGTGTATCTGTCCTGTTTAATTAGTTTCAAGAAAGCCAAGCGTGTTTGGGTT 1242 consensus_10102#1 AAGTTTGGAGTGTATGTGTCCTGTTTAAAAAA---------------------------- 486 ******* ******* ************ * consensus_10102#0 CTAGGATGAACAAAGTCGTCCAAGATGCAAGAAGTTCTAGAGAGGTAGCTACATTTCTGG 1302 consensus_10102#1 ------------------------------------------------------------ consensus_10102#0 AAATTGTTGCATCTTCCTTTCTTCAATATATATATATTGTCCTAATAAAAAAAAAA 1358 consensus_10102#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||