|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1321 fasta sequence
[GTCACGGACACCACCCAGTCCCCTCCCCACACCACGCGCCGCCCAAAACCTCCGCCGCGTTTCGCACCACCACCACCGCCGCCGACCATGGCCTCCTTCTTCGCCGACGACGGCGCCGACGAGCTCCCCCGCACCGCCTCCCACCCCTTCGACGCCGACGACGACGCCGCGCCCGATGCATCAGGAGGCGCCGCCGCCGACGACACCGGATACGGCGGCTACGCCTCCTTCGTCGACGGCGGCGTAGAGGATGTGGAGGAGGAGGAGGAGGAGATCGCCGTGGAGTCCGAGGGGGTCCCGATCGGCCACGTCTCCGGAGGGTTCTCGCCCTCGCCCTTCTCCCCCGACCCGGAGCTGGACGGCGGCGACGGCCCTATCCTCCCGCCGCCGGCCCAGATGGGGGCGGAGGAGGGGATCCTCCTCCGCGAGTGGCGCAGGCAAAATGCTATAGTTCTTGAGGAAAAAGAGCGGAAGGAGAAGGAGCTACGGGCCCAGATACTTGCTGAAGCCGAAGAGTTTAAGAAGGCTTTCTATGAGAAGAGGATACAGAACTGTGAGACAAACAAGGTCCATAACAGAGAAAGAGAGAAGATTTTCGTAGCTGGCCAGGAGAAATTCCATGCCGAAGCAGACAAGCAGTACTGGAAGTCGATATCGGAGCTCATCCCACATGAAATAGCTACCATTGAGAAGCGGGGAAAGAAGGACAAGGACAAGAAGCCATCCATCACAGTCATTCAGGGCCCTAAGCCTGGCAAGCCGACAGACCTCTCACGAATGCGCCAGATCTTAGTGAAGCTGAAGCACGCTCCTCCACCGCACATGATGCAACCTCCACCAGCGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGCCCCAGCAAATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCCTGCGGAAGCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCGAACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTCTATCCTGTATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTCAGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTA-CAAGTAGCTT-CAGTGGATA-CTTTGTGATCATAAGTTCAGAACTGAAAGCGTAACTGAATGATGGATATCAGACACGATTTCTTCCC-TGTGGATACTCTGTGATCATAAGTTCAGAACTGAAAGCGCAACTGAGT]
[+] EMBL AK103034 [GTCACGGACACCACCCAGTCCCCTCCCCACACCACGCGCCGCCCAAAACCTCCGCCGCGTTTCGCACCACCACCACCGCCGCCGACCATGGCCTCCTTCTTCGCCGACGACGGCGCCGACGAGCTCCCCCGCACCGCCTCCCACCCCTTCGACGCCGACGACGACGCCGCGCCCGATGCATCAGGAGGCGCCGCCGCCGACGACACCGGATACGGCGGCTACGCCTCCTTCGTCGACGGCGGCGTAGAGGATGTGGAGGAGGAGGAGGAGGAGATCGCCGTGGAGTCCGAGGGGGTCCCGATCGGCCACGTCTCCGGAGGGTTCTCGCCCTCGCCCTTCTCCCCCGACCCGGAGCTGGACGGCGGCGACGGCCCTATCCTCCCGCCGCCGGCCCAGATGGGGGCGGAGGAGGGGATCCTCCTCCGCGAGTGGCGCAGGCAAAATGCTATAGTTCTTGAGGAAAAAGAGCGGAAGGAGAAGGAGCTACGGGCCCAGATACTTGCTGAAGCCGAAGAGTTTAAGAAGGCTTTCTATGAGAAGAGGATACAGAACTGTGAGACAAACAAGGTCCATAACAGAGAAAGAGAGAAGATTTTCGTAGCTGGCCAGGAGAAATTCCATGCCGAAGCAGACAAGCAGTACTGGAAGTCGATATCGGAGCTCATCCCACATGAAATAGCTACCATTGAGAAGCGGGGAAAGAAGGACAAGGACAAGAAGCCATCCATCACAGTCATTCAGGGCCCTAAGCCTGGCAAGCCGACAGACCTCTCACGAATGCGCCAGATCTTAGTGAAGCTGAAGCACGCTCCTCCACCGCACATGATGCAACCTCCACCAGCGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGCCCCAGCAAATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCCTGCGGAAGCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCGAACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTCTATCCTGTATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTCAGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTA CAAGTAGCTT CAGTGGATA CTTTGTGATCATAAGTTCAGAACTGAAAGCGTAACTGAATGATGGATATCAGACACGATTTCTTCCC TGTGGATACTCTGTGATCATAAGTTCAGAACTGAAAGCGCAACTGAGT]
