These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence [CTCTCTTTCTCTCCCCTCAACACCGTAGCACTGCTTCTCGCGACCACGCGAAGAGGGAGGAGGAGGCTAGCGACCACGCCGACAGGGGTGGGGGCGGCACGACACGACGGTGGTGGGGTCGTGCATCGCGGCGGCGGTCGCCGTTGGCATCTTGCTCGGCTGCTTGTGCACCTTCCTCTACCCCGATGGGCTCCTCTCCTGCTGCTCCAACGCCGCCCTCCATTGGCCTCGCCAGGTAAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTGGCGCTACAGCAAGAACAGCCGCCGCCGGTGATGGAGGTGGACTCGCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAGACGGAGACGGGTTTATTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTATTGTAGTAAGCTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATTATTTTAGATAATGGAAATGGGTTACATCTCCGGCTTCTGTCCATAGGCACACAACCAAAAAGTCCAGAAGTGAACAGAAAAGAGCTTAAAAAAGGCGAGATGGGACAAATCCCCAACTTTTGCCGATAATATGATCTACTAAATAATATTTTTTAAAATCACGTAGATTCTATCACGAAATTCTGTAGGTACTACGCTATCCAAACTAGAATAAAAGTTCCTTGGCTACGTACCAATTCCAAGCGTGTAGCACCATT] [+] EMBL AK111111 [CTCTCTTTCTCTCCCCTCAACACCGTAGCACTGCTTCTCGCGACCACGCGAAGAGGGAGGAGGAGGCTAGCGACCACGCCGACAGGGGTGGGGGCGGCACGACACGACGGTGGTGGGGTCGTGCATCGCGGCGGCGGTCGCCGTTGGCATCTTGCTCGGCTGCTTGTGCACCTTCCTCTACCCCGATGGGCTCCTCTCCTGCTGCTCCAACGCCGCCCTCCATTGGCCTCGCCAGGTAAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTGGCGCTACAGCAAGAACAGCCGCCGCCGGTGATGGAGGTGGACTCGCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAGACGGAGACGGGTTTATTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTATTGTAGTAAGCTGTTTCACTTTATTTTGATTTGATGTTGCATTG ] [+] EMBL CF324028 [ GCCTCGCCAGGTAAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTGGCGCTACAGCAAGAACAGCCGCCGCCGGTGATGGAGGTGGACTCGCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAGACGGAGACGGGTTTATTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTATTGTAGTAAGCTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATTATTTTAGATAATGGAAATGGGTTACATCTCCGGCTTCTGTCCATAGGCACACAACCAAAAAGTCCAGAAGTGAACAGAAAAGAGCTTAAAAAAGGCGAGATGGGACAAATCCCCAACTTTTGCCGATAATATGATCTACTAAATAATATTTTTTAAAATCACGTAGATTCTATCACGAAATTCTGTAGGTACTACGCTATCCAAACTAGAATAAAAGTTCCTTGGCTACGTACCAATTCCAAGCGTGTAGCACCATT] consensusID : consensus_10111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 658 fasta sequence [TCCCTCATCCACTCGTTCTCTGCCCCTCTCTCTCCTTTCTGTCTCTCACGAAGGACCAAAAGCGGCGCTGCTCGCTGCTCGTCGGCACGGTTGGGCCATAGCTGCCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCGTAGGTTT-GTTTTGTTGGTGTTTT-AGGGATG-TTGCATTCTACTGTTAAGCTCGTTGCACTATGTGTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTATATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCATATGATGTACAATGTGTTTTCTTCGATGTTGCAGAGTAGAGTCCTGATGTTGCGAGTCGTGTTTTTTCATTGTTTCATCTGATTGAAACATTTCTCATCGAGTAATGAAACATTGAAACA] [+] EMBL C74093 [TCCCTCATCCACTCGTTCTCTGCCCCTCTCTCTCCTTTCTGTCTCTCACGAAGGACCAAAAGCGGCGCTGCTCGCTGCTCGTCGGCACGGTTGGGCCATAGCTGCCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCGTAGGTTT GTTTTGTTGGTGTTTT AGGGATG TTGCATTCTACTGTTAAGCTCGTTGCACTATGTGTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTATATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCATATGATGTACAATGTGTTTTCTTCG ] [+] EMBL AK120190 [ TCTCTCACGAAGGACCAAAAGCGGCGCTGCTCGCTGCTCGTCGGCACGGTTGGGCCATAGCTGCCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCGTAGGTTT GTTTTGTTGGTGTTTT AGGGATG