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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1414 fasta sequence
[CTCTTCACACCACACGAGCCTTATCGCCTCCTAGATCTCTCTCGCGTTTCTCCCCGCCGCCCCCTCCTCGATCGATTCCATCGACGCGGCGGCGTATGCGCGACCTACGAAGCTTCCGACTCCCTCCCTACCTTCGTCCCGCTCCTCCCCACACATCTCTCCCCGCTCCACACCGCTCCCCATCGCTCCACGCCACTCCCCATCGCTCCCGCATCTACGGTGACGGCGGGAGATAGATGCGGTGGATGGATGCAGCGACAACAACGATGGATGGATGTTGCGGCGACGGCGGGAGATGGATGCATCGTCATCGGCTGAGGTGACGGGGAGATGCGGCGGCGGCGGCGACGACGGCGGTGGAGGAGGAGACGAGGAGATACGGTGTCGTCGGCGGCGGCGGAGGCGACGGGGAGATGCGGCGTCAGTGTCGGCGGAGGAGACGAGGAGATGCGG-TGTCGTTGTCGGCAGCGGAGGCGACGTGGAGATGC-GGCGTTGGCGGCGACAGAGGCGACGAGGAGATGCGGCGCGTCGTCGTCGGCGGTGGATGCCTCGGCGT-CGCGGGGCGCCCGCACCACGTCCTTCCGTGCGTGGTTTCGTGCCGCGTGACACGGTCAAGGCACAAGCCACAACGCGATGCAGACGCTTCCCCAACTGTCCTCTTTTCTTCTTTTTTACAAGCTCTGGAACTCGCTGTTGTGTCTCTGCATTTCGGTCTCTGCTGCAGTGCTGCTTCGTGGCGGTTGGTTTCTTGCTTCTTGTTGATCTTGGAAGAAAGTGTGATTGTTTGAGCGGCAGATGTGATGCGCAAGGCGTTAGCGATCGATGGATGCGGTGCTGTTGATGGATCTGATGCAGTTTTCTTTTCTTGCAGTTTTCTTTTCTTGGTTGTTCTTGGTTCTTGCTAGTTCATGCAGGTGAATTCAAAACATTTTATTTGGTTGCGGAGATATTATCTTTTCTTTTAGCGGAGAATGGATTTTATCCATTTTATTTTATTTTATCCATTTTATTTGGTTGCGGAGATATTATCTTTTCTTTTGGCGGAGAATGGATTTTTAGCAAGCATCTTCCTTTTTTTTTCTTTTCAGATTGGAGAGGTCTTTTCTTTCTGTTGTATAAAAATCCAACCTTTTTTTTTTTGTCCTTTTTTATGCGCTGATGCCTCTGTACGTACTGCAGTACTACTAATTAAATAAAGATGTAGTTAATGAGGGTATTTTTGGTATTTTCACTTTAGCCTTAAACTTGCACCAGGAATCCATGAATCGACTCTTTCCAGTACGGAGGAAGAAATCTTATAATCTTATAAAGTATACGTTAGATGGAGACCATGTTATATGTTAGGTGGAGACCATGTTATATGTTGTTGTCTTATCTGTCATATACTCCAATGTCAAATATTTCTTTGATCATT]
[+] EMBL AK103062 [CTCTTCACACCACACGAGCCTTATCGCCTCCTAGATCTCTCTCGCGTTTCTCCCCGCCGCCCCCTCCTCGATCGATTCCATCGACGCGGCGGCGTATGCGCGACCTACGAAGCTTCCGACTCCCTCCCTACCTTCGTCCCGCTCCTCCCCACACATCTCTCCCCGCTCCACACCGCTCCCCATCGCTCCACGCCACTCCCCATCGCTCCCGCATCTACGGTGACGGCGGGAGATAGATGCGGTGGATGGATGCAGCGACAACAACGATGGATGGATGTTGCGGCGACGGCGGGAGATGGATGCATCGTCATCGGCTGAGGTGACGGGGAGATGCGGCGGCGGCGGCGACGACGGCGGTGGAGGAGGAGACGAGGAGATACGGTGTCGTCGGCGGCGGCGGAGGCGACGGGGAGATGCGGCGTCAGTGTCGGCGGAGGAGACGAGGAGATGCGG TGTCGTTGTCGGCAGCGGAGGCGACGTGGAGATGC GGCGTTGGCGGCGACAGAGGCGACGAGGAGATGCGGCGCGTCGTCGTCGGCGGTGGATGCCTCGGCGT