These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1240 fasta sequence [TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGATACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCGTAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA-CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCA-CAG-CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK068088 [TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGATACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCGTAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCA C ] [+] EMBL AK066611 [ TTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGA ] [+] EMBL OSC109101 [ ccgCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGTNTNGTCCTCTTCTTNGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCNACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCG ] [+] EMBL BI811148 [ GGAGAAGA CCGTCC CCGCGCGA CTGTCCATCAGGTTCCTCTACCAGGGT GCCCAACCGACATCGTCGCCGTCGACGTCGCCACGGTC GGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCA GGTGGTGGTCACCCGGCGGGTACGACGGGAAGTGGGTGT GGCCGTCGGCGAGGTCCTGCCGCGGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCACCAGCCCCACAAGAACAACTTGCTTTCCGTTGCAAAAAAAAAA ] [+] EMBL AU102133 [ GGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGTGCAGGCGCCGGCGGGGCCNCTGCAGTTCAGGGTGGTGGTNA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCNGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCNCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGNGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCNTCGAATTAAGAGCCA CAG CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF315159 [ CCATCGAATTAAGAGCCA CAG CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [GGTCGGTTCGTCGAACTGGAAGTTCATGACGCTGGACTACGGCCGGCGTGGAGCACGGCACCAGGCACCGCGGGGTCCGCTTCCAAGTTCAGGTGTGTTCACGGCGGGTACGACGGGAATTGGGTTGGCCCTCGGCGAGGTCCTCCCGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACACACCGCATTACATGTACATTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTACCATCCATCGAATTAAGACCACAGCCCACAAGAAAAAAAAAA] [+] EMBL BI809434 [GGTCGGTTCGTCGAACTGGAAGTTCATGACGCTGGACTACGGCCGGCGTGGAGCACGGCACCAGGCACCGCGGGGTCCGCTTCCAAGTTCAGGTGTGTTCACGGCGGGTACGACGGGAATTGGGTTGGCCCTCGGCGAGGTCCTCCCGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACACACCGCATTACATGTACATTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTACCATCCATCGAATTAAGACCACAGCCCACAAGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10193#0 TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGA 60 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 TACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCG 120 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 TAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAA 180 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 GTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCG 240 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 AATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCG 300 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 TCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCA 360 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 AGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCC 420 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 TCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCG 480 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 GTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGG 540 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 CGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGC 600 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 TGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACAC 660 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 GCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACC 720 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 TGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCT 780 consensus_10193#1 ------------------------------------------------------------ consensus_10193#0 ACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACT 840 consensus_10193#1 -------------------------------------------GGTCGGTTCGTCGAACT 17 ****** ********** consensus_10193#0 GGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGC-AGGCGCCGGCGGGG 899 consensus_10193#1 GGAAGTTCATGACGCTGGACTACGG-CCGGCGTGGAGCACGGCACCAGGCACCGCGGGGT 76 *************** ********* ***************** * **** *** *** consensus_10193#0 CCGCTGC--AGTTCAGGGTGGTGGTCACCGGCGGGTACGACGGGAAGTGGGTGTGGGCCG 957 consensus_10193#1 CCGCTTCCAAGTTCAGGT--GTGTTCAC-GGCGGGTACGACGGGAATTGGGT--TGGCCC 131 ***** * ******** *** **** ***************** ***** **** consensus_10193#0 ACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGA 1017 consensus_10193#1 TCGGCGAGGTCCTCCCGCGG---TGGACGGCCAGACGGGTGTACGACGCCGGCGT-CAGA 187 ************ ****** ********* ********************** **** consensus_10193#0 TCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACA 1077 consensus_10193#1 TCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACA 247 ********************************** ************************* consensus_10193#0 CACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGG 1137 consensus_10193#1 CACCGCATTA-CATGTACA-TTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGG 305 ********** ******** **************************************** consensus_10193#0 ACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCACAGCCCACAAGAACAACTTGC 1197 consensus_10193#1 ACGCATTGAGCAGCTA-CCATCCATCGAATTAAGA-CCACAGCCCACAAGAAAAAAAAAA 363 **************** ****************** **************** ** consensus_10193#0 CTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1240 consensus_10193#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||