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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1919 fasta sequence
[CCACCCACCCCAACCGACCAAAGCTCGCCCCTTTGCCCTCGGTCATGAGCCTCGCCGCCGAGTCGCCGTCGCCGTCCTCCCCGTCGTCGTCGAGCGGCAGCGACGACTTCGCGGCGCTCCTCGACGCGGAGCTCGAGCTGACCTCCGCCGCCGACTCGGCCTCCGCCGGAGACCCCTCCGCCGCCACCGACGACGACGACGAAGGTGGTGACGAGGAGGAGGAGGATGTGGTGGTGGTCGTGGAACAAGAGGACGCCATCGTAGAGCAGAGCAGTACCAAACGGCGTAGAGTGGAGGACCAACACCGTCATCAAGCAGTAGTAATGAAGTCAGATGAGGATACCGTTGGTTCTTCTAAAGATGTTAAAATTGATGAATGCCCACCACATCCTGGGTTTTTTGGTGGACTTTGCTATAGATGTGGGAAAAGACAAGATGAGGAAGATGTTCCAGGAGTTGCTTTTGGTTACATCCATAAGGGTTTGAGGCTAGGTACAACAGAAATTGACAGACTGCGTGGAGCTGATTTAAAGAATTTATTGCGAGAAAGAAAACTAGTACTCATTTTGGACTTGGATCATACACTGATCAACTCAACCAAACTCTTTGATC-TTTCTGCTGCTGAAAACGAATTGGGAATTCAATCTGCTGCTAAAGAAGTTGTTCCGGACAGAAGCTTGTTCACATTGGAGACAATGCAGATGCTTACAAAGTTGAGACCATTTGTCCGTAGATTTTTAAAAGAAGCAAGTGATATGTTTGAGATGTATATATACACTATGGGTGACAAGGCTTATGCAATTGAAATAGCAAAACTTCTTGACCCTGATAATGTATATTTTGGCTCAAAGGTGATTTCGAACTCTGATTGCACTCAGCGACACCAGAAAGGTCTTGATGTGGTTCTTGGAGATGAAAGTGTTGCAGTGATTCTTGATGACACTGAGTATGTGTGGCAGAAACATAAAGAAAATCTGATTCTAATGGAGAGATATCATTATTTTGCTTCTAGTTGTCGCCAATTTGGTTTTGGTGCCAGATCTTTGTCAGAGACAATGCAGGACGAAAGGGAGAATGATGGTGCTTTAGCTACAATTTTAGATGTCTTGGAGCGCATACACACAATTTTCTTTGATCCGGATGATCAAAAACCTCTTTCTTCACGGGATGTAAGACAGGTGATCAAGAGGGTACGGCAGGAAGTACTTCAAGGCTGCAAACTAGTGTTTACGCGTGTATTCCCGTTACATCAGCGCCAACAAGATCAGATGATCTGGAAGATGGCCGAGCAGTTGGGTGCCGTTTGCTGCACAGATGTGGATTCTACGGTCACCCATGTTGTTGCTTTGGATCTAGGAACGGAGAAGGCTCGCTGGGCTGTTAGTAACAAGAAGTTTTTGGTCCACCCCCGCTGGATTGAGGCCGCAAATTTCCGATGGCAACGGCAACAAGAGGAGGATTTTCCTGTAGCTCGACCAAAGGAGAAGGGTAAAGAAAATGCCGCTGATGCTCCTATCTCAAAGGAGAACGGTGA-CAAAAATG-CCGCTGA-T-GCTGCTAACG-CAAAGAAGGGTAACGAAAATGTCGCTGATGCTGGTAG-CACAAAGGAGGGGAGTAAAGAAAATGCTGATGATGCTGCTAACT-CAGAGGAGGAGTAAAGAAAATGCTGATGAT-GCTGCTAACGCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTGCAACTGGCTCGTAACCAGCTTATACCTTTTGTAAACCGTTGCGGACATTGCTGTAGCTGCGAACCTACATTAGGATACGTACTCTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGACTGTGCGGATGATGGTGTTATGGTACATGTGAGATTTTTCCTACTGATCTGGGCCTCCAGCCATATACTTTAGTTGACAAAAA]
