These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 984 fasta sequence [GCGAAGGTGTCACTGACAGCCATGGCCCACAAGCGCGGCCGTCTTGTTGGTTGGGTGCTTCTCCTCCTCCTCGCCGTGGCTATCGCCGTCGCCGCCGCGGCCACGCCGAGGCAGCTGTTCCTGGTGACCCAGGCGCCGGTCACGCTCACGAACCACCACGGCCAGCTGCTCACGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCTTCACCCCGGCGCAGCGCGCCACCGTCGCTGACTTCTTGCTGTCGATGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGCGGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCGAACGCCGACGTGGTGATGGACGGCATCA-TCATCAGCCTCGCCACGCTGCTCGCCGGGGCGGTGACGAACCCGTACGGCGGCGGGTACTTCCAGGGCCCCACCGAGGCGCCGCTGGAGGCGGTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTGCCGGTGGACGCCGCCACCGGCGC-CAGCTACAACGCCGTCGGGGTCGCCGGCCGGCGGTTCCTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCGATCGATCGATGGACCAAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGTGACGTGGT-GTCTCGTTTCTTTT-GTTTTGTGGATATTTCGT-GGTGAACAAAAAAAATGGAAAAAAAAACAGAATGAAGTGGGGTAATGTAATAAACCTAGGCTTTCGTTGTCATGTTCTGTATATATTGGTAAGGCATTGTTCATGGGTTCGTTGATCGTTGACATCTCAAGCAAGGCCGAAAAAAAAAA] [+] EMBL AK073011 [GCGAAGGTGTCACTGACAGCCATGGCCCACAAGCGCGGCCGTCTTGTTGGTTGGGTGCTTCTCCTCCTCCTCGCCGTGGCTATCGCCGTCGCCGCCGCGGCCACGCCGAGGCAGCTGTTCCTGGTGACCCAGGCGCCGGTCACGCTCACGAACCACCACGGCCAGCTGCTCACGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCTTCACCCCGGCGCAGCGCGCCACCGTCGCTGACTTCTTGCTGTCGATGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGCGGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCGAACGCCGACGTGGTGATGGACGGCATCA TCATCAGCCTCGCCACGCTGCTCGCCGGGGCGGTGACGAACCCGTACGGCGGCGGGTACTTCCAGGGCCCCACCGAGGCGCCGCTGGAGGCGGTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTGCCGGTGGACGCCGCCACCGGCGC CAGCTACAACGCCGTCGGGGTCGCCGGCCGGCGGTTCCTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCGATCGATCGATGGACCAAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGTGACGTGGT GTCTCGTTTCTTTT GTTTTGTGGATATTTCGT GGTGAACAAAAAAAATGGAAAAAAAAACAGAATGAAGTGGGGTAATGTAATAAACCTAGGCTTTCGTT ] [+] EMBL BI805890 [ ggGATG CGGCATCATTCATCA ACTCGCCACGCTGCTCGCCGGGGCGGTGACG ACCCGTAC GC GCGGGTACTT CAGGGCCCCACCGAGGCGCCGCTGGA GCGGTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTGCCGGTGGACGCCGCCACCGGCGC CAGCTACAACGCCGTCGGGGTCGCCGGCCGGCGGTTCCTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTAC AACCCTCTGATGCGATCGATCGATGGACCCAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGTGACGTGGT GTCTCGTTTCTTTT GTTTTGTGGATATTTCGT GGTGAAC AAAAAAATGGAAAAAAAAACAGAATGAAGTGGGGTAATGTAATAAACCTAGGCTTTCGTTGTCATGTTCTGTATATATTGGTAAGGCATTGTTCATGGGTTCGTTGATCGTTGACATCTCAAGCAAGGCCGAAAAAAAAAA] [+] EMBL AU029795 [ AGGGCCCCACCGAGGCGCCGCTGGAGGCGTTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTGCCGGTGGACGCCGCCACCGG GCNCAGCTACAACGCCGTCGGGGTCGCCGGCCGG GGTTCCTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCGATCGATCGATGGACCAAAATGGCTTNGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTTGAGTTACGTTGTGGTCTCGTTTCTTTTGGTTTTGTGGATATTTCGTGGGTGAACAAAAAAAATTGGAAAAAAAACNGAATTAAGTTGGGTAATGTAATAAACCTAAGCTTTCGTTGTAATGTTCTtttaaaaaa ] [-] EMBL D42478 [ TTCCT