These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 745 fasta sequence [TTCCCCGACGCCGGCGG-GCAAGAGGCGAGCAGCGCGGGGGGCCGGCGGCGCCAGCGGTGAGCAGGCAAGCAGCGGAGCACGGGTGACGGCGCGTCCGCGAGCAAGAGCAGCCGAGCAGGTTGCAGACAGGCGGCCGGCCGCCGGCGACGCCACGGGAGCGCGCGTGACCAGGATCTGCTCCTGACCAGGCAGAGCAATAGGCCAGCAGCAGGCCGGCGGCTACAAAACATCTAAACAAAGGAATCAATCTGAATTAAGAAGATTAGCGTGATGTCTTTCCTCAGGCTGTTACCTC-AAAGGTTGCCGCAACTTTTTAGGCAGATGGAGCAA-GATGTTGAGACAGTGATAAACGTTCTACAGCCAGGACCGATAGGGATTGTGGAGCACAAATTCACTGATGCAGAGATCCGCAATGCCCAAGCTGTAGTAAGGCGAGCAGTCGAGAATTGGCAGAAGAGCTCGACCCTTGAGAGAAATCTTGGTAGTGGTTCTTTCGCCAAATAGAACTAATGCCACCAACACATGACTTGGTGGATCAGCCGTACCGAGTATAAACGGGTTGTTAACTTGTTACG-------ACATCGCTTTCAAAACGTTGATATATTTTCTTCCTGAACGAATCCATGCAATCAGATGCATTATATGCAGTCTGTTCACTCTGTTGCCAATAAAAGTACTTTGAACTTTTGTTAATTGTTCAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGTAGCGTATCGTTGA] [+] EMBL C74256 [TTCCCCGACGCCGGCGG GCAAGAGGCGAGCAGCGCGNGGGGCCGGCGGCGCCAGCGGTGAGCAGGCAAGCAGCGGA CACGGGTGACGGCGCGTCCGCGAGCAAGAGCAGCCGAGCAGGTTGCAGACAGGCGGCCGGCCGCCGGCGACGCCACGGGAGCGCGCGTGACCAGGATCTGCTCCTGACCAGGCAGAGCAATAGGCCAGCAGCAGGCCGGCGGCTACAAAACATCTAAACAAAGGAATNAATCTGAATTAAGAAGATTAGCGTGATGTCTTTCCTCAGGCTGTTACCTC AAAGGTTGCCGCAACTTTTTAAGCAGATGG GCAANAATGTTGAGACAGTna ] [+] EMBL AK064879 [ CCGGCGGCGCAAGAGGCGAGCAGCGCGGGGGGCCGGCGGCGCCAGCGGTGAGCAGGCAAGCAGCGGAGCACGGGTGACGGCGCGTCCGCGAGCAAGAGCAGCCGAGCAGGTTGCAGACAGGCGGCCGGCCGCCGGCGACGCCACGGGAGCGCGCGTGACCAGGATCTGCTCCTGACCAGGCAGAGCGATAGGCCAGCAGCAGGCCGGCGGCTACAAAACATCTAAACAAAGGAATCAATCTGAATTAAGAAGATTAGCGTGATGTCTTTCCTCAGGCTGTTACCTC AAAGGTTGCCGCAACTTTTT AGATGGAGCAA GATGTTGAGACAGTGATAAACGTTCTACAGCCAGGACCGATAGGGATTGTGGAGCACAAATTCACTGATGCAGAGATCCGCAATGCCCAAGCTGTAGTAAGGCGAGCAGTCGAGAATTGGCAGAAGAGCTCGACCCTTGAGAGAAATCTTGGTATTGGTTCTTTCGCCAAATAGAACTAATGCCACCAACACATGACTTGGTGGATCAGCCGTACCGAGTATAAACGGGTTGTTAACTTGTTACG