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Oryza sativa
cluster # 10115 cluster # 10115       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10115#0 length = 1969 sequences # 6  
consensus_10115#1 length = 258 sequences # 1  

consensusID : consensus_10115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1969
fasta sequence
                              [ACGTAGCCTACACAACACGAGCCCGAGGACTCTCGTCGANTCACGCGCGCACCCACCCACCCAAAACCCTAGCGCGAGTGGGGAGGGACGAGGGGGTGNTAGTTGTAGTAGCAGCAGCAGTAGAGCTAAGCTAGGGTTTTCCCTCCCCCCGCGCGCGCAGCAGGCGGCATGGAGAGCCTGGTCCTCGCCTCCTCCTGCTCCGCTTCTCCCCGCCTGCCTCCCCTCTCCGCGGCCCGCCGCCGCCGCCCCTCCTCGCAGACTCTCCCGGCGACGGCTGCGGCGTCCGGGCGGAGGGGAGCTGGGAGGTCCAAGCTCGTCGTCGTCGCCGCCGCCGCCGCCGCGGCCCGCGGGTCCGGGAACGGTTTCGAGGGATTAAAGACAAATGGATTTGCAAGCATGTCGTCTTCGACCAACAGTGAGAATATGTCAACTGGAACGGGTTCCCTACCTCCCATGCCACCCCCATCGTCATACATCGGTTCGCCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCCGCAGCATTTTCTATGGTCTCTTCGATGGTAAAGAAATATGCAATGCAACAAGCATTCAAGTCAATGATGACCCAGGCACCGCCAAACACTTTTGGCTCAAACTCGCCTTTCCCATTTGCCATGCCACCACAGGCAGCTCCTGCAGCTCCTAGCAGTTACCCATACTCACAACCAAGGAAAGATACCTCTCCTCAATCTGCAACTGTCGATGTTTCAGCTACTAAAGTGGAAGCAACTGGAACTTTGGAAGAGGCTGATGTGGCTGAACAGCCAAAGAAGAAATTTGCCTTTGTTGACGTTTCTCCTGAAGAGTTGCAGCAAAAGGAACTTCAATCTTCACTGGAGACAGTGGATGTAAAAAGTGAGAGTAAACAGAGTGAAACTATGGAGGATACTGAGCAAAAAGCTCCAACAAATGGAACTGCTTTTAAGATGAATGAAGGTTCTGCTAGCGGGACAACTGAATCTAGCAATTCAGGGCCTATGTTGTCCGTTGATACAATTGAGAAAATGATGGAAGATCCAGCCGTGCAGAAGATGGTTTACCCCTATTTGCCTGAGGAGATGAGGAACCCTGATTCATTCAAGTGGATGCTGCAGAATCCAATGTACCGCCAACAACTACAGGATATGCTAAACAACATGGGTGGATCTCCTGATCAATGGGATAACCGAATGCTCGATCACTTGAAGAATTTTGACCTTAGCAGTCCAGAAGTCAGGCAGCAGTTTGCGCAAGTTGGCATGACTCCAGAGGAGGTAGTATCGAAAATAATGGCAAACCCAGAAGTTGCTGTTGCATTCCAGAACCCAAAGATTCAAACAGCGATCATGGATTGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATCATCTCTTCCAAGTGGCTGCGGTAACATCTGTTGATCGGCTGAGTAAAAGGAAACGAAGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCAGGGTTTTTTGAGTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTGTTAGCATTGCAATGCAAGCGAACAAGTTTACTATCTTCCAAAGCAACTTGGTTGGATTGGTGCTTGTGTTACTCTACATATAATTTGGAGGCTAATAATTCAAGTTCTTGAGGCTACTGA]

