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Oryza sativa
cluster # 10163 cluster # 10163       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10163#0 length = 1735 sequences # 4  
consensus_10163#1 length = 1026 sequences # 1  
consensus_10163#2 length = 678 sequences # 1  
consensus_10163#3 length = 140 sequences # 1  

consensusID : consensus_10163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1735
fasta sequence
                              [CCCCCGCGCCGCCAAGCCCTAGCTAGGGTTTTGCCCCCCCCCCCACCCTCCCCCCCCCCATGGATCCCTACCCCAAGAAGCGCAAGCCCGACGAGAACGGCGCGGCCGTGGCCTCCTCCCCGGCCGCGGGCGCCGCCGCGCTCGGCCTCACCCGCGACGACCTCCTCCGCCTCGTCGAGCCGCTCTCCCGGGACCAGCTCGCCGACATCGCCGCCACCGCCGCGCTCGCCTCGGGGGTGGCCCTCGACGCCGTGCGCGCCGCCGCCGACCGGGACCCGGCCCTCCGCAAGCTCTTCGTGCGGGGGCTCGGCTGGGAGACCAACTCCGACTCGCTCCGGGCCATCTTCTCCGCCTTCGGCGACCTCGAGGAGGCCGTCGTCATCACCGACAAGTCCACCGGCCGCTCCAAGGGCTACGGGTTCGTCACGTTCCGCCACGCCGACTCCGCCGTCCTCGCCCTCAAGGAGCCCTCGAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCCGCCGCCGGCGCGGCCGGGGGGGCGTCGGGCGGGGCCGCCGGCGCCGGTGGCGCCCCCGCGGCCGACGTCTCCCTCCGCAAGATCTTCGTCGGGAACGTCCCCGCCGACATGCCGTCGGAGCGCCTCCTTGCGCATTTCGCAGCCTATGGTGAGATTGAGGAGGGGCCTCTAGGGTTCGACAAGCAGACGGGCAAGTTCCGGGGCTTTGCCCTCTTTGCGTACAAGACACCCGAGGGTGCGCAGGCCTCGTTAGTGGACTCGGTGAAGGTGATTGACGGGCACCAGCTTGTCTGCAAGCTAGCGATCGAAGGGAAAAAGGGGAAGCAATCGCAGCAGCAGCAGCAGCAATCTGGACCTGGTGGGGCTCAGCCGCCCCAAATGCTCCAAGGCGGGCCGCCGGACATGCCGGGTTCAGGGCTTGGGCTTGGTGGACCACAAATGGGTGCGCAGTATGGTGGCCCTGGGAGTCTGTCTTCGTATGGTGCATTTGGGGGTGTAGGCGCTGGGCTAGGTGGTCCCAATCCGTATGCGAATTTGCCATCTTCCATGGGCGGCGGCGGAGCTGGGTTGGGTTCATTGGGCAATCAGATGCCTTC-TGGGATGGGTGGTG-CT-GGGGCTGGTGC-GTACGGGCCTGGGGGATTGGGTGGTGGTTCATTTGGGGGCTCATCCCAGTTTGGTGCTGGTGGGATGGGGGCTTATGGGGGTCTAGGCA-TGGGTGGAGCCTCATCACTGTACCGCATGCAACAGGGTTCGGGTGGGCTTCCTTCTGGCGGGTATGGTGAGGGTAACTACCCTCTTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGGTAGAGCTCCTATGTACCCCAATGTGCCTCCTTATTTCTGAGGTGTGTGACAACTCTTGGGAGCATATGCTTTGAATGGTTGTGCTGAATTCAGAAGTTGTCTGCTTACATGGATGTCTTGCATATTCTGGCTGCCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTCAAGCTAGCTTAGTGTTTTCTGAGATCTCTTCATTAGACATGTACTTTCTCATAAATATGTGAGGTGTCGTTTCACATTGTTGTGTAATGCTCATTGTCTTATGATATCCAGTTACTTATGATTACATCTGGTGCTTGGTTTATTTGCGTGACATGTTATTTGGTGGCAACTTGATTGGCGAACC]

