These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1911 fasta sequence [GATGCATCCAGCAGTGAAGATGAAGCTCAAAACCCTCAAATTATTCTTAGTAAAGAGGATGTTTACAAGGCAAATCACAAGGGCACTGCTGCTACTAAGAAAAAGAAGAAAGCTAAATTGCAGCGTGTGATTCGTAGTATGAAAAGGCAACAACGTAAATCCACTGAGGACACTGGCTCCAATTATTATTCACCACTGGCGTATTTAAAGGATCCTCAGGGTTTTGCTGAGAAGCTCTTCTCTCGGCTCCAGAAATGCAATGAGCGGTTTGAGGTAAGGATGATGATGTTAAAGGTTATAGCGAGGACTATTGGGCTGCATCACTTGGTTTTGTTGAACTTCTATCCATATCTTCAAAGATACGTTCAGCCTCATCAACGAGATGTAACAACTTTACTTGCTGCAGCAGTACAGGCTTGCCATGATATGGTGCCTCCTGATGCAGTTGAACCACTGTTTAAGCAGATAGTAAATCAATTTGTGCATGATCGTTCTCGCCCAGAGGCTATTGCTGTTGGCTTGAATGTTGTGCGAGAGATCTGCATGAGAATACCTTTGTTGATGAATGAAGATCTACTCCAGGACCTTGTTTTATACAAAAAGTCCCATGAAAAAGCTGTTTCCATTGCCGCTCGTTCTCTAATTACTTTATTCCGGGAGATCTGTCCTTCTCTGCTAGTCAAGAAAGATCGTGGGCGTCCTGCTGATCCGAAGGCTCGACCAAAAGCATTCGGCGAAGCAACTATCGCTTCTGATGTGCCTGGAGCTGAGTTGCTAGATGAAGATTTTTCATCAGAAGGGGAAGGCTCAGACGATGAGTCTGATGCTTTTGATTCTAATGATGAGAAAGAGTTGCAATCTGCTCGTGGTACTAAACAAAATTTGGATGGTTCGTCTGAAGCAAACAAGCTTGACACAGATGAAGGTATGAAAGAGGAAGATCAACTATCTGGGGATGAAGATGATACAGAGGAACTAGATGAGGATCAAGACATCTCTGACAATGATAGTGAAGAAAATGATGATGAGCTAGAATTGGACTCTGATATGGATGAGGAGAATGATGTATCTGAATCTGATGATGATGAGGAACTCAGTGAGAAATTGGATGATTCTGATGAAGGCTCTGATCAGGATGATGACAGTGACCAGGATGATAAGTCAAAAAACAGCAGTCGCAAGGCAAATAAGAGAAAGTTGAGTGATTATATAGGGCAACTTAATGCTGCAGATGCAAGCCTTCGAGCTCTGAAGAAGTTGGCAGGAGCCAAGAAGGCTGAAGCTTCGTGCGATGAAGCTGGTAAAATCTTATCTGATGAAGATTTTAAGCGTATTAAGGAGCTAAAGGCAAAAAAAGAAGCAAAACTGGCTCTGGCACAACATGGACTCGGCAAGGGCCATGACACAAAATCA-GTAACCTTTAAAATGCCTTCTTCTGATCAGCTTAGTCTGAAACGGGTTGACCCATCCAAGCTTGAGGCTCACATAAAGAGAAAGCTTACGAAAGAGGAGAGATTAGAAATGGTGAAGGCTGGAAGAGAGGATAGAGGAAAATACCAAGCAAGAACAGCTGTGAAACAGAAAAAGACCGGTGGCTTGAGCAATAGGCAGAAACAACACAAGAAGAAAATGCCCCTCGCTGCAAGCAGAGCGAAGGCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGCAAAAGCGCTCGGGAAAGCAATTCAGAGGACGGAAGGCGTGGAAATGAGGGATTTTTTGTACTTGCGTTTGCCAATTCTTGTGGTCTACTGGCCAAAATTTTGACTCCTTCAGTTAATGATTTTCGTATACAAATATGGTTTCACA-ACCGTGTATCATCGATTTTTCAAGTCTGGTGATCTTTTGTGAGTGGAGAGAATGAACCGGTATATCATCGCTCAAA] [+] EMBL AK060199 [GATGCATCCAGCAGTGAAGATGAAGCTCAAAACCCTCAAATTATTCTTAGTAAAGAGGATGTTTACAAGGCAAATCACAAGGGCACTGCTGCTACTAAGAAAAAGAAGAAAGCTAAATTGCAGCGTGTGATTCGTAGTATGAAAAGGCAACAACGTAAATCCACTGAGGACACTGGCTCCAATTATTATTCACCACTGGCGTATTTAAAGGATCCTCAGGGTTTTGCTGAGAAGCTCTTCTCTCGGCTCCAGAAATGCAATGAGCGGTTTGAGGTAAGGATGATGATGTTAAAGGTTATAGCGAGGACTATTGGGCTGCATCACTTGGTTTTGTTGAACTTCTATCCATATCTTCAAAGATACGTTCAGCCTCATCAACGAGATGTAACAACTTTACTTGCTGCAGCAGTACAGGCTTGCCATGATATGGTGCCTCCTGATGCAGTTGAACCACTGTTTAAGCAGATAGTAAATCAATTTGTGCATGATCGTTCTCGCCCAGAGGCTATTGCTGTTGGCTTGAATGTTGTGCGAGAGATCTGCATGAGAATACCTTTGTTGATGAATGAAGATCTACTCCAGGACCTTGTTTTATACTAAAAGTCCCATGAAAAAGCTGTTTCCATTGCCGCTCGTTCTCTAATTACTTTATTCCGGGAGATCTGTCCTTCTCTGCTAGTCAAGAAAGATCGTGGGCGTCCTGCTGATCCGAAGGCTCGACCAAAAGCATTCGGCGAAGCAACTATCGCTTCTGATGTGCCTGGAGCTGAGTTGCTAGATGAAGATTTTTCATCAGAAGGGGAAGGCTCAGACGATGAGTCTGATGCTTTTGATTCTAATGATGAGAAAGAGTTGCAATCTGCTCGTGGTACTAAACAAAATTTGGATGGTTCGTCTGAAGCAAACAAGCTTGACACAGATGAAGGTATGAAAGAGGAAGATCAACTATCTGGGGATGAAGATGATACAGAGGAACTAGATGAGGATCAAGACATCTCTGACAATGATAGTGAAGAAAATGATGATGAGCTAGAATTGGACTCTGATATGGATGAGGAGAATGATGTATCTGAATCTGATGATGATGAGGAACTCAGTGAGAAATTGGATGATTCTGATGAAGGCTCTGATCAGGATGATGACAGTGACCAGGATGATAAGTCAAAAAACAGCAGTCGCAAGGCAAATAAGAGAAAGTTGAGTGATTATATAGGGCAACTTAATGCTGCAGATGCAAGCCTTCGAGCTCTGAAGAAGTTGGCAGGAGCCAAGAAGGCTGAAGCTTCGTGCGATGAAGCTGGTAAAATCTTATCTGATGAAGATTTTAAGCGTATTAAGGAGCTAAAGGCAAAAAAAGAAGCAAAACTGGCTCTGGCACAACATGGACTCGGCAAGGGCCATGACACAAAATCA GTAACCTTTAAAATGCCTTCTTCTGATCAGCTTAGTCTGAAACGGGTTGACCCATCCAAGCTTGAGGCTCACATAAAGAGATAGCTTACGAAAGAGGAGAGATTAGAAATGGTGAAGGCTGGAAGAGAGGATAGAGGAAAATACCAAGCAAGAACAGCTGTGAAACAGAAAAAGACCGGTGGCTTGAGCAATAGGCAGAAACAACACAAGAAGAAAATGCCCCTCGCTGCAAGCAGAGCGAAGGCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGCAAAAGCGCTCGGGAAAGCAATTCAGAGGACGGAAGGCGTGGAAATGAGGGATTTTTTGTACTTGCGTTTGCCAATTCTTGTGGTCTACTGGCCAAAATTTTGACTCCTTCAGTTAATGATTTTCGTATACAAAT ] [+] EMBL CF322660 [ AAGATCTACTCCAGGACCTTGTTTTATACAAAAAGTCCCATGAAAAAGCTGTTTCCATTGCCGCTCGTTCTCTAATTACTTTATTCCGGGAGATCTGTCCTTCTCTGCTAGTCAAGAAAGATCGTGGGCGTCCTGCTGATCCGAAGGCTCGACCAAAAGCATTCGGCGAAGCAACTATCGCTTCTGATGTGCCTGGAGCTGAGTTGCTAGATGAAGATTTTTCATCAGAAGGGGAAGGCTCAGACGATGAGTCTGATGCTTTTGATTCTAATGATGAGAAAGAGTTGCTATCTGCTCGTGGTACTAAACAAAATTTGGATGGTTCGTCTGAAGCAAACAAGCTTGACACAGATGAAGGTATGAAAGAGGAAGATCAACTATCTGGGGATGAAGATGATACAGAGGAACTAGATGAGGATCAAGACATCTCTGACAATGATAGTGAAGAAAATGATGATGAGCTAGAATTGGACTCTGATATGGATGAGGAGAATGATGTATCTGAATCTGATGATGATGAGGAACTCAGTGAGAAATTGGAT ] [+] EMBL OSC28031 [ CAGGACCTTGTTTTATACAAAAAGTCCCATGAAAAAGCTGTTTCCATTGCCGCTCGTTCTCTAATTACTTTATTCCGGGAGATCTGTCCTTCTCTGCTAGTCAAGAAAGATCGTGGGCGTCCTGCTGATCCGAAGGCTCGACCAAAAGCATTCGGCGAAG AACTATCGCTTCTGATGTGCCTGGAGCTGAGTTGCTAGATGAAGATTTTTCATCAGAAGGGGAAGGCTCAGACGATGAGTCTGATGCTTTTGATTCTAATGATGAGAAAGAGTTGCAATCTGCTCGTGGTACTAAACAAAATTTGGATGGTTCGTCTTGAGCAAACAAGCTTGACACAG ] [+] EMBL CF306974 [ CCCATGAAAAAGCTGTTTCCATTGCCGCTCGTTCTCTAATTACTTTATTCCGGGAGATCTGTCCTTCTCTGCTAGTCAAGAAAGATCGTGGGCGTCCTGCTGATCCGAAGGCTCGACCAAAAGCATTCGGCGAAGCAACTATCGCTTCTGATGTGCCTGGAGCTGAGTTGCTAGATGAAGATTTTTCATCAGAAGGGGAAGGCTCAGACGATGAGTCTGATGCTTTTGATTCTAATGATGAGAAAGAGTTGCAATCTGCTCGTGGTACTAAACAAAATTTGGATGGTTCGTCTGAAGCAAACAAGCTTGACACAGATGAAGGTATGAAAGAGGAAGATCAACTATCTGGGGATGAAGATGATACAGAGGAACTAGATGAGGATCAAGACATCTCTGACAATGATAGTGAAGAAAATGATGATGAGCTAGAATTGGACTCTGATATGGATGAGGAGAATGATGTATCTGAATCTGATGATGATGAGGA ] [+] EMBL BI797418 [ TGGCTCTGGCACAACATGGACTCTGCAA GGCCATGACAC AAATCACGTAACCTTTAAAATGCCTTCTTCTGATCAGCTTAGTCTGAAACGGGTTGACCCATCCAAGCTTGAGGCTCACATAAAGAGAAAGCTTACGAAAGAGGAGAGATTAGAAATGGTGAAGGCTGGAAGAGAGGATAGAGGAAAATACCAAGCAAGAACAGCTGTGAAACAGAAAAAGACCGGTGGCTTGAGC ATAGGCAGAAAC ACACAAGAAGAAAATGCCCCTCGCTGCAAGCAGAGCGAA GCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGCAAAAGCGCTCGGGAAAGCAATTCAGAGGACGGAAGGCGTGGAAATGAGGGATTTTTTGTACTTGCGTTTCCCAATTCTTGTGGTCTACTGGCCAAAATTTTGACTCCTTCAGTTAATGATTTTCGTATACAAATATGGTTTCACACACCGTGTATCATCGATTTTTCAAGTCTGGTGATCTTTTGTGAGTGGAGAGAATGAACCGGTATATCATCGCTCAAA] [+] EMBL BI795850 [ TGATCAGCTTAGTCTGAAACGGGTTGACCCATCCAAGCTTGAGGCTCACATAAAGAGAAAGCTTACGAAAGAGGAGAGATTAGAAATGGTGAAGGCTGGAAGAGAGGATAGAGGAAAATACCAAGCAAGAACAGCTGTGAAACAGAAAAAGACCGGTGGCTTGAGC ATAGGCAGAAACAACACAAGAAGAAAATGCCCCTCGCTGCAAGCAGAGCGAAGGCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGC AAAGCGCTCGGGAAAGC ATTCAGAGGACGGAAGGCGTGGAAATGAGGGATTTTTTGTACTTGCGTTTGCC ATTCTTGTGGTCTACTGGCC AAATTTTGACTCCTTCAGTTAATGATTTTCGTATACAAAaa ] [+] EMBL C74695 [ ACCAAGCAAGAACAGCTGTGAAACAGAAAAAGATCGGTGGCTTGAGCAATAGGCAGAAACAACACAAGAAGAAAATGCCCCTCGCTGCAA CAGAGCGAAGGCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGCAAAAGCGCTCGGGAAAGCAATTCAGAGGACGGAAGGCGTGGAAATGAGGGATTTTTTGTACTTGCGTTTGCCAATTCTTGTGGTCTACTGGCCAAAATTTTGACTCCTTCAGTTAATGATTTTCGTATACCAATATGGTTTCACA ACCGTGTATCATCnt ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||