These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1240 fasta sequence [GCCACTCGCCGCCGCCTCCTGCCCCTCGCGCCCCCCGGTCGCGCCCACCTCTCCGCCGCGGCCGCGTCCACCTCCCCCAAAAAACCCTAGCCGCCGCCACCTCTCATCCCACCCTCTCCCTCTCCCGCTGCGTCTGCCTCCCCCTCGCGCCGCCGTCGTCGCCTCCGCCTTCCCCTCGCGCCCGCGCCTCCGCCTTGCAACGTAGCCATCGTCGTCTCCGTCGGCTCGCGCTGCCGCCTCCACCTCCCCCGCCGGTGCCGCCGCCGTCGTCGCGTTGTCGTCTCCGAGCGCCTCCGCCTCCCGCCTCGCGCCGCCGCCGAGCGCAGCCATCCCCGTCTCCGCCACTGCCGTCGGCATCATCGAGCGCCCCCGACTATCGGCCGAGACGGCTAGCTCGGGGAGGGGATGGCTATGGCGCGTCCGTCGACATCGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTAGAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCGTTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGTACATTAACTCCTTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCAATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAATTCCCGAAGTACACATCGCTTACAATGATTGACAGACTTAGTGTTGTTTTAAATTGAACGCTTGTT] [+] EMBL CB630215 [GCCACTCGCCGCCGCCTCCTGCCCCTCGCGCCCCCCGGTCGCGCCCACCTCTCCGCCGCGGCCGCGTCCACCTCCCCCAAAAAACCCTAGCCGCCGCCACCTCTCATCCCACCCTCTCCCTCTCCCGCTGCGTCTGCCTCCCCCTCGCGCCGCCGTCGTCGCCTCCGCCTTCCCCTCGCGCCCGCGCCTCCGCCTTGCAACGTAGCCATCGTCGTCTCCGTCGGCTCGCGCTGCCGCCTCCACCTCCCCCGCCGGTGCCGCCGCCGTCGTCGCGTTGTCGTCTCCGAGCGCCTCCGCCTCCCGCCTCGCGCCGCCGCCGAGCGCAGCCATCCCCGTCTCCGCCACTGCCGTCGGCATCATCGAGCGCCCCCGACTATCGGCCGAGACGGCTAGCTCGGGGAGGGGATGGCTATGGCGCGTCCGTCGACATCGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTGACTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTATAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCGGTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAACATTTGAA ] [+] EMBL CB657186 [ CTCATCCCACCCTCTCCCTCTCCCGCTGCGTCTGCCTCCCCCTCGCGCCGCCGTCGTCGCCTCCGCCTTCCCCTCGCGCCCCCGCCTCCGCCTTGCAACGTAGCCATCGTCGTCCCCGTCGGCTCGCGCTGCCGCCTCCACCTCCCCCGCCGCTGCCGCCGCCGTCGTCGCGTTGTCGTCTCCGAGCGCCTCCGCCTCCCGCCTCGCGCCGCCGCCGAGCGCAGCCATCCCCGTCTCCGCCACTGCCGTCGGCATCATCGAGCGCCCCCGACTAGCGGCCGAGACGGCGAGCTCGGGGAGGCGATGGCTAGGGCGCGTCCGTCGACATCGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTAGAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCGTTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGTACATTAACTCCTTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTG ] [-] EMBL CB657187 [ CCCGCATCATAGGTATCTGCAAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTAGAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCGTTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGTACATTAACTCCTTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCAATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAATTCCCGAAGTACACATCGCTTACAATGATTGACAGACTTAGTGTTGTTTTAAATTGAACGCTTGTT] consensusID : consensus_10217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 751 fasta sequence [GACCACATCGAGCGAGCCGCCGAGCCGGACTCCTCCTCGAATCGAATCGAAACGCCCCCGATTTGAAGCAGCAAAAAGATATCCGAAATCGAATCGAGTCGAGTACTCGAGTGACGCCTTCGCCTCGGGTGTCCAGGAATAGCTCGAGCTTCCGCCACGCCACGCGCGAGGGAAGGAGCGGGTCGCGCGGGGGAGGGGGGGCATGGGATCGGAGGGGCGGANTGGAGCGGGGCGGCGGCGGTGGGGGGCGGCGTGGAAGGGGAGGCGGCGATCGCGGCGGTGGTGGCGCCTNCGCCGGGGGACGTGCCGGCGTCGGGCGCGTCCGTGGACATAGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGGGGGTGGTCATCGCTGGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCATCACGAATATGTTGCTGAANGTGTCCGCAGAAGATGGCAAGGGTAACAAGTCTTCTGTGACAGTTCGTTTGTATGGCCCAAATACAGACTTGGTGATTGATCGGAAGAGGGAATTGCAGGCTATACCACATCTCTCAGCTGCAGGGTTTGGGGCTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGAACATTAACTCCTTCAGACATGAAGGAACCTAGAATAGCAGCTGAAGATTGCCAAAGAGATTCGCAGATTCCATCAAGTTGATATACCAGGATCA] [+] EMBL AU062514 [GACCACATCGAGCGAGCCGCCGAGCCGGACTCCTCCTCGAATCGAATCGAAACGCCCCCGATTTGAAGCAGCAAAAAGATATCCGAAATCGAATCGAGTCGAGTACTCGAGTGACGCCTTCGCCTCGGGTGTCCAGGAATAGCTCGAGCTTCCGCCACGCCACGCGCGAGGGAAGGAGCGGGTCGCGCGGGGGAGGGGGGGCATGGGATCGGAGGGGCGGANTGGAGCGGGGCGGCGGCGGTGGGGGGCGGCGTGGAAGGGGAGGCGGCGATCGCGGCGGTGGTGGCGCCTNCGCCGGGGGA ] [+] EMBL AU163603 [ TGACGCCTTCGCCTCGGGTGTCCAGGAATAGCTCGAGCTTCCGCCACGCCACGCGCGAGGGAAGGAGCGGGTCGCGCGGGGGAGGGGGGGCATGGGATCGGAGGGGCGGACTGGAGCGGGGCGGCGGCGGTGGGGGGCGGCGTGGAAGGGGAGGCGGCGATCGCGGCGGTGGTGGCGCCTGCG CGGGGGACGTGCCGGCGTCGGGCGCGTCCGTGGACATAGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGTATCTGCAAGGAATTGGTGAGGGGGTGGTCATCGCTGGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCATCACGAATATGTTGCTGAANGTGTCCGCAG ] [+] EMBL AU030345 [ TGGTCATCGCTGGACAGCTCGCGCTTCTCGATCGAGACGGTGTCTGGCGGCATCACGAATATGTTGCTGAAGGTGTCCGCAGAAGATGGCAAGGGTAACAAGTCTTCTGTGACAGTTCGTTTGTATGGCCCAAATACAGACTTGGTGATTGATCGGAAGAGGGAATTGCAGGCTATACCACATCTCTCAGCTGCAGGGTTTGGGGCTCAGCTACTTGGAACATTTGAAAATGGAATGGTCCAGTCATTCATCTATGCACGAACATTAACTCCTTCAGACATGAAGGAACCTAGAATAGCAGCTGAAGATTGCCAAAGAGATTCGCAGATTCCATCAAGTTGATATACCAGGATCA] consensusID : consensus_10217#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence [CCTTCAGGCAATCATATTGCTGTTATTCGTGGATGGGGTGGGCTCTTTCTCACTGTTATATTGTCTAATATCATCTTTCTCTTTTTTCATTTTTTGTCCATTGTGAATTCAGACAAAAAAAATTCAAACAAGGCCTTAATTTTTATGATAAATTTTCATTAGATTAATTAGGACTTTCAAAAGGATATAAATCAACCTATAGTATTGGAATTGCGTAAGGCTTTCTTTACAGTCGTGTGATTCGTCACGTTTGTTGCTTGCTGTGGCCATACAAAGATATCCGTCTTGTGTTCTGATAGATGTATTGACATCAATATTGTTATGTTATCAATTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCAATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAA] [+] EMBL AF358774 [CCTTCAGGCAATCATATTGCTGTTATTCGTGGATGGGGTGGGCTCTTTCTCACTGTTATATTGTCTAATATCATCTTTCTCTTTTTTCATTTTTTGTCCATTGTGAATTCAGACAAAAAAAATTCAAACAAGGCCTTAATTTTTATGATAAATTTTCATTAGATTAATTAGGACTTTCAAAAGGATATAAATCAACCTATAGTATTGGAATTGCGTAAGGCTTTCTTTACAGTCGTGTGATTCGTCACGTTTGTTGCTTGCTGTGGCCATACAAAGATATCCGTCTTGTGTTCTGATAGATGTATTGACATCAATATTGTTATGTTATCAATTCAGCAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCAATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10217#0 