These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 898 fasta sequence [CTAGCAGCTAGCAAGTGTACACACATCTATAAATTGTAGTAGTAACCACCTTAGCTGAGGTGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTGCCTTAGCTAATTAATTACTCTCCATTATTACAT-GCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATTAATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATCAAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAAA] [+] EMBL AK121059 [CTAGCAGCTAGCAAGTGTACACACATCTATAAATTGTAGTAGTAACCACCTTAGCTGAGGTGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCTAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTTCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTGCCTTAGCTAATTAATTACTCTCCATTATTACAT GCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATTAATAG ] [+] EMBL CA755757 [ aattgTAAATTGTAGTAGTAACCACCTTAGCTAAGGTGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAATGTGCGCGCCACGTATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCCAACAAGCCACTATCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGNACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGGCAACTACAAGTTCGTCGACTGCGGCGACTACTGATTAAGCTATAGCTGCCTTAGCTAATTAATTACTCTCCATTA TACATGGCT ATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAAATTAGAG ] [-] EMBL CB630260 [ AGAAGGGTGGTGCCGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACATATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTACCTTAGCTAATTAATTACTCTCCATTATTACAT GCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATGCACAGGAAGTATCAATTAATAGATTTCTCTTGA ] [+] EMBL CB630259 [ GGTGCCGGTGGCGGCGGTGCTGTGCGCGGTGGTCGCCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACATATCACTACTATCGCCCCGCGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACGCCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTGGTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTACCTTAGCTAATTAATTACTCTCCATTATTACAT GCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATGCACAGGAAGTATCAATTAATAGATT ] [+] EMBL AT003727 [ TCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATTAATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATCAAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAAA] [+] EMBL AT003709 [ GCAGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCAATTAATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATCAAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAAA] consensusID : consensus_10192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CAANGCCCNNNNANNNCNNCCCCNNCCGNCNNAANGGGNCNCCCNANAGAGCCNCGNCGGTTNCCCNCCCNANCGNNTNNNCGNNCGGTTNCNAGAAGNCCNCGTGGATTCCCNCCGGNCTGCAGNANTTCGGCNCNCAGNGTCGACAGGCCCACAGTAGAGNGGTNACCTNTGCCTGATCAATANATTNAGCAGCTGATNAATAANTGTGATATGTTGATCGATCNGNTCAAGATCTNTGTATACATATTCCCAGNAAGNATCAATTAATAGATTTCTCTNGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGANATGATCNAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGNCATTNTCTAAAAAAAAAA] [+] EMBL AT003413 [CAANGCCCNNNNANNNCNNCCCCNNCCGNCNNAANGGGNCNCCCNANAGAGCCNCGNCGGTTNCCCNCCCNANCGNNTNNNCGNNCGGTTNCNAGAAGNCCNCGTGGATTCCCNCCGGNCTGCAGNANTTCGGCNCNCAGNGTCGACAGGCCCACAGTAGAGNGGTNACCTNTGCCTGATCAATANATTNAGCAGCTGATNAATAANTGTGATATGTTGATCGATCNGNTCAAGATCTNTGTATACATATTCCCAGNAAGNATCAATTAATAGATTTCTCTNGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGANATGATCNAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACTGTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGNCATTNTCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10192#0 CTAGCAGCTAGCAAGTGTACACACATCTATAAATTGTAGTAGTAACCACCTTAGCTGAGG 60 consensus_10192#1 ------------------------------------------------------------ consensus_10192#0 TGATGGCCATGGCGATGAGAAGGGTGGTGCTGGTGGCGGCGGTGCTGTGCGCGGTGGTCG 120 consensus_10192#1 ------------------------------------------------------------ consensus_10192#0 CCATGGTCACAGCGCAGGAGGCATCCAACGTGCGCGCCACGTATCACTACTATCGCCCCG 180 consensus_10192#1 ------------------------------------------------------------ consensus_10192#0 CGCAGAACAACTGGGACTTAGGAGCCCCAGCCGTGAGCGCGTATTGTGCTACGTGGGACG 240 consensus_10192#1 ------------------------------------------------------------ consensus_10192#0 CCAACAAGCCACTGTCGTGGCGTCAGAAGTATGGCTGGACTGCCTTTTGCGGGCCCGTTG 300 consensus_10192#1 ------------------------------------------------------------ consensus_10192#0 GTCCTAGGGGTCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGG 360 consensus_10192#1 ------------------------------------------------------------ consensus_10192#0 CGCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGCGGCCTTGACCTGGACTGGG 420 consensus_10192#1 ------------------------------------------------------------ consensus_10192#0 ACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGCCACCTCATCG 480 consensus_10192#1 --------------------------------CAANGCC-CNNNNANNNCNNCCCCNNCC 27 ** ** * * * ** * * consensus_10192#0 TCAACTACAAGTTCGTCGACTGCG--GCGACAACTGATTAAGCTATAGCTGCCTTAGCTA 538 consensus_10192#1 GNCNNAANGGGNCNCCCNANAGAGCCNCGNCGGTTNCCCNCCCNANCGNNTNNNCGNNCG 87 * * * * * * ** * * * * * consensus_10192#0 ATTAATTACTCTCCATTATTACATGCTAATAAGGTTGCTGCTGCATATACATTATTGTCG 598 consensus_10192#1 GTTNCNAGAAGNCCNCG--TGGATTCCCNCCGGNCTGCAGNANTTCGGCNCNCAGNGTCG 145 ** ** * ** * * *** * * **** consensus_10192#0 ACAGGGC-AGAGTAGAGTGGTAAACTCTGCCTGATGAATAAATTAAGCAGCTGATAAATA 657 consensus_10192#1 ACAGGCCCACAGTAGAGNGGTNACCTNTGCCTGATCAATANATTNAGCAGCTGATNAATA 205 ***** * * ******* *** * ** ******** **** *** ********** **** consensus_10192#0 ATTGTGATATGTTGATCGATCTGCTCAAGATCTTTGTATACATATTCACAGGAAGTATCA 717 consensus_10192#1 ANTGTGATATGTTGATCGATCNGNTCAAGATCTNTGTATACATATTCCCAGNAAGNATCA 265 * ******************* * ********* ************* *** *** **** consensus_10192#0 ATTAATAGATTTCTCTCGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGAGATGATC 777 consensus_10192#1 ATTAATAGATTTCTCTNGAGTATAATGGACTCTGTGGATGGAGGTCAGCTGGANATGATC 325 **************** ************************************ ****** consensus_10192#0 AAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACT 837 consensus_10192#1 NAACATATCTTAAAAAAATCAATGGCGTCATATATTAAAAAACAGAGGTAGTATGACACT 385 *********************************************************** consensus_10192#0 GTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGATATTATCTAAAAAAAAA 897 consensus_10192#1 GTAATGGTCCGTATACCTTATATCAGTATATATGATGTAGTGNCATTNTCTAAAAAAAAA 445 ****************************************** *** ************ consensus_10192#0 A 898 consensus_10192#1 A 446 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||