CGCGGGGCGCCCGCACCACGTCCTTCCGTGCGTGGTTTCGTGCCGCGTGACACGGTCAAGGCACAAGCCACAACGCGATGCAGACGCTTCCCCAACTGTCCTCTTTTCTTCTTTTTTACAAGCTCTGGAACTCGCTGTTGTGTCTCTGCATTTCGGTCTCTGCTGCAGTGCTGCTTCGTGGCGGTTGGTTTCTTGCTTCTTGTTGATCTTGGAAGAAAGTGTGATTGTTTGAGCGGCAGATGTGATGCGCAAGGCGTTAGCGATCGATGGATGCGGTGCTGTTGATGGATCTGATGCAGTTTTCTTTTCTTGCAGTTTTCTTTTCTTGGTTGTTCTTGGTTCTTGCTAGTTCATGCAGGTGAATTCAAAACATTTTATTTGGTTGCGGAGATATTATCTTTTCTTTTAGCGGAGAATGGATTTTATCCATTTTATTTTATTTTATCCATTTTATTTGGTTGCGGAGATATTATCTTTTCTTTTGGCGGAGAATGGATTTTTAGCAAGCATCTTCCTTTTTTTTTCTTTTCAGATTGGAGAGGTCTTTTCTTTCTGTTGTATAAAAATCCAACCTTTTTTTTTTTGTCCTTTTTTATGCGCTGATGCCTCTGTACGTACTGCAGTACTACTAATTAAATAAAGATGTAGT ]
[+] EMBL AK063848 [ ATCGCCTCCTAGATCTCTCTCGCGTTTCTCCCCGCCGCCCCCTCCTCGATCGATTCCATCGACGCGGCGGCGTATGCGCGACCTACGAAGCTTCCGACTCCCTCCCTACCTTCGTCCCGCTCCTCCCCACACATCTCTCCCCGCTCCACACCGCTCCCCATCGCTCCACGCCACTCCCCATCGCTCCCGCATCTACGGTGACGGCGGGAGATAGATGCGGTGGATGGATGCAGCGACAACAACGATGGATGGATGTTGCGGCGACGGCGGGAGATGGATGCATCGTCATCGGCTGAGGTGACGGGGAGATGCGGCGGCGGCGGCGACGACGGCGGTGGAGGAGGAGACGAGGAGATACGGTGTCGTCGGCGGCGGCGGAGGCGACGGGGAGATGCGGCGTCAGTGTCGGCGGAGGAGACGAGGAGATGCGG TGTCGTTGTCGGCAGCGGAGGCGACGTGGAGATGC GGCGTTGGCGGCGACAGAGGCGACGAGGAGATGCGGCGCGTCGTCGTCGGCGGTGGATGCCTCGGCGT CGCGGGGCGCCCGCACCACGTCCTTCCGTGCGTGGTTTCGTGCCGCGTGACACGGTCAAGGCACAAGCCACAACGCGATGCAGACGCTTCCCCAACTGTCCTCTTTTCTTCTTTTTTACAAGCTCTGGAACTCGCTGTTGTGTCTCTGCATTTCGGTCTCTGCTGCAGTGCTGCTTCGTGGCGGTTGGTTTCTTGCTTCTTGTTGATCTTGGAAGAAAGTGTGATTGTTTGAGCGGCAGATGTGATGCGCAAGGCGTTAGCGATCGATGGATGCGGTGCTGTTGATGGATCTGATGCAGTTTTCTTTTC ]
[+] EMBL CB655571 [ GCGCGACCTACGAAGCTTCCGACTCCCTCCCTACCTTCGTCCCGCTCCTCCCCACACATCTCTCCCCGCTCCACACCGCTCCCCATCGCTCCACGCCACTCCCCATCGCTCCCGCATCTACGGTGACGGCGGGAGATAGATGCGGTGGATGGATGCAGCGACAACAACGATGGATGGATGTTGCGGCGACGGCGGGAGATGGATGCATCGTCATCGGCTGAGGTGACGGGGAGATGCGGCGGCGGCGGCGACGACGGCGGTGGAGGAGGAGACGAGGAGATACGGTGTCGTCGGCGGCGGCGGAGGCGACGGGGAGATGCGGCGTCAGTGTCGGCGGAGGAGACGAGGAGATGCGG TGTCGTTGTCGGCAGCGGAGGCGACGTGGAGATGC GGCGTTGGCGGCGACAGAGGCGACGAGGAGATGCGGCGCGTCGTCGTCGGCGGTGGATGCCTCGGCGT CGCGGGGCGCCCGCACCACGTCCTTCCGTGCGTGGTTTCGTGCCGCGTGACACGGTCAAGGCACAAGCCACAACGCGATGCAGACGCTTCCCCAACTGTCCTCTTTTCTTCTTTTTTACAAGCTCTGGAACTCGCTGTTGTGTCTCTGCATTTCGGTCTCTGCTGCAGTGCTGCTTCGTGGCGGTTGGTTTCTTGCTTCTTGTTGATCTTGGAAGAAAGTGTGATTGTTTGAGCGGCAGATGTGATGCGNCAGGCGTTAGCGATCGATGGATGCGGTGCTGTTGATGGATCTGATGCAGTTTTCTTTTCTTGCAGT ]