GCCACTCGCCGCCGCCTCCTGCCCCTCGCGCCCCCCGGTCGCGCCCACCTCTCCGCCGCG 60 consensus_10217#2 ------------------------------------------------------------ consensus_10217#1 ------------------------------------------------------------ consensus_10217#0 GCCGCGTCCACCTCCCCCAAAAAACCCTAGCCGCCGCCACCTCTCATCCCACCCTCTCCC 120 consensus_10217#2 ------------------------------------------------------------ consensus_10217#1 ------------------------------------------------------------ consensus_10217#0 TCTCCCGCTGCGTCTGCCTCCCCCTCGCGCCGCCGTCGTCGCCTCCGCCTTCCCCTCGCG 180 consensus_10217#2 ------------------------------------------------------------ consensus_10217#1 ------------------------------------------------------------ consensus_10217#0 CCCGCGCCTCCGCCTTGCAACGTAGCCATCGTCGTCTCCGTCGGCTCGCGCTGCCGCCTC 240 consensus_10217#2 ------------------------------------------------------------ consensus_10217#1 ------------------------------------------------------------ consensus_10217#0 CACCTCCCCCGCCGGTGCCGCCGCCGTCGTCGCGTTGTCGTCTCCGAGCGCCTCCGCCTC 300 consensus_10217#2 ------------------------------------------------------------ consensus_10217#1 ------------------------------------------------------------ consensus_10217#0 CCGCCTCGCGCCGCCGCCGAGCGCAGCCATCCCCGTCTCCGCCACTGCCGTCGGCATCAT 360 consensus_10217#2 ------------------------------------------------------------ consensus_10217#1 ------------------------------------------------------------ consensus_10217#0 CGAGCGCCCCCGACTATCGGCCGAGACGGCTAGCTCGGGGAGGGGATGGCTATGGCGCGT 420 consensus_10217#2 --------------------------------------------------------CCTT 4 consensus_10217#1 ------------------------------------------------GACCACATCGAG 12 consensus_10217#0 CCGTCGA-CATCGCGCTGCCGCTCCCGGAGATGACGCCCCGCATCATAGGT---ATCTGC 476 consensus_10217#2 CAGGCAATCATATTGCTGTTATTCGTGGATGGGGTGGGCTCTTTCTCA--------CTGT 56 consensus_10217#1 CGAGCCGCCGAGCCGGACTCCTCCTCGAATCGAATCGAAACGCCCCCGATTTGAAGCAGC 72 * * * * * * * * * * consensus_10217#0 AAGGAATTGGTGAGAGGACGGTCATCGCTAGACAGCTCGCGCTTCTCGATCGAGACGGTG 536 consensus_10217#2 TAT--ATTGTCTAATA-----TCATC-TTTCTCTTTTTTCATTTTTTGTCCATTGTGAAT 108 consensus_10217#1 AAAAAGATATCCGAAATCGAATCGAGTCGAGTACTCGAGTGACGCCTTCGCCTCGGGTGT 132 * * ** * * consensus_10217#0 TCTGGCGGCAGCATCACGAATATGTTGCTGAGTGTCTCCGTAGAAGATGGCAAGGGCAAC 596 consensus_10217#2 TCAGACAAAAAAAATTCAAACAAGGCCTTAATTTTTATGATAAATTTTCATTAGATTAAT 168 consensus_10217#1 CCAGGAATAGCTCGAGCTTCCGCCACGCCACGCGCGAGGGAAGGAGCGGGTCGCGCGGGG 192 * * * * consensus_10217#0 AAGTCTTCTGTGACTGTTCGTTTGTATGGCCCAAATACAGCCTTGGTGATTGATCGGAAG 656 consensus_10217#2 TAGGACTTTCAAAAGG---ATATAAATCAACC---TATAGTATTGG-AATTG--CGTAAG 219 consensus_10217#1 GAGGGGGGGCATGGGAT-CGGAGGGGCGGANT--GGAGCGGGGCGGCGGCGG--TGGGGG 247 ** * * ** * * * consensus_10217#0 