These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1198 fasta sequence [ACAAGCATGTGCATTCCCTTCATTCATGATACAGAAACAAAGTTCTGGATACAGAAACAGAGTTCTGCATAACAAATCTATGGCAAGTGATGTATGTTATTTCGATCAACACCGTATGGCACACTTATTGTTCAACTGGACACCAAACAATGTTTTATGTCAGCAATTTACAGATAAATCTGTGACGAACAAATACGACGACGATCTGAGGATCATCAGGCTGTGCACATTACATATAGAAGAAGAAAAACCAATAGGGGGAAATCAATGGCGACTGGACGATCGTGTGGAGTTTGGACTGCACAGTGGCGTGGGAGGATTCAACTTCTTCTAGGCTCAAGCCTGGGCAAGCTTCTTCACTATGGAGGCCATGTACTTGCCCTGGTGCTCGGCTAGGGCGAGCTCCGTCTCGCTGGGCTGTCTGCCGCCATCACCAGCGAAGACGCCAGCGCCATAGGGGCTGCCTCCTCTGATCTCATCCATCTTGAACATGCCTGACCCGAAGGTGTAGCCAATCGGGACAAAGAGCATTCCATGGTGCACTATCTGGGTGATTGCCGTCCAAGCGGTGGTCTCCTGGCCGCCTCCCTGCGTGCCGGTGCTGACGAAGAACCCGGCGGGCTTCCCGGCGAGCTTCTGCTTCTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCCTTCATCTGCGCGGCCATGGCGCCGTACCTCGTCGGGAACCCGAACAGCACCCCGTCGGCCTCCTCCAGGTCCGCCGCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTCTCCAGCACGCCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCCTCCACCCCGTCCACCGCCGCGACGCCCGCCGCCGC-CCGCCGCGCC-AGCGCCTCCACGTGCCCGTACATCGAGTAGAACACGATGTACAGCCGCAGCCTCCGCCGCCCCCCGGCCGCCTCCCCCGACGCCTCCGCCTCGGGGGCGTCGCGCGGCGCCGACGACGACGACGGCGCGCCGGCGACGGTGCTGGCCGGCGCTGCCGCTTCTTGCTGGGGACGCAGCCGCCGCCCTTCCCCATCACCGGCCGGTCAAACCCAACTCCGCCGCGGCGGCGCCCCCCAAGAAAGCAAGCTCGGGAGTTGGGCCGNCGCGCTGCTCGTGCTCCGTCGCGTCTCGGGGAGGTGGAGT] [+] EMBL BI306066 [ACAAGCATGTGCATTCCCTTCATTCATGATACAGAAACAAAGTTCTGGATACAGAAACAGAGTTCTGCATAACAAATCTATGGCAAGTGATGTATGTTATTTCGATCAACACCGTATGGCACACTTATTGTTCAACTGGACACCAAACAATGTTTTATGTCAGCAATTTACAGATAAATCTGTGACGAACAAATACGACGACGATCTGAGGATCATCAGGCTGTGCACATTACATATAGAAGAAGAAAAACCAATAGGGGGAAATCAATGGCGACTGGACGATCGTGTGGAGTTTGGACTGCACAGTGGCGTGGGAGGATTCAACTTCTTCTAGGCTCAAGCCTGGGCAAGCTTCTTCACTATGGAGGCCATGTACTTGCCCTGGTGCTCGGCTAGGGCGAGCTCCGTCTCGCTGGGCTGTCTGCCGCCATCACCAGCGAAGACGCCAGCGCCATAGGGGCTGCCTCCTCTGATCTCATCCATCTTGAACATGCCTGACCCGAAGGTGTAGCCAATCGGGACAAAGAGCATTCCATGGTGCACTATCTGGGTGATTGCCGTCCAAGCGGTGGTCTCCTGGCCGCCTCCCTGCGTGCCGGTGCTGACGAAGAACCCGGCGGGCTTCCCGGCGAGCTTCTGCTTCTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCC ] [-] EMBL CA758050 [ tttttttTATGGCAAGTGATGTATGTTATTTCGATCAACACCGTATGGCACACTTATTGTTCAACTGGACACCAAACAATGTTTTATGTCAGCAATTTACAGATAAATCTGTGACGAACAAATACGACGACGATCTGAGGATCATCAGGCTGTGCACATTACATATAGAAGAAGAAAAACCAATAGGGGGAAATCAATGGCGACTGGACGATCGTGTGGAGTTTGGACTGCACAGTGGCGTGGGAGGATTCAACTTCTTCTAGGCTCAAGCCTGGGCAAGCTTCTTCACTATGGAGGCCATGTACTTGCCCTGGTGCTCGGCTAGGGCGAGCTCCGTCTCGCTGGGCTGTCTGCCGCCATCACCAGCGAAGACGCCAGCG ] [-] EMBL AU172965 [ GCTTTCCGGCGAGCTTCTGCTTCTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCCTTCATCTGCGCGGCCATGGCGCCGTACCTCGTCGGGAACCCGAACAGCACCCCGTCGGCCTCCTCCAGGTCCGCCGCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTCTCCAGCACGCCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCCTCCACCCCGTCCACCGCCGCGACGCCCGCCGCCGC CCGCCGCGCC AGCGCCTCCACGTGCCCGTACATCGAGTAGAACACGATGTACAGCCGCAGCCTCCGCCGCCCCCCGGCCGCCTCCCCCGACGCCTCCGCCTCGGGGGCGTCGCGCGGCGCCGACGACGACGACGGCGCGCCGGCGACGGTGCTGGCCGGCG ] [-] EMBL AU032065 [ CCCCGTCCACCGCCGCNACGCCCGCCGCCGCTNCGCCGCGCCAAGCGCCTCCACGTGCCCGTACATCGAGTAGAACACGATGTACAGCCGCAGCCTCCGCCGCCCCCCGGCCGCCTCCCCCGACGCCTCCGCCTCGGGGACGTCGCGCGGCGCCGACGACGACGACGGCGCGCCGGCGACGGTGCTGGCCGGCGCTGCCGCTTCTTGCTGGGGACGCAGCCGCCGCCCTTCCCCATCACCGGCCGGTCAAACCCAACTCCGCCGCGGCGGCGCCCCCCAAGAAAGCAAGCTCGGGAGTTGGGCCGNCGCGCTGCTCGTGCTCCGTCGCGTCTCGGGGAGGTGGAGT] consensusID : consensus_10243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [TTTTTTTTTTATGGCAAGTGATGTATGTTATGGGATCAACACCGTATGGACACTTAGTGTTCAACTGGACACCAAACAATGTTTTATGTCAACAATTTACAGATAAATCTGTGACGAACAAATACGAGACGATCTGAGGATCATCAGGGGTGGGGCATTACATTATTGAAGAAGAAAAAACCAAATAGGGGGGGAAATCAATTGGNGACTGGACGATCGTGTGGAGTTTGGACTGACCAGTGGCGTCCGGTGGGAGGGATTTCCAACTTTCTTCTGGGGCTCAAGCCTNGGGCAAGCTTTCTTCACTATGGGAGGGCATGTACTTTGCCCTGGTGCTCGGGTAAGGCGGAAGCTCCGTCTCGCTTGGGGCTGTCTGGTGCATCACCAGCGAAGACGCCAGCGCCATAGGGGGGTTGGCTCCTCTGATCTCATCCATCTTGAACATGCCT] [-] EMBL BI805384 [TTTTTTTTTTATGGCAAGTGATGTATGTTATGGGATCAACACCGTATGGACACTTAGTGTTCAACTGGACACCAAACAATGTTTTATGTCAACAATTTACAGATAAATCTGTGACGAACAAATACGAGACGATCTGAGGATCATCAGGGGTGGGGCATTACATTATTGAAGAAGAAAAAACCAAATAGGGGGGGAAATCAATTGGNGACTGGACGATCGTGTGGAGTTTGGACTGACCAGTGGCGTCCGGTGGGAGGGATTTCCAACTTTCTTCTGGGGCTCAAGCCTNGGGCAAGCTTTCTTCACTATGGGAGGGCATGTACTTTGCCCTGGTGCTCGGGTAAGGCGGAAGCTCCGTCTCGCTTGGGGCTGTCTGGTGCATCACCAGCGAAGACGCCAGCGCCATAGGGGGGTTGGCTCCTCTGATCTCATCCATCTTGAACATGCCT] consensusID : consensus_10243#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [TTCATGTGCATATNNGGGNGATTGCGTCAAGCGTGTTATGCGCTCCTGGTGCCGGTGGTGAAGAAAGAACCCGGCGGGGTTCCCGGNGAGTTTNTGTTNTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCNTTCATTTGCGCGGCCATGGAGCNGTACTTNGTCGGGAACCCGAACAGCACCCCGTCGGCTTCNTNCAGGTCCGCCGCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTNTCCAGCACGCCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCNTCCACCCCGTCCACCGCCGGGACGCCCGCCGCCGCCCGCCGCGCCAGCGCCTCCACGTGCCCGTACATCGGTAGAACACGATGTACAGCCGCAGCTTCCGCCGCCCCCCGGCCGCNTCCCCCGACGC] [-] EMBL AA751926 [TTCATGTGCATATNNGGGNGATTGCGTCAAGCGTGTTATGCGCTCCTGGTGCCGGTGGTGAAGAAAGAACCCGGCGGGGTTCCCGGNGAGTTTNTGTTNTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCNTTCATTTGCGCGGCCATGGAGCNGTACTTNGTCGGGAACCCGAACAGCACCCCGTCGGCTTCNTNCAGGTCCGCCGCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTNTCCAGCACGCCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCNTCCACCCCGTCCACCGCCGGGACGCCCGCCGCCGCCCGCCGCGCCAGCGCCTCCACGTGCCCGTACATCGGTAGAACACGATGTACAGCCGCAGCTTCCGCCGCCCCCCGGCCGCNTCCCCCGACGC] consensusID : consensus_10243#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 122 fasta sequence [ACAGATTTATCTGTAAATTGTTGACATAAAACATTGTTTGGTGTCCAGTTGAACACTAAGTGTGCCATACGGTGTTGATCGAAATNACATACATCNCTTGNTNTAAAAAAAANNAAAAAANA] [+] EMBL AU058378 [ACAGATTTATCTGTAAATTGTTGACATAAAACATTGTTTGGTGTCCAGTTGAACACTAAGTGTGCCATACGGTGTTGATCGAAATNACATACATCNCTTGNTNTAAAAAAAANNAAAAAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 ACAAGCATGTGCATTCCCTTCATTCATGATACAGAAACAAAGTTCTGGATACAGAAACAG 60 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ---------TTTTTTTTTTATGGCAAGTGATGTATGTTATGG-GATCAACACCGTATG-G 49 consensus_10243#3 ---------------------------------------------------------A-C 2 consensus_10243#0 AGTTCTGCATAACAAATCTATGGCAAGTGATGTATGTTATTTCGATCAACACCGTATGGC 120 consensus_10243#2 ------------------TTCATGTGCATATNNGGGNGATTGCGTCAAGCGTGTTATG-C 41 consensus_10243#1 ACACTTAGTGTTCAACTG--GACACCAAACAATGTTTTATGTCAA-CAATTTACAGATAA 106 consensus_10243#3 AGATTTATCTGTAAATTGTTGACATAAAACATTGTTTGGTGTC---CAGTTGAACACTAA 59 consensus_10243#0 ACACTTATTGTTCAACTG--GACACCAAACAATGTTTTATGTCAG-CAATTTACAGATAA 177 consensus_10243#2 GCTCCTGGT-GCCGGTGGTGAAGAAAGAACCCGGCGGGGTTCCCGGNGAGTTTNTGTTNT 100 * * * * *** * * * * * consensus_10243#1 ATCTGTGACGAACAAATACGA-GACGATCTGAGGATCATCAGGGGTGGGGCATTACATTA 165 consensus_10243#3 GT--GTGCCATACG-----GT-GTTGATCGAAATNACAT----------ACATCNC-TTG 100 consensus_10243#0 ATCTGTGACGAACAAATACGACGACGATCTGAGGATCATCAGGCTGTGCACATTAC---- 233 consensus_10243#2 CCCAGAGGGAGCCGGTGGAGTCGAAGAACGCNTTCATTTGCGCGGCCATGGAGCNG--TA 158 * * * * * ** * * * consensus_10243#1 TTGAAGAAGAAAAAACCAAATAGGGGGGGAAATCAATTGGNGACTGGACGATCGTGTGGA 225 consensus_10243#3 NTNTAAAAAAAANNAAAAAANA-------------------------------------- 122 consensus_10243#0 ATATAGAAGAAGAAA--AACCAATAGGGGGAAATCAATGGCGACTGGACGATCGTGTGGA 291 consensus_10243#2 CTTNGTCGGGAACCCGAACAGCACCCCGTCGGCTTCNTNCAGGTCCGCCGCCGCCGCGAT 218 * * * consensus_10243#1 GTTTGGACTGACCAGTGGCGTCCGGTGGGAGGGATTTCCAACTTTCTTCTGGGGCTCAAG 285 consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 GTTTGGACTGCACAGTGGCGT--------GGGAGGATTCAACTTCTTCT--AGGCTCAAG 341 consensus_10243#2 GACCGGGACGGCGGGGTCCTT-----GGCCGGCGCCTGCATCTTNTCCAGCACGCCCGGC 273 consensus_10243#1 CCTNGGGCAAGCTTTCTTCACTATGGGAGGGCATGTACTTTGCCCTGGTGCTCGGGTAAG 345 consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 