[+] EMBL OSC107261            [ACGTAGCCTACACAACACGAGCCCGAGGACTCTCGTCGANTCACGCGCGCACCCACCCACCCAAAACCCTAGCGCGAGTGGGGAGGGACGAGGGGGTGNTAGTTATAGTAGCAGCAGCAGTAGAGCTAAGCTAGGNTTTTCCCTCCCCCCGCGCGCGCA CAGGCGGCATGGAGAGCCTGNTCCTCGCCTCCTCCTNCTCCGCTTCTCCCCGCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK065119             [                                                  ACCCACCCACCCAAAACCCTAGCGCGAGTGGGGAGGGGCGAGGGGGTGGTAGTTGTAGTAGCAGCAGCAGTAGAGCTAAGCTAGGGTTTTCCCTCCCCCCGCGCGCGCAGCAGGCGGCATGGAGAGCCTGGTCCTCGCCTCCTCCTGCTCCGCTTCTCCCCGCCTGCCTCCCCTCTCCGCGGCCCGCCGCCGCCGCCCCTCCTCGCAGACTCTCCCGGCGACGGCTGCGGCGTCCGGGCGGAGGGGAGCTGGGAGGTCCAAGCTCGTCGTCGTCGCCGCCGCCGCCGCCGCGGCCCGCGGGTCCGGGAACGGTTTCGAGGGATTAAAGACAAATGGATTTGCAAGCATGTCGTCTTCGACCAACAGTGAGAATATGTCAACTGGAACGGGTTCCCTACCTCCCATGCCACCCCCATCGTCATACATCGGTTCGCCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCCGCAGCATTTTCTATGGTCTCTTCGATGGTAAAGAAATATGCAATGCAACAAGCATTCAAGTCAATGATGACCCAGGCACCGCCAAACACTTTTGGCTCAAACTCGCCTTTCCCATTTGCCATGCCACCACAGGCAGCTCCTGCAGCTCCTAGCAGTTACCCATACTCACAACCAAGGAAAGATACCTCTCCTCAATCTGCAACTGTCGATGTTTCAGCTACTAAAGTGGAAGCAACTGGAACTTTGGAAGAGGCTGACGTGGCTGAACAGCCAAAGAAGAAATTTGCCTTTGTTGACGTTTCTCCTGAAGAGTTGCAGCAAAAGGAACTTCAATCTTCACTGGAGACAGTGGATGTAAAAAGTGAGAGTAAACAGAGTGAAACTATGGAGGATACTGAGCAAAAAGCTCCAACAAATGGAACTGCTTTTAAGATGAATGAAGGTTCTGCTAGCGGGACAACTGAATCTAGCAATTCAGGGCCTATGTTGTCCGTTGATACAATTGAGAAAGTGATGGAAGATCCAGCCGTGCAGAAGATGGTTTACCCCTATTTGCCTGAGGAGATGAGGAACCCTGATTCATTCAAGTGGATGCTGCAGAATCCAATGTACCGCCAACAACTACAGGATATGCTAAACAACATGGGTGGATCTCCTGATCAATGGGATAACCGAATGCTCGATCACTTGAAGAATTTTGACCTTAGCAGTCCAGAAGTCAGGCAGCAGTTTGCGCAAGTTGGCATGACTCCAGAGGAGGTAGTATCGAAAATAATGGCAAACCCAGAAGTTGCTGTTGCATTCCAGAACCCAAAGATTCAAACAGCGATCATGGATTGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATCATCTCTTCCAAGTGGCTGCGGTAACATCTGTTGATCGGCTGAGTAAAAGGAAACGAAGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCAGGGTTTTTTGAGTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTGTTAGCATTGCAATGCAAGCGAACAAGTTTACTATCTTCCAAAGCAACTTGGTTGGATTGGTGCTTGTGTTACTCTACATATAATTTGGAGGCTAATAATTCAAGTTCTTGAGGCTACTGA]