TTGCATTCTACTGTTAAGCTCGTTGCACTATGTGTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTATATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCATATGATGTACAATGTGTTTTCTTCGATGTTGCAGAGTAGAGTCCTGATGTTGCGAGTCGTGTTTTTTCATTGTTTCATCTGATTGAAACATTTCTCATCGAGTAATGAAACATTGAAACA] [+] EMBL OSS11203A [ GCGCTGCTCGCTGCTCGTCGGCACGGTTGGGCCATAGCTGCAGTGAGCAGCTAGGCGTCCTCCCCGTGCANCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCNAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCNTAGGTTTNNTTTTGTTGGTGTTTTAAGGGATGTTTGCATTCTACTGTTA ] [+] EMBL AU029439 [ CCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCCGCAGGAACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGTGCGGCATCGACGACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCGCTGAGGACGGTGACGGAGCTCCACGCGGCCGAGCTCCGTGCGGCGCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCGTAGGTTT GTTTTGTTGGTGTTTT AGGGATG TTGCATTCTACTGTTAAGCCCGTTGCACTATGTGTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTATATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCATATGATGTACAATGTGTTTTCTTCGATGTTGCAaaaaa ] consensusID : consensus_10111#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [ACCATGCGAAGAGGGAGGAGGAGTTTAGCGACCACGCCGACGATGGTGGCGCGGCGCGACACGACGGTGGTGGGGTCGCGCATCGCGGCCGCGGTCGCCATCGGCGTCGCGCTCAGTTGTGTGTGAGCCTTCATCTACCCCGACGGGCTCCTCTCCCGCTCCTCCGACACCGCCCTCCATTGGCCTTACTAGGTAAACCGCCTCTGCGCCTATCTCCCCCATCCTCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAGGAACAGCTGCCGCCGCCGCAGTAGATGGCGGCGCCGCCGGTGATGGAGGTGGACTCACCGACGACCGGAGATGAAGAAGATGAAGGTGTGTTTATTTTGTTGAAGAAGATGGAGACGGGTTTGTTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTGTTGCATTAAGGTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATCTATTGTATATGTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCGGATGTTCAACATGATGTACGATGTGTTTTCTTCGATGTTGCAGAATAGAGTCTTGA] [+] EMBL AK100734 [ACCATGCGAAGAGGGAGGAGGAGTTTAGCGACCACGCCGACGATGGTGGCGCGGCGCGACACGACGGTGGTGGGGTCGCGCATCGCGGCCGCGGTCGCCATCGGCGTCGCGCTCAGTTGTGTGTGAGCCTTCATCTACCCCGACGGGCTCCTCTCCCGCTCCTCCGACACCGCCCTCCATTGGCCTTACTAGGTAAACCGCCTCTGCGCCTATCTCCCCCATCCTCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAGGAACAGCTGCCGCCGCCGCAGTAGATGGCGGCGCCGCCGGTGATGGAGGTGGACTCACCGACGACCGGAGATGAAGAAGATGAAGGTGTGTTTATTTTGTTGAAGAAGATGGAGACGGGTTTGTTTAGTTGGAGTTTAGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACTCTGTTGCATTAAGGTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATCTATTGTATATGTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCGGATGTTCAACATGATGTACGATGTGTTTTCTTCGATGTTGCAGAATAGAGTCTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10111#0 CTCTCTTTCTCTCCCCTCAACACCGTAGCACTGCTTCTCGCGACCACGCGAAGAGGGAGG 60 consensus_10111#2 ------------------------------------------ACCATGCGAAGAGGGAGG 18 consensus_10111#1 -----------------------------------TCCCTCATCCACTCGTTCTCTGCCC 25 *** ** * consensus_10111#0 AGGAGGCTAGCGACCA-CGCCGACAGGGG--TGGGGGCGGCACGACACGACGGTGGTGGG 117 consensus_10111#2 AGGAGTTTAGCGACCA-CGCCGACGATGG--TGGCG-CGGCGCGACACGACGGTGGTGGG 74 consensus_10111#1 CTCTCTCTCCTTTCTGTCTCTCACGAAGGACCAAAAGCGGCGCTGCTCGCTGCTCGTCGG 85 * * * * ** ** **** * * ** * * ** ** consensus_10111#0 GTCGTGCATCGCGGCGGCGGTCGCCGTTGGCATCTTGCTCGGCTGCTTGTGCACCTTCCT 177 consensus_10111#2 