[+] EMBL AK120636             [CCCCCGCGCCGCCAAGCCCTAGCTAGGGTTTTGCCCCCCCCCCCACCCTCCCCCCCCCCATGGATCCCTACCCCAAGAAGCGCAAGCCCGACGAGAACGGCGCGGCCGTGGCCTCCTCCCCGGCCGCGGGCGCCGCCGCGCTCGGCCTCACCCGCGACGACCTCCTCCGCCTCGTCGAGCCGCTCTCCCGGGACCAGCTCGCCGACATCGCCGCCACCGCCGCGCTCGCCTCGGGGGTGGCCCTCGACGCCGTGCGCGCCGCCGCCGACCGGGACCCGGCCCTCCGCAAGCTCTTCGTGCGGGGGCTCGGCTGGGAGACCAACTCCGACTCGCTCCGGGCCATCTTCTCCGCCTTCGGCGACCTCGAGGAGGCCGTCGTCATCACCGACAAGTCCACCGGCCGCTCCAAGGGCTACGGGTTCGTCACGTTCCGCCACGCCGACTCCGCCGTCCTCGCCCTCAAGGAGCCCTCGAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCCGCCGCCGGCGCGGCCGGGGGGGCGTCGGGCGGGGCCGCCGGCGCCGGTGGCGCCCCCGCGGCCGACGTCTCCCTCCGCAAGATCTTCGTCGGGAACGTCCCCGCCGACATGCCGTCGGAGCGCCTCCTTGCGCATTTCGCAGCCTATGGTGAGATTGAGGAGGGGCCTCTAGGGTTCGACAAGCAGACGGGCAAGTTCCGGGGCTTTGCCCTCTTTGCGTACAAGACACCCGAGGGTGCGCAGGCCTCGTTAGTGGACTCGGTGAAGGTGATTGACGGGCACCAGCTTGTCTGCAAGCTAGCGATCGAAGGGAAAAAGGGGAAGCAATCGCAGCAGCAGCAGCAGCAATCTGGACCTGGTGGGGCTCAGCCGCCCCAAATGCTCCAAGGCGGGCCGCCGGACATGCCGGGTTCAGGGCTTGGGCTTGGTGGACCACAAATGGGTGCGCAGTATGGTGGCCCTGGGAGTCTGTCTTCGTATGGTGCATTTGGGGGTGTAGGCGCTGGGCTAGGTGGTCCCAATCCGTATGCGAATTTGCCATCTTCCATGGGCGGCGGCGGAGCTGGGTTGGGTTCATTGGGCAATCAGATGCCTTC TGGGATGGGTGGTG CT GGGGCTGGTGC GTACGGGCCTGGGGGATTGGGTGGTGGTTCATTTGGGGGCTCATCCCAGTTTGGTGCTGGTGGGATGGGGGCTTATGGGGGTCTAGGCA TGGGTGGAGCCTCATCACTGTACCGCATGCAACAGGGTTCGGGTGGGCTTCCTTCTGGCGGGTATGGTGAGGGTAACTACCCTCTTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGGTAGAGCTCCTATGTACCCCAATGTGCCTCCTTATTTCTGAGGTGTGTGACAACTCTTGGGAGCATATGCTTTGAATGGTTGTGCTGAATTCAGAAGTTGTCTGCTTACATGGATGTCTTGCATATTCTGGCTGCCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTCAAGCTAGCTTAGTGTTTTCTGAGATCTCTTCATTAGACATGTACTTTCTCATAAATATGTGAGGTGTCGTTTCACATTGTTGTGTAATGCTCATTGTCTTATGATATCCAGTTACTTATGATTACATCTGGTGCTTGGTTTATTTGCGTGACATGTTATTTGGTGGCAACTTGATTGGCGAACC]
[+] EMBL CB667881             [                                                                                                                                                                                                                                                                                      GCCCTCCGCAAGCTCTTCGTGCGGGGGCTCGGCTGGGAGACCAACTCCGACTCGCTCCGGGCCATCTTCTCCGCCTTCGGCGACCTCGAGGAGGCCGTCGTCATCACCGACAAGTCCACCGGCCGCTCCAAGGGCTACGGGTTCGTCACGTTCCGCCACGCCGACTCCGCCGTCCTCGCCCTCAAGGAGCCCTCGAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCCGCCGCCGGCGCGGCCGGGGGGGCGTCGGGCGGGGCCGCCGGCGCCGGTGGCGCCCCCGCGGCCGACGTCTCCCTCCGCCAGATCTTCGGCGGGAACGTCCCCGCCGACATGCCGACGGAGCGCCTCCTTGCGCATTTCGCAGCCTATGGTGAGATTGAGGACGGGCCTCTACGGTTCCACCAGCAGACCGGCAAGTTCCGGGGCTTTGCCCTCTTTGTGTACAAGATACCCGAGGGTGCGCAGGCCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI812519             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tcCATT GGCCATCCGA GCCTTCTTGGGAATGGTTGTGTCTCTGGCCTGGTGCTGTACGGCCCT GGGGATT GGTTGTGTTTCATTTGGGGGCTCATCCCACTTT GT CT GTTGGAT GGGGCTTATGGGGTTCTACGCACTGGTTGGA CCTCATCACTGTACCGCATGCAACAGGGTTC GGTGGGCTTCCTTCT GCGGGTATGGTGAGGGTAACTACCCTCTTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGGTAGAGCTCCTATGTACCCCAATGTGCCTCCTTATTTCTGAGGTGTGTGACAACTCTTGGGAGCATATGCTTTGAATGGTTGTGCTGAATTCAGAAGTTGTCTGCTTACATGGATGTCTTGCATATTCTGGCTGCCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTAC AGATAATTCAAGCTAGCTTAGTGTTTTCTGAGATCTCTTCATTAGACATGTACTTTCTCATAAATATGTGAGGTGTCGTTTCAC TTGTTGTGTAAaaaaaaa                                                                                          ]
[+] EMBL AF506704             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCTGCCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTCAAGCTAGCTTAGTGTTTTCTGAGATCTCTTCATTAGACATGTACTTTCTCATAAATATGTGAGGTGTCGTTTCACATTGTTGTGTAATGCTCATTGTCTTATGATATCCAGTTACTTTTGATTACATCTGG                                                     ]