[+] EMBL AK067160 [CCACCCACCCCAACCGACCAAAGCTCGCCCCTTTGCCCTCGGTCATGAGCCTCGCCGCCGAGTCGCCGTCGCCGTCCTCCCCGTCGTCGTCGAGCGGCAGCGACGACTTCGCGGCGCTCCTCGACGCGGAGCTCGAGCTGACCTCCGCCGCCGACTCGGCCTCCGCCGGAGACCCCTCCGCCGCCACCGACGACGACGACGAAGGTGGTGACGAGGAGGAGGAGGATGTGGTGGTGGTCGTGGAACAAGAGGACGCCATCGTAGAGCAGAGCAGTACCAAACGGCGTAGAGTGGAGGACCAACACCGTCATCAAGCAGTAGTAATGAAGTCAGATGAGGATACCGTTGGTTCTTCTAAAGATGTTAAAATTGATGAATGCCCACCACATCCTGGGTTTTTTGGTGGACTTTGCTATAGATGTGGGAAAAGACAAGATGAGGAAGATGTTCCAGGAGTTGCTTTTGGTTACATCCATAAGGGTTTGAGGCTAGGTACAACAGAAATTGACAGACTGCGTGGAGCTGATTTAAAGAATTTATTGCGAGAAAGAAAACTAGTACTCATTTTGGACTTGGATCATACACTGATCAACTCAACCAAACTCTTTGATC TTTCTGCTGCTGAAAACGAATTGGGAATTCAATCTGCTGCTAAAGAAGTTGTTCCGGACAGAAGCTTGTTCACATTGGAGACAATGCAGATGCTTACAAAGTTGAGACCATTTGTCCGTAGATTTTTAAAAGAAGCAAGTGATATGTTTGAGATGTATATATACACTATGGGTGACAAGGCTTATGCAATTGAAATAGCAAAACTTCTTGACCCTGATAATGTATATTTTGGCTCAAAGGTGATTTCGAACTCTGATTGCACTCAGCGACACCAGAAAGGTCTTGATGTGGTTCTTGGAGATGAAAGTGTTGCAGTGATTCTTGATGACACTGAGTATGTGTGGCAGAAACATAAAGAAAATCTGATTCTAATGGAGAGATATCATTATTTTGCTTCTAGTTGTCGCCAATTTGGTTTTGGTGCCAGATCTTTGTCAGAGACAATGCAGGACGAAAGGGAGAATGATGGTGCTTTAGCTACAATTTTAGATGTCTTGGAGCGCATACACACAATTTTCTTTGATCCGGATGATCAAAAACCTCTTTCTTCACGGGATGTAAGACAGGTGATCAAGAGGGTACGGCAGGAAGTACTTCAAGGCTGCAAACTAGTGTTTACGCGTGTATTCCCGTTACATCAGCGCCAACAAGATCAGATGATCTGGAAGATGGCCGAGCAGTTGGGTGCCGTTTGCTGCACAGATGTGGATTCTACGGTCACCCATGTTGTTGCTTTGGATCTAGGAACGGAGAAGGCTCGCTGGGCTGTTAGTAACAAGAAGTTTTTGGTCCACCCCCGCTGGATTGAGGCCGCAAATTTCCGATGGCAACGGCAACAAGAGGAGGATTTTCCTGTAGCTCGACCAAAGGAGAAGGGTAAAGAAAATGCCGCTGATGCTCCTATCTCAAAGGAGAACGGTGA CAAAAATG CCGCTGA T GCTGCTAACG CAAAGAAGGGTAACGAAAATGTCGCTGATGCTGGTAG CACAAAGGAGGGGAGTAAAGAAAATGCTGATGATGCTGCTAACT CAGAGGAGGAGTAAAGAAAATGCTGATGAT GCTGCTAACGCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTGCAACTGGCTCGTAACCAGCTTATACCTTTTGTAAACCGTTGCGGACATTGCTGTAGCTGCGAACCTACATTAGGATACGTACTCTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGACTGTGCGGATGATGGTGTTATGGTACATGTGAGAT ]
[+] EMBL CA754656 [ GCCCTCGGTCATGAGCCTCGCCGCCGAGTCGCCGTCGCCGTCCTCCCCGTCGTCGTCGAGCGGCAGCGACGACTTCGCGGCGCTCCTCGACGCGGAGCTCGAGCTGACCTCCGCCGCCGACTCGGCCTCCGCCGGAGACCCCTCCGCCGCCACCGACGACGACGACNAAGGTGGTGACGAGGAGGAGGAGGATGTGGTGGTGGTCGTGGAACAAGAGGACGCCATCGTAGAGCAGAGCAGTACCAAACGGCGTAGAGTGGAGGACCAACACCGTCATCAAGCAGTAGTAATGAAGTCAGATGAGGATACCGTTGGCTCTTCTAAAGATGTTAAAATTGATGAATGCCCACCACATCCTGCGTTTTTTGGTGGACTTTGCTATAGATGTGGGAAAAGACAAGATGAGGAAGATGTTCCAGGAGTTGCTTTTGGCTACATCCATAAGGGTTTGAGGGTAGGTACAACAGAATTTGACAGACTGCGTGGAGGTGATTTAAAGAA TTATTGGGAGAAAGAAAACTAGTACTCATTTTGGACTTGGATCATACCCTGATCAACTCAACC AACTCTTTGAACTTTTCTGCTGGTG AAACGGATTGGGAATTCCATCTGGTGCgt ]