CCTGGG--CAAGCTTCTTCACTATGG-AGGCCATGTACTT-GCCCTGGTGCTCGGCTAGG 397 consensus_10243#2 GGGAGCGTCTCGGGGACGCGCCGCAGCACCGCNTCCACCCCGTCC-ACCGCCGGGACGCC 332 consensus_10243#1 GCGGAAGCTCCGTCTCGCTTGGGGCTGTCTGGTGC-ATCACCAGCGAAGACGCCAGCGCC 404 consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 GCG--AGCTCCGTCTCGCT--GGGCTGTCTGCCGCCATCACCAGCGAAGACGCCAGCGCC 453 consensus_10243#2 CGCCGCCGCCCGCCGCGCCAGCGCCTCCACGTGCCCGTACATCGGTAGAACACGATGTAC 392 consensus_10243#1 ATAGGGGGGTTGGCTCCTCTGATCTCATCCATCTTGAACATGCCT--------------- 449 consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 ATAGGGG--CTGCCTCCTCTGATCTCATCCATCTTGAACATGCCTGACCCGAAGGTGTAG 511 consensus_10243#2 AGCCGCAGCTTCCGCCGCCCCCCGGCCGCNTCCCCCGACGC------------------- 433 consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 CCAATCGGGACAAAGAGCATTCCATGGTGCACTATCTGGGTGATTGCCGTCCAAGCGGTG 571 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 GTCTCCTGGCCGCCTCCCTGCGTGCCGGTGCTGACGAAGAACCCGGCGGGCTTCCCGGCG 631 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 AGCTTCTGCTTCTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCCTTCATCTGCGCGGCC 691 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 ATGGCGCCGTACCTCGTCGGGAACCCGAACAGCACCCCGTCGGCCTCCTCCAGGTCCGCC 751 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 GCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTCTCCAGCACG 811 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 CCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCCTCCACCCCGTCCACCGCCGCG 871 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 ACGCCCGCCGCCGCCCGCCGCGCCAGCGCCTCCACGTGCCCGTACATCGAGTAGAACACG 931 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 ATGTACAGCCGCAGCCTCCGCCGCCCCCCGGCCGCCTCCCCCGACGCCTCCGCCTCGGGG 991 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 GCGTCGCGCGGCGCCGACGACGACGACGGCGCGCCGGCGACGGTGCTGGCCGGCGCTGCC 1051 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 GCTTCTTGCTGGGGACGCAGCCGCCGCCCTTCCCCATCACCGGCCGGTCAAACCCAACTC 1111 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 ------------------------------------------------------------ consensus_10243#3 ------------------------------------------------------------ consensus_10243#0 CGCCGCGGCGGCGCCCCCCAAGAAAGCAAGCTCGGGAGTTGGGCCGNCGCGCTGCTCGTG 1171 consensus_10243#2 ------------------------------------------------------------ consensus_10243#1 --------------------------- consensus_10243#3 --------------------------- consensus_10243#0 CTCCGTCGCGTCTCGGGGAGGTGGAGT 1198 consensus_10243#2 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||