>consensus_10163#0 CCCCCGCGCCGCCAAGCCCTAGCTAGGGTTTTGCCCCCCCCCCCACCCTCCCCCCCCCCA TGGATCCCTACCCCAAGAAGCGCAAGCCCGACGAGAACGGCGCGGCCGTGGCCTCCTCCC CGGCCGCGGGCGCCGCCGCGCTCGGCCTCACCCGCGACGACCTCCTCCGCCTCGTCGAGC CGCTCTCCCGGGACCAGCTCGCCGACATCGCCGCCACCGCCGCGCTCGCCTCGGGGGTGG CCCTCGACGCCGTGCGCGCCGCCGCCGACCGGGACCCGGCCCTCCGCAAGCTCTTCGTGC GGGGGCTCGGCTGGGAGACCAACTCCGACTCGCTCCGGGCCATCTTCTCCGCCTTCGGCG ACCTCGAGGAGGCCGTCGTCATCACCGACAAGTCCACCGGCCGCTCCAAGGGCTACGGGT TCGTCACGTTCCGCCACGCCGACTCCGCCGTCCTCGCCCTCAAGGAGCCCTCGAAGAAGA TCGACGGCCGCATGACCGTCACGCAGCTCGCCGCCGCCGGCGCGGCCGGGGGGGCGTCGG GCGGGGCCGCCGGCGCCGGTGGCGCCCCCGCGGCCGACGTCTCCCTCCGCAAGATCTTCG TCGGGAACGTCCCCGCCGACATGCCGTCGGAGCGCCTCCTTGCGCATTTCGCAGCCTATG GTGAGATTGAGGAGGGGCCTCTAGGGTTCGACAAGCAGACGGGCAAGTTCCGGGGCTTTG CCCTCTTTGCGTACAAGACACCCGAGGGTGCGCAGGCCTCGTTAGTGGACTCGGTGAAGG TGATTGACGGGCACCAGCTTGTCTGCAAGCTAGCGATCGAAGGGAAAAAGGGGAAGCAAT CGCAGCAGCAGCAGCAGCAATCTGGACCTGGTGGGGCTCAGCCGCCCCAAATGCTCCAAG GCGGGCCGCCGGACATGCCGGGTTCAGGGCTTGGGCTTGGTGGACCACAAATGGGTGCGC AGTATGGTGGCCCTGGGAGTCTGTCTTCGTATGGTGCATTTGGGGGTGTAGGCGCTGGGC TAGGTGGTCCCAATCCGTATGCGAATTTGCCATCTTCCATGGGCGGCGGCGGAGCTGGGT TGGGTTCATTGGGCAATCAGATGCCTTCTGGGATGGGTGGTGCTGGGGCTGGTGCGTACG GGCCTGGGGGATTGGGTGGTGGTTCATTTGGGGGCTCATCCCAGTTTGGTGCTGGTGGGA TGGGGGCTTATGGGGGTCTAGGCATGGGTGGAGCCTCATCACTGTACCGCATGCAACAGG GTTCGGGTGGGCTTCCTTCTGGCGGGTATGGTGAGGGTAACTACCCTCTTCCAGGGCCTG GTTTCCGGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGGTAGAGCTCCTATGTACC CCAATGTGCCTCCTTATTTCTGAGGTGTGTGACAACTCTTGGGAGCATATGCTTTGAATG GTTGTGCTGAATTCAGAAGTTGTCTGCTTACATGGATGTCTTGCATATTCTGGCTGCCTC TGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTCAAGCTAGCT TAGTGTTTTCTGAGATCTCTTCATTAGACATGTACTTTCTCATAAATATGTGAGGTGTCG TTTCACATTGTTGTGTAATGCTCATTGTCTTATGATATCCAGTTACTTATGATTACATCT GGTGCTTGGTTTATTTGCGTGACATGTTATTTGGTGGCAACTTGATTGGCGAACC