[+] EMBL AU173888 [ GAATGCCCACCACATCCTGGGTTTTTTGGTGGACTTTGCTATAGATGTGGGAAAAGACAAGATGAGGAAGATGTTCCAGGAGTTGCTTTTGGTTACATCCATAAGGGTTTGAGGCTAGGTACAACAGAAATTGACAGACTGCGTGGAGCTGATTTAAAGAATTTATTGCGAGAAAGAAAACTAGTACTCATTTTGGACTTGGATCATACACTGATCAACTCAACCAAACTCTTTGATC TTTCTGCTGCTGAAAACGAATTGGGAATTCAATCTGCTGCTAAAGAAGTTGTTCCGGACAGAAGCTTGTTCACATTGGAGACAATGCAGATGCTTACAAAGTTGAGACCATTTGTCCGTAGATTTTTAAAAGAAGCAAGTGATATGTTTGAGATGTATATATACACTATGGGTGACAAGGCTTATGCAATTGAAATAGCAAAACTTCTTGACCCTGATAATGTATATTTTGGC ]
[+] EMBL AU056814 [ GAATGCCCACCACATCCTGGGTTTTTTGGTGGACTTTGCTATAGATGTGGGAAAAGACAAGATGAGGAAGATGTTCCAGGAGTTGCTTTTGGTTACATCCATAAGGGTTTGAGGCTAGGTACAACAGAAATTGACAGACTGCGTGGAGCTGATTTAAAGAATTTATTGCGAGAAAGAAAACTAGTACTCATTTTGGACTTGGATCATACACTGATCAACTCAACCAAACTCTTTGATC TTTCTGCTGCTGAAAACGAATTGGGAATTCAATCTGCTGCTAAAGAAGTTGTTCCGGACAGAAGCTTGTTCACATTGGAGACAATGCAGATGCTTACAAAGTTGAGACCATTTGTCCGTAGATTTTTAAAAGAAGCAAGTGATATGTTTGAGATGTATATATACACTATGGGTGACAAGGCTTATGCAATTGAAATAG ]
[+] EMBL AU056815 [ GTAGCTCGACCAAAGGAGAAGGGTAAAGAAAATGCCGCTGATGCTCCTATCTCAAAGGAGAACGGTGA CAAAAATG CCGCTGA TGGCTG TAACG CAAAGAAGGGTAACGAAAATGTCGCTGATGCTGGTAG CACAAAGGAGGGGAGTAAAGAAAATGCTGATGATGCTGCTAACT CAGAGGAGGAGTAAAGAAAATGCTGATGATNGCTG TAACGCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTGCAACTGGCTCGTAACCAGCTTATACCTTTTGTAAACCGTTGCGGACATTGCTGTAGCTGCGAACCTACATTAGGATACGTACTCTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGACTGTGCGGATGATGGTGTTATGGTACATGTGAGATTTTTCCTACTGATCTGGGCCTCCAGCCATATACTTTAGTTGACAAAAA]
[+] EMBL AU056358 [ AAGAAAATCCCGCTGATGNTCCTATCTCAAAGGAGANCGGTGACCAAAAATGCCCNCTGATT GCCTNTAACGCCAAAGAAGGGTAACGAAAATNTCGCTGATGCTGGTAGCCACAAAGGAGGGGANTAAAGAAAATGCTGATGATGCTGCTAACTCCAGAGGAGGAGTAAAGAAAATGCTGATGAT GCNGNTAACGCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTGCAACTGGCTCGTAACCAGCTTATACCTTTTGTAAACCGTTGCGGACATTGCTNTAGCTGCGAACCTACATTAGGATACGTACTCTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGACTGTGCGGATGATGGTGTTATGGTACATGTGAGATTTTTCCTACTGATCTGGGCCTCCAGCCATATACTTTAGTTGACAAAAA]
consensusID : consensus_10134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[CTGATGATGCTGCTAACGCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTGCAACTGGCTCGTAACCAGCTTATACCTTTTGTAAACCGTTGCGGACATTGCTGTAGCTGCGAACCTACATTAGGATACGTACTCTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAGGAAAAAAAAAAAGGCCC]
[+] EMBL CF320708 [CTGATGATGCTGCTAACGCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTGCAACTGGCTCGTAACCAGCTTATACCTTTTGTAAACCGTTGCGGACATTGCTGTAGCTGCGAACCTACATTAGGATACGTACTCTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAGGAAAAAAAAAAAGGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10134#0 CCACCCACCCCAACCGACCAAAGCTCGCCCCTTTGCCCTCGGTCATGAGCCTCGCCGCCG 60
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 AGTCGCCGTCGCCGTCCTCCCCGTCGTCGTCGAGCGGCAGCGACGACTTCGCGGCGCTCC 120
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 TCGACGCGGAGCTCGAGCTGACCTCCGCCGCCGACTCGGCCTCCGCCGGAGACCCCTCCG 180
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 CCGCCACCGACGACGACGACGAAGGTGGTGACGAGGAGGAGGAGGATGTGGTGGTGGTCG 240
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 TGGAACAAGAGGACGCCATCGTAGAGCAGAGCAGTACCAAACGGCGTAGAGTGGAGGACC 300
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 AACACCGTCATCAAGCAGTAGTAATGAAGTCAGATGAGGATACCGTTGGTTCTTCTAAAG 360
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 ATGTTAAAATTGATGAATGCCCACCACATCCTGGGTTTTTTGGTGGACTTTGCTATAGAT 420
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 GTGGGAAAAGACAAGATGAGGAAGATGTTCCAGGAGTTGCTTTTGGTTACATCCATAAGG 480
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 GTTTGAGGCTAGGTACAACAGAAATTGACAGACTGCGTGGAGCTGATTTAAAGAATTTAT 540
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 TGCGAGAAAGAAAACTAGTACTCATTTTGGACTTGGATCATACACTGATCAACTCAACCA 600
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 AACTCTTTGATCTTTCTGCTGCTGAAAACGAATTGGGAATTCAATCTGCTGCTAAAGAAG 660
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 TTGTTCCGGACAGAAGCTTGTTCACATTGGAGACAATGCAGATGCTTACAAAGTTGAGAC 720
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 CATTTGTCCGTAGATTTTTAAAAGAAGCAAGTGATATGTTTGAGATGTATATATACACTA 780
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 TGGGTGACAAGGCTTATGCAATTGAAATAGCAAAACTTCTTGACCCTGATAATGTATATT 840
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 TTGGCTCAAAGGTGATTTCGAACTCTGATTGCACTCAGCGACACCAGAAAGGTCTTGATG 900
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 TGGTTCTTGGAGATGAAAGTGTTGCAGTGATTCTTGATGACACTGAGTATGTGTGGCAGA 960
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 AACATAAAGAAAATCTGATTCTAATGGAGAGATATCATTATTTTGCTTCTAGTTGTCGCC 1020
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 AATTTGGTTTTGGTGCCAGATCTTTGTCAGAGACAATGCAGGACGAAAGGGAGAATGATG 1080
