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Oryza sativa
cluster # 10193 cluster # 10193       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10193#0 length = 1240 sequences # 6  
consensus_10193#1 length = 363 sequences # 1  

consensusID : consensus_10193#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1240
fasta sequence
                              [TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGATACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCGTAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA-CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCA-CAG-CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK068088             [TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGATACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCGTAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCA C                                                                ]
[+] EMBL AK066611             [                                                                                                                                                                        TTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGA                                                                      ]
[+] EMBL OSC109101            [                                                                                                                                                                            ccgCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGTNTNGTCCTCTTCTTNGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCNACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI811148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGAGAAGA CCGTCC CCGCGCGA CTGTCCATCAGGTTCCTCTACCAGGGT GCCCAACCGACATCGTCGCCGTCGACGTCGCCACGGTC GGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCA GGTGGTGGTCACCCGGCGGGTACGACGGGAAGTGGGTGT GGCCGTCGGCGAGGTCCTGCCGCGGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCACCAGCCCCACAAGAACAACTTGCTTTCCGTTGCAAAAAAAAAA                       ]
[+] EMBL AU102133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGTGCAGGCGCCGGCGGGGCCNCTGCAGTTCAGGGTGGTGGTNA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCNGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCNCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGNGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCNTCGAATTAAGAGCCA CAG CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CF315159             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCATCGAATTAAGAGCCA CAG CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10193#0 TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGA TACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCG TAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAA GTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCG AATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCG TCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCA AGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCC TCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCG GTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGG CGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGC TGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACAC GCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACC TGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCT ACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACT GGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGC CGCTGCAGTTCAGGGTGGTGGTCACCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACG GCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCG CCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACAC CGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACG CATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCACAGCCCACAAGAACAACTTGCCTT CCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10193#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence
                              [GGTCGGTTCGTCGAACTGGAAGTTCATGACGCTGGACTACGGCCGGCGTGGAGCACGGCACCAGGCACCGCGGGGTCCGCTTCCAAGTTCAGGTGTGTTCACGGCGGGTACGACGGGAATTGGGTTGGCCCTCGGCGAGGTCCTCCCGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACACACCGCATTACATGTACATTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTACCATCCATCGAATTAAGACCACAGCCCACAAGAAAAAAAAAA]

[+] EMBL BI809434             [GGTCGGTTCGTCGAACTGGAAGTTCATGACGCTGGACTACGGCCGGCGTGGAGCACGGCACCAGGCACCGCGGGGTCCGCTTCCAAGTTCAGGTGTGTTCACGGCGGGTACGACGGGAATTGGGTTGGCCCTCGGCGAGGTCCTCCCGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACACACCGCATTACATGTACATTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTACCATCCATCGAATTAAGACCACAGCCCACAAGAAAAAAAAAA]


>consensus_10193#1 GGTCGGTTCGTCGAACTGGAAGTTCATGACGCTGGACTACGGCCGGCGTGGAGCACGGCA CCAGGCACCGCGGGGTCCGCTTCCAAGTTCAGGTGTGTTCACGGCGGGTACGACGGGAAT TGGGTTGGCCCTCGGCGAGGTCCTCCCGCGGTGGACGGCCAGACGGGTGTACGACGCCGG CGTCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAG TGACACACACCGCATTACATGTACATTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTT TTGGGACGCATTGAGCAGCTACCATCCATCGAATTAAGACCACAGCCCACAAGAAAAAAA AAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10193#0      TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGA 60
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      TACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCG 120
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      TAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAA 180
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      GTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCG 240
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      AATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCG 300
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      TCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCA 360
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      AGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCC 420
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      TCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCG 480
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      GTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGG 540
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      CGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGC 600
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      TGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACAC 660
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      GCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACC 720
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      TGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCT 780
consensus_10193#1      ------------------------------------------------------------
                                                                                   

consensus_10193#0      ACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACT 840
consensus_10193#1      -------------------------------------------GGTCGGTTCGTCGAACT 17
                                                                  ****** **********

consensus_10193#0      GGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGC-AGGCGCCGGCGGGG 899
consensus_10193#1      GGAAGTTCATGACGCTGGACTACGG-CCGGCGTGGAGCACGGCACCAGGCACCGCGGGGT 76
                       *************** ********* ***************** * **** ***  *** 

consensus_10193#0      CCGCTGC--AGTTCAGGGTGGTGGTCACCGGCGGGTACGACGGGAAGTGGGTGTGGGCCG 957
consensus_10193#1      CCGCTTCCAAGTTCAGGT--GTGTTCAC-GGCGGGTACGACGGGAATTGGGT--TGGCCC 131
                       ***** *  ********   *** **** ***************** *****   **** 

consensus_10193#0      ACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGA 1017
consensus_10193#1      TCGGCGAGGTCCTCCCGCGG---TGGACGGCCAGACGGGTGTACGACGCCGGCGT-CAGA 187
                        ************ ******   ********* ********************** ****

consensus_10193#0      TCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACA 1077
consensus_10193#1      TCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACA 247
                       ********************************** *************************

consensus_10193#0      CACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGG 1137
consensus_10193#1      CACCGCATTA-CATGTACA-TTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGG 305
                       ********** ******** ****************************************

consensus_10193#0      ACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCACAGCCCACAAGAACAACTTGC 1197
consensus_10193#1      ACGCATTGAGCAGCTA-CCATCCATCGAATTAAGA-CCACAGCCCACAAGAAAAAAAAAA 363
                       **************** ****************** **************** **     

consensus_10193#0      CTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1240
consensus_10193#1      -------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)