[+] EMBL CF322684 [ CGCGACCTACGAAGCTTCCGACTCCCTCCCTACCTTCGTCCCGCTCCTCCCCACACATCTCTCCCCGCTCCACACCGCTCCCCATCGCTCCACGCCACTCCCCATCGCTCCCGCATCTACGGTGACGGCGGGAGATAGATGCGGTGGATGGATGCAGCGACAACAACGATGGATGGATGTTGCGGCGACGGCGGGAGATGGATGCATCGTCATCGGCTGAGGTGACGGGGAGATGCGGCGGCGGCGGCGACGACGGCGGTGGAGGAGGAGACGAGGAGATACGGTGTCGTCGGCGGCGGCGGAGGCGACGGGGAGATGCGGCGTCAGTGTCGGCGGAGGAGACGAGGAGATGCGGNTGTCGTTGTCGGCAGCGGAGGCGACGTGGAGATGCNGGCGTTGGCGGCGACAGAGGCGACGAGGAGATGCGGCGCGTCGTCGTCGGCGGTGGATGCCTCGG GTCCGCGGGGCGCCCGCACCACGTCCTTCCGTGCGTGGTTTCGTGCCGCGTGACACGGTCAAGGCACAAGCCACAACGCGATGCAGACGCTTCCCCAACTGTCCTC ]
[+] EMBL AU162785 [ CGGCGGTGGATGCCTCGGCGT CGCGGGGCGCCCGCACCACGTCCTTCCGTGCGTGGTTTCGTGCCGCGTGACACGGTCAAGGCACAAGCCACAACGCGATGCAGACGCTTCCCCAACTGTCCTCTTTTCTTCTTTTTTACAAGCTCTGGAACTCGCTGTTGTGTCTCTGCATTTCGGTCTCTGCTGCAGTGCTGCTTCGTGGCGGTTGGTTTCTTGCTTCTTGTTGATCTTGGAAGAAAGTGTGATTGTTTGAGCGGCAGATGTGATGCGCAAGGCGTTA CGATCGATGGATGCGGTGCTGTTGATGGATCTGATGCAGTTTTCTTTTCTTGCAGTTTTCTTTTCTTGGTTGTTCTTGGTTCTTGCTAGTTCATGCAGGTGAATTCAAAACATTTTATTTGGTTGCGGAGATATTATCTTTNCTTTTAGCGGAGAATGGATTTTATCCATTTTATTTTATTTTATCCATTTTATTTGGTTGCGGAGATATTATCTTTTCTTTTGGCGGAGAATGGATTTTTAGCAAGC ]
[-] EMBL CB655572 [ TTCGTGGCGGTTGGTTTCTTGCTTCTTGTTGATCTTGGAAGAAAGTGTGATTGTTTGAGCGGCAGATGTGATGCGCAAGGCGTTAGCGATCGATGGATGCGGTGCTGTTGATGGATCTGATGCAGTTTTCTTTTCTTGCAGTTTTCTTTTCTTGGTTGTTCTTGGTTCTTGCTAGTTCATGCAGGTGAATTCAAAACATTTTATTTGGTTGCGGAGATATTATCTTTTTTTTTAGCGGAGAATGGATTTTATCCATTTTATTTTATTTTATCCATTTTATTTGGTTGCGGAGATATTATCTTTTCTTTTGGCGGAGAATGGATTTTTAGCAAGCATCTTCC TTTTTTTTCTTTTCAGATTGGAGAGGTCTTTTCTTTCTGTTGTATAAAAATCCAACCTTTTTTTTTTTGTCCTTTTTTATGCGCTGATGCCTCTGTACGTACTGCAGTACTACTAATTAAATAAAGATGTAGTTAATGAGGGTATTTTTGGTATTTTCACTTTAGCCTTAAACTTGCACCAGGAATCCATGAATCGACTCTTTCCAGTACGGAGGAAGAAATCTTATAATCTTATAAAGTATACGTTAGATGGAGACCATGTTATATGTTAGGTGGAGACCATGTTATATGTTGTTGTCTTATCTGTCATATACTCCAATGTCAAATATTTCTTTGATCATT]