consensusID : consensus_10163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1026
fasta sequence
                              [TNTTTTTTNNGTTTGTGTNTTTGTTGTTGTTTGTCNCTNTTTNTTTTTTTNTTTGTCTNNGTGGTTNNTTTNTGTTTTCTTGTTGNGCNNNNNGTTGGTCGTCCTTGTTTTTGNTTGTTTTTTGTTGTNTTGTGGTTGNTGTGTGCTTGCCGNTTGTGTNTTNGTTGTCNCGTTTTTGTNCNGTCTCTTTGTCGTGTTGGCCNNTGTTNNTGGCNGGGGTTTGGTTTGGTGGTCTGGTTNTNTCGTNTTGGTNNGTTGTGGTTTGGGTGTGTTTNGTTGTNTGNGNGTCTTTTGGTTNTTTAGNGAATNTNTGTGGTTTTGGTGGGGGTNTTTCNNGTTGTNAATGGTTTANAGGTGNGGANCGTTAGGGATGGTCTTGGTTTATTTTTGTTTTTTTTTGATTTTAGNATTTTAATGTNTAGGGATTGATAAATTGATGGTGGGNCATGGNATTGNATNGNTTTNGTAGTTATGTGTGTCTTGTTTTGNTGGAGAGTGNTAATGNGGGTTATNTTTGNAGTAATCAAAAGCTGGTAGTGTATNATGANNGNNAAGTNANAGTANATTTGNGTCATTCTANGTGAANTTNGTNGTNTTGGNGTTGTTNTTNTNGCATATGTTAGNATTGGCTCNNTTTTTGTGTATTTTATGTTGNNTGANTNGTTGTGTNNGGGTGATNTTATTNTNTGTATTTTGATGTNNTTTTGGTGTGTGTGGTTCATGTNGTGGTGTCTCATCCCAGTTGTGTGTGTCGTGGTGTGTGATGGGGGCTTATGGGTGGTCTAGGCATGGTGTGGAGCCTCATCACTGTAGCCAGCATGCATACATGGGTTCNGGGTGGGCTTCCTTCTGCNCGGGTATGGTGTAGGGTNTACTACCCTCTTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGTGTAGAGCTCCTATGTACCCCAATGNGCCTCCNTATTTCTGAGGTAATNTTTNGCAACCCTTCCGCTGTCTTGANTNATTTTATTTTTTT]

[+] EMBL BM419220             [TNTTTTTTNNGTTTGTGTNTTTGTTGTTGTTTGTCNCTNTTTNTTTTTTTNTTTGTCTNNGTGGTTNNTTTNTGTTTTCTTGTTGNGCNNNNNGTTGGTCGTCCTTGTTTTTGNTTGTTTTTTGTTGTNTTGTGGTTGNTGTGTGCTTGCCGNTTGTGTNTTNGTTGTCNCGTTTTTGTNCNGTCTCTTTGTCGTGTTGGCCNNTGTTNNTGGCNGGGGTTTGGTTTGGTGGTCTGGTTNTNTCGTNTTGGTNNGTTGTGGTTTGGGTGTGTTTNGTTGTNTGNGNGTCTTTTGGTTNTTTAGNGAATNTNTGTGGTTTTGGTGGGGGTNTTTCNNGTTGTNAATGGTTTANAGGTGNGGANCGTTAGGGATGGTCTTGGTTTATTTTTGTTTTTTTTTGATTTTAGNATTTTAATGTNTAGGGATTGATAAATTGATGGTGGGNCATGGNATTGNATNGNTTTNGTAGTTATGTGTGTCTTGTTTTGNTGGAGAGTGNTAATGNGGGTTATNTTTGNAGTAATCAAAAGCTGGTAGTGTATNATGANNGNNAAGTNANAGTANATTTGNGTCATTCTANGTGAANTTNGTNGTNTTGGNGTTGTTNTTNTNGCATATGTTAGNATTGGCTCNNTTTTTGTGTATTTTATGTTGNNTGANTNGTTGTGTNNGGGTGATNTTATTNTNTGTATTTTGATGTNNTTTTGGTGTGTGTGGTTCATGTNGTGGTGTCTCATCCCAGTTGTGTGTGTCGTGGTGTGTGATGGGGGCTTATGGGTGGTCTAGGCATGGTGTGGAGCCTCATCACTGTAGCCAGCATGCATACATGGGTTCNGGGTGGGCTTCCTTCTGCNCGGGTATGGTGTAGGGTNTACTACCCTCTTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGTGTAGAGCTCCTATGTACCCCAATGNGCCTCCNTATTTCTGAGGTAATNTTTNGCAACCCTTCCGCTGTCTTGANTNATTTTATTTTTTT]