[+] EMBL CB681635 [ cnGTTTCGCACCACCACCACCGCCGCCGACCATGGCCTCCTTCTTCGCCGACGACGGCGCCGACGAGCTCCCCCGCACCGCCTCCCACCCCTTCGACGCCGACGACGACGCCGCGCCCGATGCATCAGGAGGCGCCGCCGCCGACGACACCGGATACGGCGGCTACGCCTCCTTCGTCGACGGCGGCGTAGAGGATGTGGAGGAGGAGGAGGAGGAGATCGCCGTGGAGTCCGAGGGGGTCCCGATCGGCCACGTCTCCGGAGGGTTCTCGCCCTCGCCCTTCTCCCCCGACCCGGAGCTGGACGGCGGCGACGGCCCTATCCTCCCGCCGCCGGCCCAGATGGGGG ]
[+] EMBL CA763785 [ AGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCGAACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTCTATCCTGTATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTCAGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTA CAAGTAGCTT CAGTGGATA CTTTGTGATCATAAGTTCAGAACTGAAAGCGTAACTGAATGATGGATATCAGACACGATTTCT ]
[+] EMBL BM037896 [ TTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTCAGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTACCAAGTAGCTTCCAGTGGATACCTTTGTGATCATAAGTTCAGAACTGAAAGCGTAACTGAATGATGGATATCAGACACGATTTCTTCCCNCGTGGAaaaaaa ]
consensusID : consensus_10234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 825 fasta sequence
[GCTATAGTTCTTGAGGAAAAAGAGCGGAAGGAGAAGGAGCTACGGGCCCAGATACTTGCTGAAGCCGAAGAGTTTAAGAAGGCTTTCTATGAGAAGAGGATACAGAACTGTGAGACAAACAAGGTCCATAACAGAGAAAGAGAGAAGATTTTCGTAGCTGGCCAGGAGAAATTCCATGCCGAAGCAGACAAGCAGTACTGGAAGTCGATATCGGAGCTCATCCCACATGAAATAGCTACCATTGAGAAGCGGGGAAAGAAGGACAAGGACAAGAAGCCATCCATCACAGTCATTCAGGGCCCTAAGCCTGGCAAGCCGACAGACCTCTCACGAATGCGCCAGATCTTAGTGAAGCTGAAGCACGCTCCTCCACCGCACATGATGCAACCTCCACCAGCGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGCCCCAGCAAATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCCTGCGGAAGCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCGAACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTCTATCCTGTATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTCAGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTACAAGTAGCTTCAGTGGATACTTTGTGATCATAAGTTCAGAGCTGAAAGCGTAACTGAATGATGGATATCAGAAAAAAAAAGA]
[-] EMBL CB681636 [GCTATAGTTCTTGAGGAAAAAGAGCGGAAGGAGAAGGAGCTACGGGCCCAGATACTTGCTGAAGCCGAAGAGTTTAAGAAGGCTTTCTATGAGAAGAGGATACAGAACTGTGAGACAAACAAGGTCCATAACAGAGAAAGAGAGAAGATTTTCGTAGCTGGCCAGGAGAAATTCCATGCCGAAGCAGACAAGCAGTACTGGAAGTCGATATCGGAGCTCATCCCACATGAAATAGCTACCATTGAGAAGCGGGGAAAGAAGGACAAGGACAAGAAGCCATCCATCACAGTCATTCAGGGCCCTAAGCCTGGCAAGCCGACAGACCTCTCACGAATGCGCCAGATCTTAGTGAAGCTGAAGCACGCTCCTCCACCGCACATGATGCAACCTCCACCAGCGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGCCCCAGCAAATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCCTGCGGAAGCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCGAACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTCTATCCTGTATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTCAGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTACAAGTAGCTTCAGTGGATACTTTGTGATCATAAGTTCAGAGCTGAAAGCGTAACTGAATGATGGATATCAGAAAAAAAAAGA]