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 GTGCTTTAGCTACAATTTTAGATGTCTTGGAGCGCATACACACAATTTTCTTTGATCCGG 1140
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 ATGATCAAAAACCTCTTTCTTCACGGGATGTAAGACAGGTGATCAAGAGGGTACGGCAGG 1200
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 AAGTACTTCAAGGCTGCAAACTAGTGTTTACGCGTGTATTCCCGTTACATCAGCGCCAAC 1260
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 AAGATCAGATGATCTGGAAGATGGCCGAGCAGTTGGGTGCCGTTTGCTGCACAGATGTGG 1320
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 ATTCTACGGTCACCCATGTTGTTGCTTTGGATCTAGGAACGGAGAAGGCTCGCTGGGCTG 1380
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 TTAGTAACAAGAAGTTTTTGGTCCACCCCCGCTGGATTGAGGCCGCAAATTTCCGATGGC 1440
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 AACGGCAACAAGAGGAGGATTTTCCTGTAGCTCGACCAAAGGAGAAGGGTAAAGAAAATG 1500
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 CCGCTGATGCTCCTATCTCAAAGGAGAACGGTGACAAAAATGCCGCTGATGCTGCTAACG 1560
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 CAAAGAAGGGTAACGAAAATGTCGCTGATGCTGGTAGCACAAAGGAGGGGAGTAAAGAAA 1620
consensus_10134#1 ------------------------------------------------------------
consensus_10134#0 ATGCTGATGATGCTGCTAACTCAGAGGAGGAGTAAAGAAAATGCTGATGATGCTGCTAAC 1680
consensus_10134#1 -------------------------------------------CTGATGATGCTGCTAAC 17
*****************
consensus_10134#0 GCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTGCAACTGGCTCGTAACCAGCTTAT 1740
consensus_10134#1 GCAGAGAAGAGTAAATCTGATGGTGCTGCCAGCGGTGCAACTGGCTCGTAACCAGCTTAT 77
************************************************************
consensus_10134#0 ACCTTTTGTAAACCGTTGCGGACATTGCTGTAGCTGCGAACCTACATTAGGATACGTACT 1800
consensus_10134#1 ACCTTTTGTAAACCGTTGCGGACATTGCTGTAGCTGCGAACCTACATTAGGATACGTACT 137
************************************************************
consensus_10134#0 CTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGACTGTGCGGATGATGGTGTTATGGT 1860
consensus_10134#1 CTTGCGAAATAGAAATTGTGGCTAGTTTGAATCGGAAAAAAAAAAAAAAAAAAAAAAAAA 197
************************************ * * *
consensus_10134#0 ACATGTGAGATTTTTCCTACTGATCTGGGCCTCCAGCCATATACTTTAGTTGACAAAAA- 1919
consensus_10134#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAGGAAAAAA 257
* * * * * * * * * * * *****
consensus_10134#0 ----------
consensus_10134#1 AAAAAGGCCC 267
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||