GTCGCGCATCGCGGCCGCGGTCGCCATCGGCGTCGCGCTCAGTTGTGTGTGAGCCTTCAT 134 consensus_10111#1 CACG---GTTG-GGCCATAGCTGCCGTGAGCAGCTAGGCGTCCTCCCCGTGCGGCTCTCC 141 ** * * *** * *** * ** * * * *** ** consensus_10111#0 CTACCCCGATGGGCTCCTCTCCTGCTGCTCCAACGCCGCCCTCCATTGGCCTCGCCAGGT 237 consensus_10111#2 CTACCCCGACGGGCTCCTCTCCCGCTCCTCCGACACCGCCCTCCATTGGCCTTACTAGGT 194 consensus_10111#1 GCAGGA-ACTCCGCGCGGCGTCGACGATGGCGGCTGCGAGCTCCGT--GCGGCATC-GAC 197 * ** * * * * * * ** **** * ** * consensus_10111#0 AAACCACCTCTGCACCTATCTCCCCCATCCCCGCCGGCGGTGGGCGTAGTG-GCGCTACA 296 consensus_10111#2 AAACCGCCTCTGCGCCTATCTCCCCCATCCTCGGCGGCGGTGGGCGCGGTG-GCGCTGCA 253 consensus_10111#1 GACATGCGGACGCGGCTAAGCTCCACGGCATCGACGACAACGGTCGAGCTCCGTGCGGCG 257 * * ** *** ** * * ** ** * ** ** * * ** * consensus_10111#0 GCAAGAACAGC------------------------CGCCGCCGGTGATGGAGGTGGACTC 332 consensus_10111#2 GCAGGAACAGCTGCCGCCGCCGCAGTAGATGGCGGCGCCGCCGGTGATGGAGGTGGACTC 313 consensus_10111#1 CTGAGGACGGTGAC------------GGAGCTCCACGCGGCCGA-GCTCCGTGCGG---C 301 * ** * *** **** * * * ** * consensus_10111#0 GCCGGCGACCGGAGATGAAGAAGATGGAGGTGGGTTTATTTTGATGAAGA---CGGAG-A 388 consensus_10111#2 ACCGACGACCGGAGATGAAGAAGATGAAGGTGTGTTTATTTTGTTGAAGAAGATGGAG-A 372 consensus_10111#1 GCCGACGAAGGCAGCCAAGCTCCGTGGGGCCGGCGACCATGCGTTGAAGAAGATGGAGCG 361 *** *** * ** * ** * * * * ****** **** consensus_10111#0 CGGGTTTATTTAGTTGGAGTTT-AGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACT 447 consensus_10111#2 CGGGTTTGTTTAGTTGGAGTTT-AGGGATGTTACATCCTACTGTTTTAGCTTGTTGCACT 431 consensus_10111#1 TAGGTTTGTTTTGTTGGTGTTTTAGGGATGTTGCATTCTACTGTTA-AGCTCGTTGCACT 420 ***** *** ***** **** ********* *** ******** **** ******** consensus_10111#0 CTATTGTAGTAAGCTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAAT-TATTTTAG 506 consensus_10111#2 CTGTTGCATTAAGGTGTTTCACTTTATTTTGATTTGATGTTGCATTGCAATCTATTGTAT 491 consensus_10111#1 ATGT-GTATTAAGGTGTTTCATTTTGTTTTGATTTAATGTTGCATTGCAATCTATTGTAT 479 * * * * **** ******* *** ********* *************** **** ** consensus_10111#0 ATAATG-GAAATGGGTTACATCTCCGG-----------CTTCTGTCCATAGGCACACAAC 554 consensus_10111#2 ATGTTT-GTTGCACTCTATTTTATTCG-----------TGTGTTTCATCGGATGTTCAAC 539 consensus_10111#1 ATGTTTTGTTGCACTCTATTTTATTCGTGTGTTTCATCCTTGTTTTATTGGATGTTGCAT 539 ** * * ** * * * * * * * consensus_10111#0 CAAAAAGTCCAGAAGTGAACAGAAAAGAGCTTAAAAAAGGCGAGATGGGACAAATCCCCA 614 consensus_10111#2 -ATGATGTAC-GATGTGTTTTCTTCGATGTTGCAGAATAGAGTCTTGA------------ 585 consensus_10111#1 -ATGATGTAC-AATGTGTTTTCTTCGATGTTGCAGAGTAGAGTCCTGATGTTGCGAGTCG 597 * * ** * * *** * * * * * * ** consensus_10111#0 ACTTTTGCCGATAATATGATCTACTAAATAATATTTTTTAAAATCACGTAG-ATTCTATC 673 consensus_10111#2 ------------------------------------------------------------ consensus_10111#1 TGTTTTTTCATTGTTTCATCTGATTGAAACATTTCTCATCGAGTAATGAAACATTGAAAC 657 consensus_10111#0 ACGAAATTCTGTAGGTACTACGCTATCCAAACTAGAATAAAAGTTCCTTGGCTACGTACC 733 consensus_10111#2 ------------------------------------------------------------ consensus_10111#1 A----------------------------------------------------------- 658 consensus_10111#0 AATTCCAAGCGTGTAGCACCATT 756 consensus_10111#2 ----------------------- consensus_10111#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||