[+] EMBL CF305153 [ GAAGCCGAAGAGTTTAAGAAGGCTTTCTATGAGAAGAGGATACAGAACTGTGAGACAAACAAGGTCCATAACAGAGAAAGAGAGAAGATTTTCGTAGCTGGCCAGGAGAAATTCCATGCCGAAGCAGACAAGCAGTACTGGAAGTCGATATCGGAGCTCATCCCACATGAAATAGCTACCATTGAGAAGCGGGGAAAGAAGGACAAGGACAAGAAGCCATCCATCACAGTCATTCAGGGCCCTAAGCCTGGCAAGCCGACAGACCTCTCACGAATGCGCCAGATCTTAGTGAAGCTGAAGCACGCTCCTCCACCGCACATGATGCAACCTCCACCAGCGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGCCCCAGCAAATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCCTGCGGAAGCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCGAACCTTGACTGCAGATA ]
[+] EMBL AU101617 [ CGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGCCCCAGCAAATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCCTGCGGAAGCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCGAACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTCTATCCTGTATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTCAGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTACAAGTAGCTTCAGTGGATACTTTGTGATCATAAGTTCAGAACTGAAAGCGTAACTGAATGATGGATATCAGAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10234#0 GTCACGGACACCACCCAGTCCCCTCCCCACACCACGCGCCGCCCAAAACCTCCGCCGCGT 60
consensus_10234#1 ------------------------------------------------------------
consensus_10234#0 TTCGCACCACCACCACCGCCGCCGACCATGGCCTCCTTCTTCGCCGACGACGGCGCCGAC 120
consensus_10234#1 ------------------------------------------------------------
consensus_10234#0 GAGCTCCCCCGCACCGCCTCCCACCCCTTCGACGCCGACGACGACGCCGCGCCCGATGCA 180
consensus_10234#1 ------------------------------------------------------------
consensus_10234#0 TCAGGAGGCGCCGCCGCCGACGACACCGGATACGGCGGCTACGCCTCCTTCGTCGACGGC 240
consensus_10234#1 ------------------------------------------------------------
consensus_10234#0 GGCGTAGAGGATGTGGAGGAGGAGGAGGAGGAGATCGCCGTGGAGTCCGAGGGGGTCCCG 300
consensus_10234#1 ------------------------------------------------------------
consensus_10234#0 ATCGGCCACGTCTCCGGAGGGTTCTCGCCCTCGCCCTTCTCCCCCGACCCGGAGCTGGAC 360
consensus_10234#1 ------------------------------------------------------------
consensus_10234#0 GGCGGCGACGGCCCTATCCTCCCGCCGCCGGCCCAGATGGGGGCGGAGGAGGGGATCCTC 420
consensus_10234#1 ------------------------------------------------------------
consensus_10234#0 CTCCGCGAGTGGCGCAGGCAAAATGCTATAGTTCTTGAGGAAAAAGAGCGGAAGGAGAAG 480
consensus_10234#1 ------------------------GCTATAGTTCTTGAGGAAAAAGAGCGGAAGGAGAAG 36
************************************
consensus_10234#0 GAGCTACGGGCCCAGATACTTGCTGAAGCCGAAGAGTTTAAGAAGGCTTTCTATGAGAAG 540
consensus_10234#1 GAGCTACGGGCCCAGATACTTGCTGAAGCCGAAGAGTTTAAGAAGGCTTTCTATGAGAAG 96
************************************************************
consensus_10234#0 AGGATACAGAACTGTGAGACAAACAAGGTCCATAACAGAGAAAGAGAGAAGATTTTCGTA 600
consensus_10234#1 AGGATACAGAACTGTGAGACAAACAAGGTCCATAACAGAGAAAGAGAGAAGATTTTCGTA 156