>consensus_10163#1 TNTTTTTTNNGTTTGTGTNTTTGTTGTTGTTTGTCNCTNTTTNTTTTTTTNTTTGTCTNN GTGGTTNNTTTNTGTTTTCTTGTTGNGCNNNNNGTTGGTCGTCCTTGTTTTTGNTTGTTT TTTGTTGTNTTGTGGTTGNTGTGTGCTTGCCGNTTGTGTNTTNGTTGTCNCGTTTTTGTN CNGTCTCTTTGTCGTGTTGGCCNNTGTTNNTGGCNGGGGTTTGGTTTGGTGGTCTGGTTN TNTCGTNTTGGTNNGTTGTGGTTTGGGTGTGTTTNGTTGTNTGNGNGTCTTTTGGTTNTT TAGNGAATNTNTGTGGTTTTGGTGGGGGTNTTTCNNGTTGTNAATGGTTTANAGGTGNGG ANCGTTAGGGATGGTCTTGGTTTATTTTTGTTTTTTTTTGATTTTAGNATTTTAATGTNT AGGGATTGATAAATTGATGGTGGGNCATGGNATTGNATNGNTTTNGTAGTTATGTGTGTC TTGTTTTGNTGGAGAGTGNTAATGNGGGTTATNTTTGNAGTAATCAAAAGCTGGTAGTGT ATNATGANNGNNAAGTNANAGTANATTTGNGTCATTCTANGTGAANTTNGTNGTNTTGGN GTTGTTNTTNTNGCATATGTTAGNATTGGCTCNNTTTTTGTGTATTTTATGTTGNNTGAN TNGTTGTGTNNGGGTGATNTTATTNTNTGTATTTTGATGTNNTTTTGGTGTGTGTGGTTC ATGTNGTGGTGTCTCATCCCAGTTGTGTGTGTCGTGGTGTGTGATGGGGGCTTATGGGTG GTCTAGGCATGGTGTGGAGCCTCATCACTGTAGCCAGCATGCATACATGGGTTCNGGGTG GGCTTCCTTCTGCNCGGGTATGGTGTAGGGTNTACTACCCTCTTCCAGGGCCTGGTTTCC GGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGTGTAGAGCTCCTATGTACCCCAAT GNGCCTCCNTATTTCTGAGGTAATNTTTNGCAACCCTTCCGCTGTCTTGANTNATTTTAT TTTTTT



consensusID : consensus_10163#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence
                              [TTCGTATGGTCCATTTGGGGGTGTAGGCGCTGGGCTAGGTGGTCCCAATCCGTATGGGAATTTGCCATTTTCCATGGGCGGCGGCGGAGCTGGGTTGGGTTCATTGGGCAATCAGATCCCTTTTGGGATGGGTGGTGCTGGGGCTGGTGCGTACGGGCCTGGGGGATTGGGGGGTGGTTCATTTGGGGGCTCATCCCAGTTTGGTGCTGGTGGGATGGGGGCTTATGGGGGTTTAGGCATGGGGGGACCCTCATCCCTGTCCCGCATGCAACAGGGTTGGGGGGGGCTTCCTTTTGGGGGGTAGGGGGGGGGTAACTCCCCTTTTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGGGGAATGTCCCCTGGCCCAGGGGGTAGAGCTCCTATGTCCCCCAATGGGCCCCCTTATTTTTGGGGGGGGGGCCAACTCTGGGGAGCATATGCTTTGAAGGGTTGGGCGGAATTCAGAAGTTGTTTGCTTCCATGGATGTTTTGCATATTTTGGCCCCCTTTGATATGGAAACCAGTTTTTGGCTTTCAATTTTTCTGTTCCAAGATAATTCAAGCTGGCTTAGTGTTTTTGGAGATTTCTTCATTAGCCAGGTACTTTTTCATAAAAAGGGGGGGGGTCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA]