CTGCCGGCGATGT GGACCCCAAGACC C CAGTGCTCTACTCTCGTGTAGTAGTACTAGTACAAACCCTCTGATGCGATCGATCGAT GA CAAAATGGCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGT ACGTGGT GTCTCGTTTCTTTT G ] [+] EMBL AU108921 [ GCTTGGGCTCGGTGTACGGACGGCTGGGATTAGGGAGTGGAGTGACGTGGT GTCTCGTTTCTTTT GTTTTGTGGATATTTCGT GGTGAACAAAAAAAATGGAAAAAAAAACAGAATGAAGTaaaaaa ] consensusID : consensus_10328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [GTCGGTCGAGTCGNGGNGGGCCACCACGGCAGCGGTACCACCCGGGCAGCCGAGCGGCTCACAGCTCGGCCGCCAGGTGCTCAGACAGCAGTCAGCTCTCCCTCGGCCAGGCGGCTGTCGGAGACCTCCCTCGCCGCGCTGGCCGCGCGCCTCTCCCCGCACCGGGGCTCCATCGCCGTGGTGATAACTGCCCCCGACGTCCTCGTCGACGGCTTCTGCCTCTCCCACTGCGGCCTCCACGCGTCGGCCACCTCAGGCCGCCGCCGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGCGGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCGAACGCCGACG] [+] EMBL AU181641 [GTCGGTCGAGTCGNGGNGGGCCACCACGGCAGCGGTACCACCCGGGCAGCCGAGCGGCTCACAGCTCGGCCGCCAGGTGCTCAGACAGCAGTCAGCTCTCCCTCGGCCAGGCGGCTGTCGGAGACCTCCCTCGCCGCGCTGGCCGCGCGCCTCTCCCCGCACCGGGGCTCCATCGCCGTGGTGATAACTGCCCCCGACGTCCTCGTCGACGGCTTCTGCCTCTCCCACTGCGGCCTCCACGCGTCGGCCACCTCAGGCCGCCGCCGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGCGGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCGAACGCCGACG] consensusID : consensus_10328#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [CAGCCATGGCCCACAAGCGCGGCCGTNTTGTTGGTTGGGTGCTTCTCCTCCTCCTCGCCGTGGCTATCGCCGGCGCCGCCCGGCCACGCCGAGGCAGCTGTTCCTGGTGACCCAGGCGCCGGTNACGCTCACGAACCACCACGGCCAGCTGCTCACGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCTTCACCCCGGCGCANGCGCANCCTGTCGCTGACTTCTTGCTGTCGATGTCGTCGCCGTCGGGCGGCGGAGGCTGCGGCGGTGTCTGGTGGTCCGGNG] [+] EMBL C27449 [CAGCCATGGCCCACAAGCGCGGCCGTNTTGTTGGTTGGGTGCTTCTCCTCCTCCTCGCCGTGGCTATCGCCGGCGCCGCCCGGCCACGCCGAGGCAGCTGTTCCTGGTGACCCAGGCGCCGGTNACGCTCACGAACCACCACGGCCAGCTGCTCACGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCTTCACCCCGGCGCANGCGCANCCTGTCGCTGACTTCTTGCTGTCGATGTCGTCGCCGTCGGGCGGCGGAGGCTGCGGCGGTGTCTGGTGGTCCGGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10328#0 -GCGAAGGTGTCACTGACAGCCATGGCCCACAAGCGCGGCCGTCTTGTTGGTTGGGTGCT 59 consensus_10328#2 -----------------CAGCCATGGCCCACAAGCGCGGCCGTNTTGTTGGTTGGGTGCT 43 consensus_10328#1 GTCGGTCGAGTCGNGGNGGGCCAC--CACGGCAGCGGTACCACCCGGGCAGCCGAGCGGC 58 **** * * **** ** * * * * * consensus_10328#0 TCTCCTCCTCCTCGCCGTG-GCTATCGCCGTCGCCGCCGCGGCCACGCCGAGGCAGCTGT 118 consensus_10328#2 TCTCCTCCTCCTCGCCGTG-GCTATCGCCGGCGCCGCC-CGGCCACGCCGAGGCAGCTGT 101 consensus_10328#1 TCACAGCTCGGCCGCCAGGTGCTCAGACAGCAGTCAGCTCTCCCTCGGCCAGGCGGCTGT 118 ** * * **** * *** * * * * * * ** ** * **** ***** consensus_10328#0 TCCTGGTGACCCAGGC---GCCGGTCACGC---TCACGAACCACCACGGCCAGCTGCTCA 172 consensus_10328#2 TCCTGGTGACCCAGGC---GCCGGTNACGC---TCACGAACCACCACGGCCAGCTGCTCA 155 consensus_10328#1 CGGAGACCTCCCTCGCCGCGCTGGCCGCGCGCCTCTCCCCGCACCGGGGCTCCATCGCCG 178 * *** ** ** ** *** ** * **** *** * * consensus_10328#0 CGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCT-TCACCCCGGCGCAGCGCGCC 231 consensus_10328#2 