consensusID : consensus_10330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[TATCTTTTCTTTTAGCGGAGAATGGATNTTATCCATTTTATNTTATTTTATCCATTTTATTTGGTTGCGGAGATATTATCTTTTCTTTTGGCGGAGAATGGATTTTTAGCAAGCATCTTCCTTTTTTTTTCTTTTCAGATTGGAGAGGTCTTTTCTTTCTGTTGTATNAAAATCCAACCTTTTTTTTTTTTTTGTCCTTTTTTATGCGCTGATGCCTCTGTACGTACTGCAGTACTACTAATTAAATAAAGATGTAGTTAATGAAAAAAAAAAAAAAAAA]
[+] EMBL AU057893 [TATCTTTTCTTTTAGCGGAGAATGGATNTTATCCATTTTATNTTATTTTATCCATTTTATTTGGTTGCGGAGATATTATCTTTTCTTTTGGCGGAGAATGGATTTTTAGCAAGCATCTTCCTTTTTTTTTCTTTTCAGATTGGAGAGGTCTTTTCTTTCTGTTGTATNAAAATCCAACCTTTTTTTTTTTTTTGTCCTTTTTTATGCGCTGATGCCTCTGTACGTACTGCAGTACTACTAATTAAATAAAGATGTAGTTAATGAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10330#0 CTCTTCACACCACACGAGCCTTATCGCCTCCTAGATCTCTCTCGCGTTTCTCCCCGCCGC 60
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 CCCCTCCTCGATCGATTCCATCGACGCGGCGGCGTATGCGCGACCTACGAAGCTTCCGAC 120
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 TCCCTCCCTACCTTCGTCCCGCTCCTCCCCACACATCTCTCCCCGCTCCACACCGCTCCC 180
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 CATCGCTCCACGCCACTCCCCATCGCTCCCGCATCTACGGTGACGGCGGGAGATAGATGC 240
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 GGTGGATGGATGCAGCGACAACAACGATGGATGGATGTTGCGGCGACGGCGGGAGATGGA 300
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 TGCATCGTCATCGGCTGAGGTGACGGGGAGATGCGGCGGCGGCGGCGACGACGGCGGTGG 360
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 AGGAGGAGACGAGGAGATACGGTGTCGTCGGCGGCGGCGGAGGCGACGGGGAGATGCGGC 420
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 GTCAGTGTCGGCGGAGGAGACGAGGAGATGCGGTGTCGTTGTCGGCAGCGGAGGCGACGT 480
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 GGAGATGCGGCGTTGGCGGCGACAGAGGCGACGAGGAGATGCGGCGCGTCGTCGTCGGCG 540
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 GTGGATGCCTCGGCGTCGCGGGGCGCCCGCACCACGTCCTTCCGTGCGTGGTTTCGTGCC 600
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 GCGTGACACGGTCAAGGCACAAGCCACAACGCGATGCAGACGCTTCCCCAACTGTCCTCT 660
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 TTTCTTCTTTTTTACAAGCTCTGGAACTCGCTGTTGTGTCTCTGCATTTCGGTCTCTGCT 720