[-] EMBL CB667882             [TTCGTATGGTCCATTTGGGGGTGTAGGCGCTGGGCTAGGTGGTCCCAATCCGTATGGGAATTTGCCATTTTCCATGGGCGGCGGCGGAGCTGGGTTGGGTTCATTGGGCAATCAGATCCCTTTTGGGATGGGTGGTGCTGGGGCTGGTGCGTACGGGCCTGGGGGATTGGGGGGTGGTTCATTTGGGGGCTCATCCCAGTTTGGTGCTGGTGGGATGGGGGCTTATGGGGGTTTAGGCATGGGGGGACCCTCATCCCTGTCCCGCATGCAACAGGGTTGGGGGGGGCTTCCTTTTGGGGGGTAGGGGGGGGGTAACTCCCCTTTTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGGGGAATGTCCCCTGGCCCAGGGGGTAGAGCTCCTATGTCCCCCAATGGGCCCCCTTATTTTTGGGGGGGGGGCCAACTCTGGGGAGCATATGCTTTGAAGGGTTGGGCGGAATTCAGAAGTTGTTTGCTTCCATGGATGTTTTGCATATTTTGGCCCCCTTTGATATGGAAACCAGTTTTTGGCTTTCAATTTTTCTGTTCCAAGATAATTCAAGCTGGCTTAGTGTTTTTGGAGATTTCTTCATTAGCCAGGTACTTTTTCATAAAAAGGGGGGGGGTCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA]


>consensus_10163#2 TTCGTATGGTCCATTTGGGGGTGTAGGCGCTGGGCTAGGTGGTCCCAATCCGTATGGGAA TTTGCCATTTTCCATGGGCGGCGGCGGAGCTGGGTTGGGTTCATTGGGCAATCAGATCCC TTTTGGGATGGGTGGTGCTGGGGCTGGTGCGTACGGGCCTGGGGGATTGGGGGGTGGTTC ATTTGGGGGCTCATCCCAGTTTGGTGCTGGTGGGATGGGGGCTTATGGGGGTTTAGGCAT GGGGGGACCCTCATCCCTGTCCCGCATGCAACAGGGTTGGGGGGGGCTTCCTTTTGGGGG GTAGGGGGGGGGTAACTCCCCTTTTCCAGGGCCTGGTTTCCGGGGTCAGGAGGGGGGAAT GTCCCCTGGCCCAGGGGGTAGAGCTCCTATGTCCCCCAATGGGCCCCCTTATTTTTGGGG GGGGGGCCAACTCTGGGGAGCATATGCTTTGAAGGGTTGGGCGGAATTCAGAAGTTGTTT GCTTCCATGGATGTTTTGCATATTTTGGCCCCCTTTGATATGGAAACCAGTTTTTGGCTT TCAATTTTTCTGTTCCAAGATAATTCAAGCTGGCTTAGTGTTTTTGGAGATTTCTTCATT AGCCAGGTACTTTTTCATAAAAAGGGGGGGGGTCGGTTCAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAGGA



consensusID : consensus_10163#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence
                              [GGCTGCCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTCATAAATATGTGAGGTGTCGTTTCACATTGTTGTGTAATGCTCATTGCTTATGATATCCAGTTACTTATGATTACATCTGG]

[+] EMBL AF506706             [GGCTGCCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTCATAAATATGTGAGGTGTCGTTTCACATTGTTGTGTAATGCTCATTGCTTATGATATCCAGTTACTTATGATTACATCTGG]


>consensus_10163#3 GGCTGCCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTC ATAAATATGTGAGGTGTCGTTTCACATTGTTGTGTAATGCTCATTGCTTATGATATCCAG TTACTTATGATTACATCTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10163#0      CCCCCGCGCCGCCAAGCCCTAGCTAGGGTTTTGCCCCCCCCCCCACCCTCCCCCCCCCCA 60
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      TGGATCCCTACCCCAAGAAGCGCAAGCCCGACGAGAACGGCGCGGCCGTGGCCTCCTCCC 120
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      CGGCCGCGGGCGCCGCCGCGCTCGGCCTCACCCGCGACGACCTCCTCCGCCTCGTCGAGC 180
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      CGCTCTCCCGGGACCAGCTCGCCGACATCGCCGCCACCGCCGCGCTCGCCTCGGGGGTGG 240
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      CCCTCGACGCCGTGCGCGCCGCCGCCGACCGGGACCCGGCCCTCCGCAAGCTCTTCGTGC 300
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      GGGGGCTCGGCTGGGAGACCAACTCCGACTCGCTCCGGGCCATCTTCTCCGCCTTCGGCG 360
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      ACCTCGAGGAGGCCGTCGTCATCACCGACAAGTCCACCGGCCGCTCCAAGGGCTACGGGT 420
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      TCGTCACGTTCCGCCACGCCGACTCCGCCGTCCTCGCCCTCAAGGAGCCCTCGAAGAAGA 480
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      TCGACGGCCGCATGACCGTCACGCAGCTCGCCGCCGCCGGCGCGGCCGGGGGGGCGTCGG 540
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      GCGGGGCCGCCGGCGCCGGTGGCGCCCCCGCGGCCGACGTCTCCCTCCGCAAGATCTTCG 600
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      TCGGGAACGTCCCCGCCGACATGCCGTCGGAGCGCCTCCTTGCGCATTTCGCAGCCTATG 660
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      GTGAGATTGAGGAGGGGCCTCTAGGGTTCGACAAGCAGACGGGCAAGTTCCGGGGCTTTG 720
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      CCCTCTTTGCGTACAAGACACCCGAGGGTGCGCAGGCCTCGTTAGTGGACTCGGTGAAGG 780
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      TGATTGACGGGCACCAGCTTGTCTGCAAGCTAGCGATCGAAGGGAAAAAGGGGAAGCAAT 840
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ------------------------------------------------------------
                                                                                   