************************************************************
consensus_10234#0 GCTGGCCAGGAGAAATTCCATGCCGAAGCAGACAAGCAGTACTGGAAGTCGATATCGGAG 660
consensus_10234#1 GCTGGCCAGGAGAAATTCCATGCCGAAGCAGACAAGCAGTACTGGAAGTCGATATCGGAG 216
************************************************************
consensus_10234#0 CTCATCCCACATGAAATAGCTACCATTGAGAAGCGGGGAAAGAAGGACAAGGACAAGAAG 720
consensus_10234#1 CTCATCCCACATGAAATAGCTACCATTGAGAAGCGGGGAAAGAAGGACAAGGACAAGAAG 276
************************************************************
consensus_10234#0 CCATCCATCACAGTCATTCAGGGCCCTAAGCCTGGCAAGCCGACAGACCTCTCACGAATG 780
consensus_10234#1 CCATCCATCACAGTCATTCAGGGCCCTAAGCCTGGCAAGCCGACAGACCTCTCACGAATG 336
************************************************************
consensus_10234#0 CGCCAGATCTTAGTGAAGCTGAAGCACGCTCCTCCACCGCACATGATGCAACCTCCACCA 840
consensus_10234#1 CGCCAGATCTTAGTGAAGCTGAAGCACGCTCCTCCACCGCACATGATGCAACCTCCACCA 396
************************************************************
consensus_10234#0 GCGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGCCCCAGCA 900
consensus_10234#1 GCGTCTGCTGCTAAAGACGGCGCAAAGGATGGTGCTAAAGACGGCACACCAGCCCCAGCA 456
************************************************************
consensus_10234#0 AATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCCTGCGGAA 960
consensus_10234#1 AATGGAACCAAGAAGCCTGCAGAGAGCAAAGAGAAACCTGCCAACGGATCGCCTGCGGAA 516
************************************************************
consensus_10234#0 GCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCG 1020
consensus_10234#1 GCAGAGAAGGAGCAGCCTGCAGCATCGGAGTAACTTATGGTAGCTCTACAGGAACGCCCG 576
************************************************************
consensus_10234#0 AACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTCTATCCTG 1080
consensus_10234#1 AACCTTGACTGCAGATATGGAAATGCATTTTATTTCTAATCCCTGGATCTGTCTATCCTG 636
************************************************************
consensus_10234#0 TATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTC 1140
consensus_10234#1 TATTTATCTTTTTATGGAGATTTGCGTCAGGATGGCTATGTATCAGCTCTCAGAACATTC 696
************************************************************
consensus_10234#0 AGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTACAAGTAGCTTCAG 1200
consensus_10234#1 AGCTTAGTATCACAGCAATTGTACTCTTTACTTGTTTTCACCTGGTACAAGTAGCTTCAG 756
************************************************************
consensus_10234#0 TGGATACTTTGTGATCATAAGTTCAGAACTGAAAGCGTAACTGAATGATGGATATCAGAC 1260
consensus_10234#1 TGGATACTTTGTGATCATAAGTTCAGAGCTGAAAGCGTAACTGAATGATGGATATCAGAA 816
*************************** *******************************
consensus_10234#0 ACGATTTCTTCCCTGTGGATACTCTGTGATCATAAGTTCAGAACTGAAAGCGCAACTGAG 1320
consensus_10234#1 AAAAAAAGA--------------------------------------------------- 825
* *
consensus_10234#0 T 1321
consensus_10234#1 -
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||