[+] EMBL AK062578             [                                                                                                        GTAGTAGCAGCAGCAGTAGAGCTAAGCTAGGGTTTTCCCTCCCCCCGCGCGCGCAGCAGGCGGCATGGAGAGCCTGGTCCTCGCCTCCTCCTGCTCCGCTTCTCCCCGCCTGCCTCCCCTCTCCGCGGCCCGCCGCCGCCGCCCCTCCTCGCAGACTCTCCCGGCGACGGCTGCGGCGTCCGGGCGGAGGGGAGCTGGGAGGTCCAAGCTCGTCGTCGTCGCCGCCGCCGCCGCCGCGGCCCGCGGGTCCGGGAACGGTTTCGAGGGATTAAAGACAAATGGATTTGCAAGCATGTCGTCTTCGACCAACAGTGAGAATATGTCAACTGGAACGGGTTCCCTACCTCCCATGCCACCCCCATCGTCATACATCGGTTCGCCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCCGCAGCATTTTCTATGGTCTCTCCGATGGTAAAGAAATATGCAATGCAACAAGCATTCAAGTCAATGATGACCCAGGCACCGCCAAACACTTTTGGCTCAAACTCGCCTTTCCCATTTGCCATGCCACCACAGGCAGCTCCTGCAGCTCCTAGCAGTTACCCATACTCACAACCAAGGAAAGATACCTCTCCTCAATCTGCAACTGTCGATGTTTCAGCTACTAAAGTGGAAGCAACTGGAACTTTGGAAGAGGCTGATGTGGCTGAACAGCCAAAGAAGAAATTTGCCTTTGTTGACGTTTCTCCTGAAGAGTTGCAGCAAAAGGAACTTCAATCTTCACTGGAGACAGTGGATGTAAAAAGTGAGAGTAAACAGAGTGAAACTATGGAGGATACTGAGCAAAAAGCTCCAACAAATGGAACTGCTTTTAAGATGAATGAAGGTTCTGCTAGCGGGACAACTGAATCTAGCAATTCAGGGCCTATGTTGTCCGTTGATACAATTGAGAAAATGATGGAAGATCCAGCCGTGCAGAAGATGGTTTACCCCTATTTGCCTGAGGAGATGAGGAACCCTGATTCATTCAAGTGGATGCTGCAGAATCCAATGTACCGCCAACAACTACAGGATATGCTAAACAACATGGGTGGATCTCCTGATCAATGGGATAACCGAATGCTCGATCACTTGAAGAATTTTGACCTTAGCAGTCCAGAAGTCAGGCAGCAGTTTGCGCAAGTTGGCATGACTCCAGAGGAGGTAGTATCGAAAATAATGGCAAACCCAGAAGTTGCTGTTGCATTCCAGAACCCAAAGATTCAAACAGCGATCATGGATTGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATCATCTCTTCCAAGTGGCTGCGGTAACATCTGTTGATCGGCTGAGTAAAAGGAAACGAAGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCAGGGTTTTTTGAGTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTG                                                                                                                        ]
[+] EMBL AK098870             [                                                                                                                                            CCCTCCCCCCGCGCGCGCAGCAGGCGGCATGGAGAGCCTGGTCCTCGCCTCCTCCTGCTCCGCTTCTCCCCGCCTGCCTCCCCTCTCCGCGGCCCGCCGCCGCCGCCCCTCCTCGCAGACTCTCCCGGCGACGGCTGCGGCGTCCGGGCGGAGGGGAGCTGGGAGGTCCAAGCTCGTCGTCGTCGCCGCCGCCGCCGCCGCGGCCCGCGGGTCCGGGAACGGTTTCGAGGGATTAAAGACAAATGGATTTGCAAGCATGTCGTCTTCGACCAACAGTGAGAATATGTCAACTGGAACGGGTTCCCTACCTCCCATGCCACCCCCATCGTCATACATCGGTTCGCCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCCGCAGCATTTTCTATGGTCTCTTCGATGGTAAAGAAATATGCAATGCAACAAGCATTCAAGTCAATGATGACCCAGGCACCGCCAAACACTTTTGGCTCAAACTCGCCTTTCCCATTTGCCATGCCACCACAGGCAGCTCCTGCAGCTCCTAGCAGTTACCCATACTCACAACCAAGGAAAGATACCTCTCCTCAATCTGCAACTGTCGATGTTTCAGCTACTAAAGTGGAAGCAACTGGAACTTTGGAAGAGGCTGATGTGGCTGAACAGCCAAAGAAGAAATTTGCCTTTGTTGACGTTTCTCCTGAAGAGTTGCAGCAAAAGGAACTTCAATCTTCACTGGAGACAGTGGATGTAAAAAGTGAGAGTAAACAGAGTGAAACTATGGAGGATACTGAGCAAAAAGCTCCAACAAATGGAACTGCTTTTAAGATGAATGAAGGTTCTGCTAGCGGGACAACTGAATCTAGCAATTCAGGGCCTATGTTGTCCGTTGATACAATTGAGAAAATGATGGAAGATCCAGCCGTGCAGAAGATGGTTTACCCCTATTTGCCTGAGGAGATGAGGAACCCTGATTCATTCAAGTGGATGCTGCAGAATCCAATGTACCGCCAACAACTACAGGATATGCTAAACAACATGGGTGGATCTCCTGATCAATGGGATAACCGAATGCTCGATCACTTGAAGAATTTTGACCTTAGCAGTCCAGAAGTCAGGCAGCAGTTTGCGCAAGTTGGCATGACTCCAGAGGAGGTAGTATCGAAAATAATGGCAAACCCAGAAGTTGCTGTTGCATTCCAGAACCCAAAGATTCAAACAGCGATCATGGATTGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATCATCTCTTCCAAGTGGCTGCGGTAACATCTGTTGATCGGCTGAGTAAAAGGAAACGAAGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCAGGGTTTTTTGAGTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTG                                                                                                                        ]
[-] EMBL CB632195             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGATCCAGCCGTGCAGAAGATGGTTTACCCCTATTTGCCTGAGGAGATGAGGAACCCTGATTCATTCAAGTGGATGCTGCAGAATCCAATGTACCGCCAACAACTACAGGATATGCTAAACAACATGGGTGGATCTCCTGATCAATGGGATAACCGAATGCTCGATCACTTGAAGAATTTTGACCTTAGCAGTCCAGAAGTCAGGCAGCAGTTTGCGCAAGTTGGCATGACTCCAGAGGAGGTAGTATCGAAAATAATGGCAAACCCAGAAGTTGCTGTTGCATTCCAGAACCCAAAGATTCAAACAGCGATCATGGATTGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATCATCTCTTCCAAGTGGCTGCGGTAACATCTGTTGATCGGCTGAGTAAAAGGAAACGAAGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCAGGGTTTTTTGAGTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTGGTGAAGATGCAGAGATA                                                                                                                                                                     ]
[+] EMBL AU166298             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATCATCTCTTCCAAGTGGCTGCGGTAACATCTGTTGATCGGCTGAGTAAAAGGAAACGAAGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCAGGGTTTTTTGAGTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATAaaaaaa                                                                                                                        ]