consensus_10163#0      CGCAGCAGCAGCAGCAGCAATCTGGACCTGGTGGGGCTCAGCCGCCCCAAATGCTCCAAG 900
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      ---------------------------------------------TNTTTTTTNNGTTTG 15
                                                                                   

consensus_10163#0      GCGGGCCGCCGGACATGCCGGGTTCAGGGCTTGGGCTTGGTGGACCACAAATGGGTGCGC 960
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      TGTNTTTGTTGTTGTTTGTCNCTNTTTNTTTTTTTNTTTGTCTNNGTGGTTNNTTTNTGT 75
                                                                                   

consensus_10163#0      AGTATGGTGGCCCTGGGAGTCTGTCTTCGTATGGTGCATTTGGGGGTGTAGGCGCTGGGC 1020
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      -------------------------TTCGTATGGTCCATTTGGGGGTGTAGGCGCTGGGC 35
consensus_10163#1      TTTCTTGTTGNGCNNNNNGTTGGTCGTCCTTGTTTTTGNTTGTTTTTTGTTGTNTTGTGG 135
                                                                                   

consensus_10163#0      TAGGTGGTCCCAATCCGTATGCGAATTTGCCATCTTCCATGGGCGGCGGCGGAGCTGGGT 1080
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      TAGGTGGTCCCAATCCGTATGGGAATTTGCCATTTTCCATGGGCGGCGGCGGAGCTGGGT 95
consensus_10163#1      TTGNTGTGTGCTTGCCGNTTGTGTNTTNGTTGTCNCGTTTTTGTNCNGTC---TCTTTGT 192
                                                                                   

consensus_10163#0      TGGGTTCATTGGGCAATCAGATGCCTTCTGGGATGGGTGGTGCTGGGGCTGGTGCGTACG 1140
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      TGGGTTCATTGGGCAATCAGATCCCTTTTGGGATGGGTGGTGCTGGGGCTGGTGCGTACG 155
consensus_10163#1      CGTGTTGGCCNNTGTTNNTGGCNGGGGTTTGGTTTGGTGGT-CTGGTTNTNTCGTNTTGG 251
                                                                                   

consensus_10163#0      GGCCTGGGGGATTGGGTGGTGGTTCATTTGGGGGCTCATCCCAGTTTGGTGCTGGTGGGA 1200
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      GGCCTGGGGGATTGGGGGGTGGTTCATTTGGGGGCTCATCCCAGTTTGGTGCTGGTGGGA 215
consensus_10163#1      TNNGTTGTGGTTTGGGTGTGTTTNGTTGTNTGNGNGTCTTTTGGTTNTTTAGNGAATNTN 311
                                                                                   

consensus_10163#0      TGGGGGCTTATGGGGGTCTAGGCATG----GGTGGAGCCTCATCACTGTACCGCATGCAA 1256
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      TGGGGGCTTATGGGGGTTTAGGCATG----GGGGGACCCTCATCCCTGTCCCGCATGCAA 271
consensus_10163#1      TGTGGTTTTGGTGGGGGTNTTTCNNGTTGTNAATGGTTTANAGGTGNGGANCGTTAGGGA 371
                                                                                   

consensus_10163#0      CAGGGTTCGGGTGGGCTTCCTTCTGGCGGGTATGGTGAGGGTAACTACCCTCTTCCAGGG 1316
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      CAGGGTTGGGGGGGGCTTCCTTTTGGGGGGTAGGGGGGGGGTAACTCCCCTTTTCCAGGG 331
consensus_10163#1      TGGTCTTGGTTTATTTTTGTTTTTTTTTGATTTTAGNATTTTAATGTNTAGGGATTGATA 431
                                                                                   