AAGGAAATGCAGGCTATACCACATCTCTCAGCTCCAGGGTTTGGGGTCAGCTACTTGGAA 716 consensus_10217#2 GCTTTCTTTACAGTCGTGTGA--TTCGTCACGTTTGTTGCTTGCTGTGGCCATACAAAGA 277 consensus_10217#1 GCGGCGTGGAAGGGGAGGCGGCGATCGCGGCGGTGGTGGCGC-CTNCGCCGGGGGACGTG 306 * * consensus_10217#0 CATTTGAAA-ATGGAATGGTCCAGTCATT--CATCTATGCACGTACATTAACTCCTTCAG 773 consensus_10217#2 TATCCGTCTTGTGTTCTGATAGATGTATTGACATCAATATTGTTATGTTATCAA-TTCAG 336 consensus_10217#1 CCGGCGTCGGGCGCGTCCGTGGACATAGCGCTGCCGCTCCCGG-AGATGACGCCCCGCAT 365 * * * * * * * * * * ** consensus_10217#0 CAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGC- 832 consensus_10217#2 CAAGGATGTAAATGGAAAAGGTTTCAGGGCCAATGGGAGTGAATCATCGAATAGACAGC- 395 consensus_10217#1 CATAGGTAT--CTGCAAGGAATT----GGTGAGGGGGTGGTCATCGCTGGACAGCTCGCG 419 ** * * * ** ** ** ** * *** * *** * * ** ** consensus_10217#0 --CAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAA 890 consensus_10217#2 --CAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACAAGAGGTGCTTGAA 453 consensus_10217#1 CTTCTCGATCGAGACGGTGTCTGGCGGCATCACGAATATG--TTGCTGAANGTGTCCGCA 477 * * * * ** * * * ** * ** * * *** * * consensus_10217#0 TGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACA 950 consensus_10217#2 TGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACA 513 consensus_10217#1 GAAGATGGCAAGGGTA---ACAAGTCTTCTGTGACAGTTCGTT--TGTATGGCCCAAATA 532 * ** *** ** * ** * ** * * ** * * * * * * consensus_10217#0 TATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACA-ACGGGAGTCAAGAGTTCGG 1009 consensus_10217#2 TATACCCCTACAGTAATCATGGGAAAGCTATTATCTGACA-ACGGGAGTCAAGAGTTCGG 572 consensus_10217#1 CAGACTTGGTGATTGATCG-GAAGAGGGAATTGCAGGCTATACCACATCTCTCAGCTGCA 591 * ** * * *** * * * *** * * ** * ** * consensus_10217#0 TGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGT 1069 consensus_10217#2 TGATTTTAAGCTCGTTATACATAGAATGCTGTCTGTATCTTTATGAAAAAAGAATGCTGT 632 consensus_10217#1 GGGTTTGGGGCTCAGC-TACTTGGAACAT--TTGAAAATGGAATGGTCCAGTCATTCATC 648 * *** **** *** * *** * * *** * ** * consensus_10217#0 TATGTCC--ATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCA 1127 consensus_10217#2 TATGTCC--ATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAGCAGATCAGCA 690 consensus_10217#1 TATGCACGAACATTAACTCCTTCAGACATG-AAGGAAC---CTAGAATAGCAGCTGAAGA 704 **** * * *** * * ** * *** ** ** ** ******* * * * consensus_10217#0 ATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAATTCCCGAAGTACA 1187 consensus_10217#2 ATGCTTTAGGCTTTTCCATGCTGCTGTAATGTAAAATCATTAGGAAA------------- 737 consensus_10217#1 TTGCCAAAGAGATTCGCA-GATTCCATCAAGTTGATATACCAGGATCA------------ 751 *** ** ** ** * * * * * ** * * **** consensus_10217#0 CATCGCTTACAATGATTGACAGACTTAGTGTTGTTTTAAATTGAACGCTTGTT 1240 consensus_10217#2 ----------------------------------------------------- consensus_10217#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||