>consensus_10115#0 ACGTAGCCTACACAACACGAGCCCGAGGACTCTCGTCGANTCACGCGCGCACCCACCCAC CCAAAACCCTAGCGCGAGTGGGGAGGGACGAGGGGGTGNTAGTTGTAGTAGCAGCAGCAG TAGAGCTAAGCTAGGGTTTTCCCTCCCCCCGCGCGCGCAGCAGGCGGCATGGAGAGCCTG GTCCTCGCCTCCTCCTGCTCCGCTTCTCCCCGCCTGCCTCCCCTCTCCGCGGCCCGCCGC CGCCGCCCCTCCTCGCAGACTCTCCCGGCGACGGCTGCGGCGTCCGGGCGGAGGGGAGCT GGGAGGTCCAAGCTCGTCGTCGTCGCCGCCGCCGCCGCCGCGGCCCGCGGGTCCGGGAAC GGTTTCGAGGGATTAAAGACAAATGGATTTGCAAGCATGTCGTCTTCGACCAACAGTGAG AATATGTCAACTGGAACGGGTTCCCTACCTCCCATGCCACCCCCATCGTCATACATCGGT TCGCCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCCGCAGCATTTTCTATGGTCTCT TCGATGGTAAAGAAATATGCAATGCAACAAGCATTCAAGTCAATGATGACCCAGGCACCG CCAAACACTTTTGGCTCAAACTCGCCTTTCCCATTTGCCATGCCACCACAGGCAGCTCCT GCAGCTCCTAGCAGTTACCCATACTCACAACCAAGGAAAGATACCTCTCCTCAATCTGCA ACTGTCGATGTTTCAGCTACTAAAGTGGAAGCAACTGGAACTTTGGAAGAGGCTGATGTG GCTGAACAGCCAAAGAAGAAATTTGCCTTTGTTGACGTTTCTCCTGAAGAGTTGCAGCAA AAGGAACTTCAATCTTCACTGGAGACAGTGGATGTAAAAAGTGAGAGTAAACAGAGTGAA ACTATGGAGGATACTGAGCAAAAAGCTCCAACAAATGGAACTGCTTTTAAGATGAATGAA GGTTCTGCTAGCGGGACAACTGAATCTAGCAATTCAGGGCCTATGTTGTCCGTTGATACA ATTGAGAAAATGATGGAAGATCCAGCCGTGCAGAAGATGGTTTACCCCTATTTGCCTGAG GAGATGAGGAACCCTGATTCATTCAAGTGGATGCTGCAGAATCCAATGTACCGCCAACAA CTACAGGATATGCTAAACAACATGGGTGGATCTCCTGATCAATGGGATAACCGAATGCTC GATCACTTGAAGAATTTTGACCTTAGCAGTCCAGAAGTCAGGCAGCAGTTTGCGCAAGTT GGCATGACTCCAGAGGAGGTAGTATCGAAAATAATGGCAAACCCAGAAGTTGCTGTTGCA TTCCAGAACCCAAAGATTCAAACAGCGATCATGGATTGCTCACAAAACCCGCTCAATATT GTAAAATACCAGAACGACAAAGAGGTCATGGATGTTTTTATGAAGATATCACAAATCTTC CCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCC TATCATCTCTTCCAAGTGGCTGCGGTAACATCTGTTGATCGGCTGAGTAAAAGGAAACGA AGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCAGGGTTTTTTGA GTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAG CCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGT ACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGA GATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTGTTAGCATTGCA ATGCAAGCGAACAAGTTTACTATCTTCCAAAGCAACTTGGTTGGATTGGTGCTTGTGTTA CTCTACATATAATTTGGAGGCTAATAATTCAAGTTCTTGAGGCTACTGA