consensus_10163#0      CCTGGTTTCCGGGGTCAGGAGGGTGGAATGTCACCTGGACCAGGTGGTAGAGCTCCTATG 1376
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      CCTGGTTTCCGGGGTCAGGAGGGGGGAATGTCCCCTGGCCCAGGGGGTAGAGCTCCTATG 391
consensus_10163#1      AATTGATGGTGGGNCATGGNATTGNATNGNTTTNGTAGTTATGTGTGTCTTGTTTTGNTG 491
                                                                                   

consensus_10163#0      TACCCCAATGTGCCTCCTTATTTCTGAGGTGTGTGACAACTCTTGGGAGCATATGCTTTG 1436
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      TCCCCCAATGGGCCCCCTTATTTTTGGGGGGGGGGCCAACTCTGGGGAGCATATGCTTTG 451
consensus_10163#1      GAGAGTGNTAATGNGGGTTATNTTTGNAGTAATCAAAAGCTGGTAGTGTATNATGANNGN 551
                                                                                   

consensus_10163#0      AATGGTTGTGCTGAATTCAGAAGTTGTCTGCTTACATGGATGTCTTGCATATTCTGGCTG 1496
consensus_10163#3      -------------------------------------------------------GGCTG 5
consensus_10163#2      AAGGGTTGGGCGGAATTCAGAAGTTGTTTGCTTCCATGGATGTTTTGCATATTTTGGCCC 511
consensus_10163#1      NAAGTNANAGTANATTTGNGTCATTCTANGTGAANTTNGTNGTNTTG-GNGTTGTTNTTN 610
                                                                                   

consensus_10163#0      CCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTCAAGCT 1556
consensus_10163#3      CCTCTGATATGGAAATCAGTTTTTTGCTCTCAATTTTTCTGTTACAAGATAATTCA---- 61
consensus_10163#2      CCTTTGATATGGAAACCAGTTTTTGGCTTTCAATTTTTCTGTTCCAAGATAATTCAAGCT 571
consensus_10163#1      TNGCATATGTTAGNATTGGCTCNNTTTTTGTGTATTTTATGTTGNNTGANTNGTTGTGTN 670
                             ** *    *   * *      *      **** ****    **    *      

consensus_10163#0      AGCTTAGTGTTTTCTGAGATCTCTTCATTAGACATGTACTTTCTCATAAATATGTGAGGT 1616
consensus_10163#3      ----------------------------------------------TAAATATGTGAGGT 75
consensus_10163#2      GGCTTAGTGTTTTTGGAGATTTC-----------------------TTCATTAGCCAGGT 608
consensus_10163#1      NGGGTGATNTTATTNTNTGTATTTTGAT---GTNNTTTTGGTGTGTGTGGTTCATGTNGT 727
                                                                         *       **

consensus_10163#0      GTCGTTTCA-CATTGTTGTGTAATGCTCATTGTCTTATGATATCCAGTTACTTATGATTA 1675
consensus_10163#3      GTCGTTTCA-CATTGTTGTGTAATGCTCATTG-CTTATGATATCCAGTTACTTATGATTA 133
consensus_10163#2      ACTTTTTCA-TAAAAAGGGGGGGGGTCGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 667
consensus_10163#1      GGTGTCTCATCCCAGTTGTGTGTGTCGTGGTGTGTGATGGGGGCTTATGGGTGGTCTAGG 787
                           * ***        * *          *     *                       

consensus_10163#0      CATCTGGTGCTTGGTTTATTTGCGTGACATGTTATTTGGTGGCAACTTGATTGGCGAACC 1735
consensus_10163#3      CATCTGG----------------------------------------------------- 140
consensus_10163#2      AAAAAAAAGGA------------------------------------------------- 678
consensus_10163#1      CATGGTGTGGAGCCTCATCACTGTAGCCAGCATGCATACATGGGTTCNGGGTGGGCTTCC 847
                        *                                                          

consensus_10163#0      ------------------------------------------------------------
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      TTCTGCNCGGGTATGGTGTAGGGTNTACTACCCTCTTCCAGGGCCTGGTTTCCGGGGTCA 907
                                                                                   

consensus_10163#0      ------------------------------------------------------------
consensus_10163#3      ------------------------------------------------------------
consensus_10163#2      ------------------------------------------------------------
consensus_10163#1      GGAGGGTGGAATGTCACCTGGACCAGGTGTGTAGAGCTCCTATGTACCCCAATGNGCCTC 967
                                                                                   

consensus_10163#0      -----------------------------------------------------------
consensus_10163#3      -----------------------------------------------------------
consensus_10163#2      -----------------------------------------------------------
consensus_10163#1      CNTATTTCTGAGGTAATNTTTNGCAACCCTTCCGCTGTCTTGANTNATTTTATTTTTTT 1026
                                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)