CGGGGAACTACTCCGTCAACCTGCTCTGGTACGGCCGCT-TCACCCCGGCGCAN-GCGCA 213 consensus_10328#1 TGGTGATAACTGCCCCCGACGTCCTCGTCGACGGCTTCTGCCTCTCCCACTGCGGCCTCC 238 ** ** ** * ** * *** ***** ** * * ** * * * consensus_10328#0 ACC-GTCGCTGACTTCTTGCTGTCGATGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGC 290 consensus_10328#2 NCCTGTCGCTGACTTCTTGCTGTCGATGTCGTCGCCGTCGGG-CGGCGGAGGCTGCGGCG 272 consensus_10328#1 ACGCGTCGGCCACCTCAGGCCGCCGCCGCCGCCGCCACCGCCTCGCCAGCCGCGACGCGC 298 * **** ** ** ** * ** * ** **** ** ** * * ** ** consensus_10328#0 GGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAG 350 consensus_10328#2 GTGTCTGGTGGTCCGGNG------------------------------------------ 290 consensus_10328#1 GGGCGCGGCAGGTTCGCGTACGCGTGGGTGGGGAACGCGGCGGAGCAGTGCCCGGGGGAG 358 * * ** * * * consensus_10328#0 TGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCG 410 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 TGCGCGTGGCCGTTCCACCAGCCGGCGTACGGCCCTCAGGCGCCGCCGCTGGTGTCGCCG 418 consensus_10328#0 AACGCCGACGTGGTGATGGACGGCATCATCATCAGCCTCGCCACGCTGCTCGCCGGGGCG 470 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 AACGCCGACG-------------------------------------------------- 428 consensus_10328#0 GTGACGAACCCGTACGGCGGCGGGTACTTCCAGGGCCCCACCGAGGCGCCGCTGGAGGCG 530 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 ------------------------------------------------------------ consensus_10328#0 GTGACGGCCTGCACGGGGATGTTCGGCGCCGGCGCCTACCCGGGGTACCCCGGCCAGCTG 590 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 ------------------------------------------------------------ consensus_10328#0 CCGGTGGACGCCGCCACCGGCGCCAGCTACAACGCCGTCGGGGTCGCCGGCCGGCGGTTC 650 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 ------------------------------------------------------------ consensus_10328#0 CTCCTGCCGGCGATGTGGGACCCCAAGACCTCGCAGTGCTCTACTCTCGTGTAGTAGTAC 710 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 ------------------------------------------------------------ consensus_10328#0 TAGTACAAACCCTCTGATGCGATCGATCGATGGACCAAAATGGCTTGGGCTCGGTGTACG 770 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 ------------------------------------------------------------ consensus_10328#0 GACGGCTGGGATTAGGGAGTGGAGTGACGTGGTGTCTCGTTTCTTTTGTTTTGTGGATAT 830 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 ------------------------------------------------------------ consensus_10328#0 TTCGTGGTGAACAAAAAAAATGGAAAAAAAAACAGAATGAAGTGGGGTAATGTAATAAAC 890 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 ------------------------------------------------------------ consensus_10328#0 CTAGGCTTTCGTTGTCATGTTCTGTATATATTGGTAAGGCATTGTTCATGGGTTCGTTGA 950 consensus_10328#2 ------------------------------------------------------------ consensus_10328#1 ------------------------------------------------------------ consensus_10328#0 TCGTTGACATCTCAAGCAAGGCCGAAAAAAAAAA 984 consensus_10328#2 ---------------------------------- consensus_10328#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||