These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 841 fasta sequence [CCTTTTTTTTGGAGTGACAAGTTAGTGTAGCCAGTACAATTAACCTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTTGTCTGAAATTTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGATTTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATGCCCATACTCCATTAGCTGAATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATATATGCTCTCATCATGGAGAAGTACACGCGCATTTTCATGATAAACTAGATCAAAGAATCTCCCAGGTGACCTGGATTTTTCGTATATGTAAAGTTGGAGCAGCTTGTTATCCATTTCGTCAGAAGCTATCGCCTGAAGCT] [+] EMBL CB668044 [CCTTTTTTTTGGAGTGACAAGTTAGTGTAGCCAGTACAATTAACCTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTTGTCTGAAATTTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGATTTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATGCCCATACTCCATTAGCTGAATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATATATGCTCTCATCATGGAGAAGTACACGCGCATTTTCATGATAAACTAGATCAAAGAATCTCCCAGGTGACCTGGATTTTTCGTATATGTAAAGTTGGAGCAGCTTGTTATCCATTTCGTCAGAAGCTATCGCCTGAAGCT] [-] EMBL CB000512 [ ACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTTGTCTGAAATTTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGATTTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATGGATAGACACTGCAGTTACTTCAGGTTTTTCATGCCCA ] [-] EMBL CF322922 [ TAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGATTTGCAGGATATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATCAATTGACAATGCAGTTACTTCAGGTTTTTCATGCCCATACTCCATTAGCTGAATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATATATGCT ] [-] EMBL CA998176 [ ATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATTCCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATTATATAGATAAGACGAAAAATTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATGCCCATACT ] consensusID : consensus_10338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACAGGCAAAACTATATTAACAGGAGGGACAAGTTAGGGGAGCCCGGACAATTAACAAGAAAAAAGGCATTCTCAGGAAACAAATGGACCCAATTTTAGGCCATTAAAAAAACTCACGGGGGCCACACACTTCAACATTTACCAAAGAATCCCATCTATTATTCCAAAGGGACAGGTGGCTGAAAATTTTGGAAAAATAAGGGTCACAGGGGAGTTTTCGAAACACGGCAGCATCTCGGATTTGAAACCGGGGGAAAATTTCGCCGCTTAACCCTAGGGCCCCGATAGAAAACTATGGAAACGCTGTACTTTTACAGGAAAAGCTTTCACAAAATCCGCCTTTTCAGGGATGGGTCCACTAAAAAAAACTCTCCCCTTTCTTAAATGAAAAAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGAATTGCAGGAAATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGGCATCGGTTCCCCCACGCTTCCCTTTATTCCCCCCAAGGAAGATATCGGCATACAATTTAGTATTAGAAATACTTGACGGATACTCTTTATTTAGATGAGACCAAAAATTTGGCT] [+] EMBL CA762886 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACAGGCAAAACTATATTAACAGGAGGGACAAGTTAGGGGAGCCCGGACAATTAACAAGAAAAAAGGCATTCTCAGGAAACAAATGGACCCAATTTTAGGCCATTAAAAAAACTCACGGGGGCCACACACTTCAACATTTACCAAAGAATCCCATCTATTATTCCAAAGGGACAGGTGGCTGAAAATTTTGGAAAAATAAGGGTCACAGGGGAGTTTTCGAAACACGGCAGCATCTCGGATTTGAAACCGGGGGAAAATTTCGCCGCTTAACCCTAGGGCCCCGATAGAAAACTATGGAAACGCTGTACTTTTACAGGAAAAGCTTTCACAAAATCCGCCTTTTCAGGGATGGGTCCACTAAAAAAAACTCTCCCCTTTCTTAAATGAAAAAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTTGAGGAATTGCAGGAAATCTTGCATTCAAGACCATTAGTAACCATGAAAGCATCAATGGCCTTCAAAGAAGCTTGAGAGGCATCGGTTCCCCCACGCTTCCCTTTATTCCCCCCAAGGAAGATATCGGCATACAATTTAGTATTAGAAATACTTGACGGATACTCTTTATTTAGATGAGACCAAAAATTTGGCT] consensusID : consensus_10338#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [TGGTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGCGTAGCCAGTACAATTAACCTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTGTCTGAAAATTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTCGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTGAGGATTGTGCAGGATATCTGTGGCATTCAAGACCATTAGTAACCATGAAAG] [-] EMBL CF310363 [TGGTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGCGTAGCCAGTACAATTAACCTGAATAAATGCATTCTCATGATACAT ] [-] EMBL BI811766 [ TTTTTTTTTAGGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGTGTAGCCAGTACAATTAACAAGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCACGGTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGTGTCTGAAAATTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCTCGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTCGATAGAAATCTATGGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTCCACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACATAGGAAACCTTGAGGATTGTGCAGGATATCTGTGGCATTCAAGACCATTAGTAACCATGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10338#0 ------------------------------------------------------------ consensus_10338#1 ------------------------------------------------------------ consensus_10338#2 TGGTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCAGTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_10338#0 ------------------------------------------------------------ consensus_10338#1 ------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 42 consensus_10338#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 120 consensus_10338#0 ----------------CCTTTTTTTTGGAGTGACAAGTTAGTGTAGCCAGTACAATTAAC 44 consensus_10338#1 GGAAAACAGGCAAAACTATATTAACAGGAGGGACAAGTTAGGGGAGCCCGGACAATTAAC 102 consensus_10338#2 GGATAACATGCAAAACTATATTAACAGGAGTGACAAGTTAGCGTAGCCAGTACAATTAAC 180 * ** **** ********** * **** * ********* consensus_10338#0 CTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCA 104 consensus_10338#1 AAGAAAAAAGGCATTCTCAGGAAACAAATGGACCCAATTTTAGGCCATTAAAAAAACTCA 162 consensus_10338#2 CTGAATAAATGCATTCTCATGATACATATGTACACAATTTTAGGCCATTAAGAGAACTCA 240 *** *** ********* ** *** *** ** ***************** * ****** consensus_10338#0 CGGTTGCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAGT 164 consensus_10338#1 CGGGGGCCACACACTTCAACATTTACCAAAGAATCCCATCTATTATTCCAAAGGGACAGG 222 consensus_10338#2 CGGT-GCCACACACTTCAGCATTTACCAGAGTATCCCATCTATTATTCCAAAGGTACAG- 298 *** ************* ********* ** ********************** **** consensus_10338#0 TGTCTGAAA-TTTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCT 223 consensus_10338#1 TGGCTGAAAATTTTGGAAAAATAAGGGTCACAGGGGAGTTTTCGAAACACGGCAGCATCT 282 consensus_10338#2 TGTCTGAAA-ATTTGGAATATTAAGGTTCACATGGCAGTTTTCGAAGCACGTCAGCATCT 357 ** ****** ******* * ***** ***** ** ********** **** ******** consensus_10338#0 CGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTTGATAGAAATCTAT 283 consensus_10338#1 CGGATTTGAAACCGGGGGAAAATTTCGCCGCTTAACCCTAGGGCCCCGATAGAAAACTAT 342 consensus_10338#2 CGGATTTGATACAGCGGCAGAATTTCGCCGCTTAACCCTAGGGCCTCGATAGAAATCTAT 417 ********* ** * ** * ************************* ******** **** consensus_10338#0 GGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTC 343 consensus_10338#1 GGAAACGCTGTACTTTTACAGGAAAAGCTTTCACAAAATCCGCCTTTTCAGGGATGGGTC 402 consensus_10338#2 GGAATCGCTGTACTTTTACAGCATAAGCTTTCACAAAATCCGCCTTTTCAGGTATGGTTC 477 **** **************** * **************************** **** ** consensus_10338#0 CACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACAT 403 consensus_10338#1 CACTAAAAAAAACTCTCCCCTTTCTTAAATGAAAAAAGAAATCTTCAGTATCAAGGACAT 462 consensus_10338#2 CACTAGATGAAACTCTCCTCTTTCTTATATGAAATAAGAAATCTTCAGTATCAAGGACAT 537 ***** * ********* ******** ****** ************************* consensus_10338#0 AGGAAACCTTTGAGGATTTGCAGGATATCTT--GCATTCAAGACCATTAGTAACCATGAA 461 consensus_10338#1 AGGAAACCTTTGAGGAATTGCAGGAAATCTT--GCATTCAAGACCATTAGTAACCATGAA 520 consensus_10338#2 AGGAAACCTTGAGGATTGTGCAGGATATCTGTGGCATTCAAGACCATTAGTAACCATGAA 597 ********** * ******* **** *************************** consensus_10338#0 AGCATCAATGGCCTTCAAAGAAGCTTGAGAGTCATCGTTTCCCCCACGCTTCCGTTTATT 521 consensus_10338#1 AGCATCAATGGCCTTCAAAGAAGCTTGAGAGGCATCGGTTCCCCCACGCTTCCCTTTATT 580 consensus_10338#2 AG---------------------------------------------------------- 599 ** consensus_10338#0 CCTCCCAAGGAAGATATCGTCATACAATTTAGTATTAGAAATACTTGACAGATACTCATT 581 consensus_10338#1 CCCCCCAAGGAAGATATCGGCATACAATTTAGTATTAGAAATACTTGACGGATACTCTTT 640 consensus_10338#2 ------------------------------------------------------------ consensus_10338#0 ATATAGATAAGACGAAAAATTTGGATCAATTGACACTGCAGTTACTTCAGGTTTTTCATG 641 consensus_10338#1 ATTTAGATGAGACCAAAAATTTGGCT---------------------------------- 666 consensus_10338#2 ------------------------------------------------------------ consensus_10338#0 CCCATACTCCATTAGCTGAATTGATAATCTTGTAGGATTTGAACGCCGTTCAAATCGATA 701 consensus_10338#1 ------------------------------------------------------------ consensus_10338#2 ------------------------------------------------------------ consensus_10338#0 TATGCTCTCATCATGGAGAAGTACACGCGCATTTTCATGATAAACTAGATCAAAGAATCT 761 consensus_10338#1 ------------------------------------------------------------ consensus_10338#2 ------------------------------------------------------------ consensus_10338#0 CCCAGGTGACCTGGATTTTTCGTATATGTAAAGTTGGAGCAGCTTGTTATCCATTTCGTC 821 consensus_10338#1 ------------------------------------------------------------ consensus_10338#2 ------------------------------------------------------------ consensus_10338#0 AGAAGCTATCGCCTGAAGCT 841 consensus_10338#1 -------------------- consensus_10338#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||