consensusID : consensus_10115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence
                              [AGATGAACTTCGTTTCCTTTTACTCAGCCGATCAACAGATGTTACCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTGTTAGCAT]

[+] EMBL AU164143             [AGATGAACTTCGTTTCCTTTTACTCAGCCGATCAACAGATGTTACCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTGTTAGCAT]


>consensus_10115#1 AGATGAACTTCGTTTCCTTTTACTCAGCCGATCAACAGATGTTACCGCCTAGTGTTTGGT TTGGTAGTGACCCTGCCTCAAGCCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTT ATTTACATCCCCGCGCCCCCGTACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTG TGGTAGGTTGTGAAGATGCAGAGATAGTTCATATCACCTCAATTTTGATAATATTATGTA TTATATCTGTGTTAGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10115#0      ACGTAGCCTACACAACACGAGCCCGAGGACTCTCGTCGANTCACGCGCGCACCCACCCAC 60
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      CCAAAACCCTAGCGCGAGTGGGGAGGGACGAGGGGGTGNTAGTTGTAGTAGCAGCAGCAG 120
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      TAGAGCTAAGCTAGGGTTTTCCCTCCCCCCGCGCGCGCAGCAGGCGGCATGGAGAGCCTG 180
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GTCCTCGCCTCCTCCTGCTCCGCTTCTCCCCGCCTGCCTCCCCTCTCCGCGGCCCGCCGC 240
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      CGCCGCCCCTCCTCGCAGACTCTCCCGGCGACGGCTGCGGCGTCCGGGCGGAGGGGAGCT 300
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GGGAGGTCCAAGCTCGTCGTCGTCGCCGCCGCCGCCGCCGCGGCCCGCGGGTCCGGGAAC 360
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GGTTTCGAGGGATTAAAGACAAATGGATTTGCAAGCATGTCGTCTTCGACCAACAGTGAG 420
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      AATATGTCAACTGGAACGGGTTCCCTACCTCCCATGCCACCCCCATCGTCATACATCGGT 480
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      TCGCCTGTTTTCTGGATTGGAGTTGGTGTAGCATTGTCCGCAGCATTTTCTATGGTCTCT 540
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      TCGATGGTAAAGAAATATGCAATGCAACAAGCATTCAAGTCAATGATGACCCAGGCACCG 600
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      CCAAACACTTTTGGCTCAAACTCGCCTTTCCCATTTGCCATGCCACCACAGGCAGCTCCT 660
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GCAGCTCCTAGCAGTTACCCATACTCACAACCAAGGAAAGATACCTCTCCTCAATCTGCA 720
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      ACTGTCGATGTTTCAGCTACTAAAGTGGAAGCAACTGGAACTTTGGAAGAGGCTGATGTG 780
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GCTGAACAGCCAAAGAAGAAATTTGCCTTTGTTGACGTTTCTCCTGAAGAGTTGCAGCAA 840
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      AAGGAACTTCAATCTTCACTGGAGACAGTGGATGTAAAAAGTGAGAGTAAACAGAGTGAA 900
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      ACTATGGAGGATACTGAGCAAAAAGCTCCAACAAATGGAACTGCTTTTAAGATGAATGAA 960
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GGTTCTGCTAGCGGGACAACTGAATCTAGCAATTCAGGGCCTATGTTGTCCGTTGATACA 1020
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      ATTGAGAAAATGATGGAAGATCCAGCCGTGCAGAAGATGGTTTACCCCTATTTGCCTGAG 1080
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GAGATGAGGAACCCTGATTCATTCAAGTGGATGCTGCAGAATCCAATGTACCGCCAACAA 1140
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      CTACAGGATATGCTAAACAACATGGGTGGATCTCCTGATCAATGGGATAACCGAATGCTC 1200
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GATCACTTGAAGAATTTTGACCTTAGCAGTCCAGAAGTCAGGCAGCAGTTTGCGCAAGTT 1260
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GGCATGACTCCAGAGGAGGTAGTATCGAAAATAATGGCAAACCCAGAAGTTGCTGTTGCA 1320
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      TTCCAGAACCCAAAGATTCAAACAGCGATCATGGATTGCTCACAAAACCCGCTCAATATT 1380
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GTAAAATACCAGAACGACAAAGAGGTCATGGATGTTTTTATGAAGATATCACAAATCTTC 1440
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      CCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCC 1500
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      TATCATCTCTTCCAAGTGGCTGCGGTAACATCTGTTGATCGGCTGAGTAAAAGGAAACGA 1560
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      AGTTCATCTGTTCAGTCATTACGGACAAGATGTAAAAGCTTTCCTGTCAGGGTTTTTTGA 1620
consensus_10115#1      ------------------------------------AGATGAACT-TCGTTTCCTTTTAC 23
                                                           ** *   ** **      ****  

consensus_10115#0      GTTGCCAATGTACATCATCATATCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAG 1680
consensus_10115#1      TCAGCCGATCAACAG-ATGTTACCGCCTAGTGTTTGGTTTGGTAGTGACCCTGCCTCAAG 82
                          *** **  ***  **  ** *************************************

consensus_10115#0      CCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGT 1740
consensus_10115#1      CCAGAGCAGGCAACGAAGCGAAGTTAAGGATTTTTTTTATTTACATCCCCGCGCCCCCGT 142
                       ************************************************************

consensus_10115#0      ACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGA 1800
consensus_10115#1      ACAACTGTGTAGCTTGTGCTTTGACGTTACGAGGTTTGTGGTAGGTTGTGAAGATGCAGA 202
                       ************************************************************

consensus_10115#0      GATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTGTTAGCATTGCA 1860
consensus_10115#1      GATAGTTCATATCACCTCAATTTTGATAATATTATGTATTATATCTGTGTTAGCAT---- 258
                       ********************************************************    

consensus_10115#0      ATGCAAGCGAACAAGTTTACTATCTTCCAAAGCAACTTGGTTGGATTGGTGCTTGTGTTA 1920
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      CTCTACATATAATTTGGAGGCTAATAATTCAAGTTCTTGAGGCTACTGA 1969
consensus_10115#1      -------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)