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 GCAGTGCTGCTTCGTGGCGGTTGGTTTCTTGCTTCTTGTTGATCTTGGAAGAAAGTGTGA 780
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 TTGTTTGAGCGGCAGATGTGATGCGCAAGGCGTTAGCGATCGATGGATGCGGTGCTGTTG 840
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 ATGGATCTGATGCAGTTTTCTTTTCTTGCAGTTTTCTTTTCTTGGTTGTTCTTGGTTCTT 900
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 GCTAGTTCATGCAGGTGAATTCAAAACATTTTATTTGGTTGCGGAGATATTATCTTTTCT 960
consensus_10330#1 --------------------------------------------------TATCTTTTCT 10
**********
consensus_10330#0 TTTAGCGGAGAATGGATTTTATCCATTTTATTTTATTTTATCCATTTTATTTGGTTGCGG 1020
consensus_10330#1 TTTAGCGGAGAATGGATNTTATCCATTTTATNTTATTTTATCCATTTTATTTGGTTGCGG 70
***************** ************* ****************************
consensus_10330#0 AGATATTATCTTTTCTTTTGGCGGAGAATGGATTTTTAGCAAGCATCTTCCTTTTTTTTT 1080
consensus_10330#1 AGATATTATCTTTTCTTTTGGCGGAGAATGGATTTTTAGCAAGCATCTTCCTTTTTTTTT 130
************************************************************
consensus_10330#0 CTTTTCAGATTGGAGAGGTCTTTTCTTTCTGTTGTATAAAAATCCAACCTTTTTTTTTTT 1140
consensus_10330#1 CTTTTCAGATTGGAGAGGTCTTTTCTTTCTGTTGTATNAAAATCCAACCTTTTTTTTTTT 190
************************************* **********************
consensus_10330#0 ---GTCCTTTTTTATGCGCTGATGCCTCTGTACGTACTGCAGTACTACTAATTAAATAAA 1197
consensus_10330#1 TTTGTCCTTTTTTATGCGCTGATGCCTCTGTACGTACTGCAGTACTACTAATTAAATAAA 250
*********************************************************
consensus_10330#0 GATGTAGTTAATGAGGGTATTTTTGGTATTTTCACTTTAGCCTTAAACTTGCACCAGGAA 1257
consensus_10330#1 GATGTAGTTAATGAAAAAAAAAAAAAAAAA------------------------------ 280
************** * *
consensus_10330#0 TCCATGAATCGACTCTTTCCAGTACGGAGGAAGAAATCTTATAATCTTATAAAGTATACG 1317
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 TTAGATGGAGACCATGTTATATGTTAGGTGGAGACCATGTTATATGTTGTTGTCTTATCT 1377
consensus_10330#1 ------------------------------------------------------------
consensus_10330#0 GTCATATACTCCAATGTCAAATATTTCTTTGATCATT 1414
consensus_10330#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||