These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1282 fasta sequence [TCTCTTTTTTTATTCACAAATTAAGAGCTATTATTGAAAATGCCA-TGAACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTATAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTT-GATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTGCAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAACAGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTTACTGTTTTCTCCGATGTCAAAATCACTATATACAAAACTCTCAGCAGCGTCTCTTCGATTTCTTTTATGACAAACATCCCACTTTTGAAGAGCCTCAATAATAAACCTAGTGTCAGTTTCTCTTTGTGATCCATAAGGAATGGCACTCGAGGGAAAATCAATTCCAGGATCCTGCTCTGCAGAGCGATGGAGAACATACTGAATGATGCTTCCAGATGGAGAAAATACTAGTAAATGATACTTCATGCAAGGCGAACTTCCATCTGAGTTTTTGACGGCACCCTTGCAATTGTGAAATGTTGAAGCAATAGCACCAGAAATT] [+] EMBL CB680804 [TCTCTTTTTTTATTCACAAATTAAGAGCTATTATTGAAAATGCCA TGAACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTATAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTT GATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAAACACATGAGTCTGC ] [-] EMBL AU032740 [ ttTTTTTTTATTCACAAATTAAGAGCTATTATTGAAAATGCAA TGGACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTATAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTTGGATCACAGTTGCTATCAC AATCTGGGGGTNGCTCTCTG ] [+] EMBL CB659924 [ TTCACAAATTAAGAGCTATTATTGAAAATGCAC TGAACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTATAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTT GATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCT ] [+] EMBL CB642587 [ CTATTATTGAAAAT CCATTGAACAATCTTGTTATGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCATTGGGCCTTAATTCCACCTCCCCTTCATTTTTTTATCAGGAAATTTATCATGAATGCTTATAAATAGAGCTATAAAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGCTACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTTT GATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCC ] [-] EMBL AU032739 [ TATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGNTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAANAGANTCAAATACTGGTATAAGATTCTTTGACCTAGANTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTG ] [-] EMBL CB659923 [ AAGAGATTCAAATACTGGTATAAGATTCTATGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTGCAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAACAGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTTACTGTTTTCTCCGATGTCAAAATCACTATATACAAAACTCTCAGCAGCGTCTCTTCGATTTCTTTTATGACAAACATCCCACTTTTGAAGAGCCTCAATAATAAACCTAGTGTCAGTTTCTCTTTGTGATCCATAAGGAATGGCACTCGAGGGAAAATCAATTCCAGGATCCTGCTCTGCAGAGCGATGGAGAACATACTGAATGATGCTTCCAGATGGAGAAAATACTAGTAAATGATACTTCATGCAAGGCGAACTTCCATCTGAGTTTTTGACGGCACCCTTGCAATTGTGAAATGTTGAAGCAATAGCACCAGAAATT] consensusID : consensus_10359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTTTTTTTTGTTACCTTTGATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTGCAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTNAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTGCAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAACAGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTTACTGTTTTCTCCGAT] [+] EMBL CA759795 [TTTTTTTTTGTTACCTTTGATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTTATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGAACGGGGGTTAACATTTGGGTTCTTATTTGCAGCACCACCACTATCTTCTACTAAACATTGACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGAACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTNAAGCAATCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAGAGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTTTTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCCCATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTGCAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAACAGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTTACTGTTTTCTCCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10359#0 TCTCTTTTTTTATTCACAAATTAAGAGCTATTATTGAAAATGCCATGAACAATCTTGTTA 60 consensus_10359#1 ------------------------------------------------------------ consensus_10359#0 TGTGCACGTTCTTTTGTAAGATGGAAACCCAACTTCACAGCACCACCGCTCCCATACCCA 120 consensus_10359#1 ------------------------------------------------------------ consensus_10359#0 TTGGGCCTTAATTCGACCTCCCCTTCATTTTTTTATCAGTAAATTTATCATGAATGCTTA 180 consensus_10359#1 ------------------------------------------------------------ consensus_10359#0 TAAATAGAGCTATAGAAGAGAGGTCAAGAACTCCAGGAGGAGAAATGAAAGAATAGCAGC 240 consensus_10359#1 ------------------------------------------------------------ consensus_10359#0 TACACACGCACAATGAAGACTTGCGATTCAAGAAGCTCCTCCATCACCAGTGATCGTCTT 300 consensus_10359#1 -------------------------------------------TTTTTTTTTGTTACCTT 17 * * * *** consensus_10359#0 TGATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTT 360 consensus_10359#1 TGATCACAGTTGCTATCACAAATCTGGGAGTTGCTCTCTGTCTTCACAATCCTCTTTGTT 77 ************************************************************ consensus_10359#0 ATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGA 420 consensus_10359#1 ATTTACAAATCCGAGCTGGGCCTCTGTGTTAAGGCTCTGAGTATTATTTACAAGCTCGGA 137 ************************************************************ consensus_10359#0 ACGGGGGTTAACATTTGGGTTCTTATTTACAGCACCACCACTATCTTCTACTAAACATTG 480 consensus_10359#1 ACGGGGGTTAACATTTGGGTTCTTATTTGCAGCACCACCACTATCTTCTACTAAACATTG 197 **************************** ******************************* consensus_10359#0 ACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGA 540 consensus_10359#1 ACCAAAACCATTATCATCAGTGCTAATTGGGCCTTCAGACATGCAGTCCAAAGAGCTAGA 257 ************************************************************ consensus_10359#0 ACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTGAAGCAA 600 consensus_10359#1 ACTGCTTCTGCAGGAGAGTCTACCGTCCTCTGAAAATCCGGACTTTTGACGCTNAAGCAA 317 ***************************************************** ****** consensus_10359#0 TCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAG 660 consensus_10359#1 TCCATATTTGTTACTATCAGGTGTGCTCACCCTTGACTGTTGAAACCTGGATGTATGAAG 377 ************************************************************ consensus_10359#0 AGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTT 720 consensus_10359#1 AGATTCAAATACTGGTATAAGATTCTTTGACCTAGATTCAATATTGCGAGTCTGGAGCTT 437 ************************************************************ consensus_10359#0 TTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCC 780 consensus_10359#1 TTCTATTTCAAGTTCACCTGAAATTATACCAGTATTGTCTGCTTCTAGAGCTCCATCCCC 497 ************************************************************ consensus_10359#0 CATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTG 840 consensus_10359#1 CATTACTTGAAAATGCATCCCAGATCTTGACCAGAGTGGTGTTGGAACAACATGAGTCTG 557 ************************************************************ consensus_10359#0 CAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAAC 900 consensus_10359#1 CAATTCACTCTCAGAAATATAAAAATTATGATTCTCATCACCTAGCTTCTGCTTTTCAAC 617 ************************************************************ consensus_10359#0 AGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTT 960 consensus_10359#1 AGCAGTGCCATTGGATGGATAAACACTAGTTCCTTTCTTTGCCACTTTCTGAAAAAGTTT 677 ************************************************************ consensus_10359#0 ACTGTTTTCTCCGATGTCAAAATCACTATATACAAAACTCTCAGCAGCGTCTCTTCGATT 1020 consensus_10359#1 ACTGTTTTCTCCGAT--------------------------------------------- 692 *************** consensus_10359#0 TCTTTTATGACAAACATCCCACTTTTGAAGAGCCTCAATAATAAACCTAGTGTCAGTTTC 1080 consensus_10359#1 ------------------------------------------------------------ consensus_10359#0 TCTTTGTGATCCATAAGGAATGGCACTCGAGGGAAAATCAATTCCAGGATCCTGCTCTGC 1140 consensus_10359#1 ------------------------------------------------------------ consensus_10359#0 AGAGCGATGGAGAACATACTGAATGATGCTTCCAGATGGAGAAAATACTAGTAAATGATA 1200 consensus_10359#1 ------------------------------------------------------------ consensus_10359#0 CTTCATGCAAGGCGAACTTCCATCTGAGTTTTTGACGGCACCCTTGCAATTGTGAAATGT 1260 consensus_10359#1 ------------------------------------------------------------ consensus_10359#0 TGAAGCAATAGCACCAGAAATT 1282 consensus_10359#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||