ACATCGCTTTCAAAACGTTGATATATTTTCTTCCTGAACGAATCCATGCAATCAGATGCATTATATGCAGTCTGTTCACTCTGTTGCCAATAAAAGTACT ] [+] EMBL BF430787 [ CGCGGGGGGCCGGCGGCGCCAGCGGTGAGCAGGCAAGCAGCGGAGCACGGGTGACGGCGCGTCCGCGAGCAAGAGCAGCCGAGCAGGTTGCAGACAGGCGGCCGGCCGCCGGCGACGCCACGGGAGCGCGCGTGACCAGGATCTGCTCCTGACCAGGCAGAGCAATAGGCCAGCAGCAGGCCGGCGGCTACAAAACATCTAAACAAAGGAATCAATCTGAATTAAGAAGATTAGCGTGATGTCTTTCCTCAGGCTGTTACCTC GAAGGTTGCCGCAACTTTTTAGGCAGATGGAGCAA GATGTTGAGACAGTGATAAACGTTCTACAGCCAGGACCGATAGGGATTGTGGAGCACAAATTCACTGATGCAGAGATCCGCAATGCCCAAGCTGTAGTAAGGCGAGCAGTCGAGAATTGGCAGAAGAGCTCGACCCTTGAGAGAAATCTTGGTAGTGGTTCTTTCGCCAAATAGAACTAATGCCACCAACACATGACTTGGTGGATCAGCCGTACCGAGTATAAACGGGTTGTTAACTTGTTACGATTTGAAACATCGCTTTCAAAACGTTGATATATTTTCTTCCTGAACGAATCCATGCAATCAGATGAATTATATGCAGTCTGTTCACTCTGTTGCCAATAAAAGTACTTTGAACTTTTG ] [-] EMBL CF323432 [ AATAGGCCAGCAGCAGGCCGGCGGCTACAAAACATCTAAACAAAGGAATCAATCTGAATTAAGAAGATTAGCGTGATGTCTTTCCTCAGGCTGTTACCTCAAAAGGTTGCCGCAACTTTTTAGGCAGATGGAGCAA GATGTTGAGACAGTGATAAACGTTCTACAGCCAGGACCGATAGGGATTGTGGAGCACAAATTCACTGATGCAGAGATCCGCAATGCCCAAGCTGTAGTAAGGCGAGCAGTCGAGAATTGGCAGAAGAGCTCGACCCTTGAGAGAAATCTTGGTAGTGGTTCTTTCGCCAAATAGAACTAATGCCACCAACACATGACTTGGTGGATCAGCCGTACCGAGTATAAACGGGTTGTTAACTTGTTACG ACATCGCTTTCAAAACGTTGATATATTTTCTTCCTGAACGAATCCATGCAATCAGATGCATTATATGCAGTCTGTTCACTCTGTTGCCAATAAAAGTACTTTGAACTTTTGTTAA AAAAAAAAAAAAAA ] [+] EMBL AU101410 [ AATAGGCCAGCAGCAGGCCGGCGGCTACAAAACATCTAAACAAAGGAATCAATCTGAATTAAGAAGATTAGCGTGATGTCTTTCCTCAGGCTGTTACCTC AAAGGTTGCCGCAACTTTTTAGGCAGATGGAGCAA GATGTTGAGACAGTGATAAACGTTCTACAGCCAGGACCGATAGGGATTGTGGAGCACAAATTCACTGATGCAGAGATCCGCAATGCCCAAGCTGTAGTAAGGCGAGCAGTCGAGAATTGGCAGAAGAGCTCGACCCTTGAGAGAAATCTTGGTAGTGGTTCTTTCGCCAAATAGAACTAATGCCACCAACACATGACTTGGTGGATCAGCCGTACCGAGTATAAACGGGTTGTTAACTTGTTACG ACATCGCTTTCAAAACGTTGATATATTTTCTTCCTGAACGAATCCATGCAATCAGATGCATTATATGCAGTCTGTTCACTCTGTTGCCAATAAAAGTACTTTGAACTTTTGTTAATTGTTCAAAAAAAAAAA ] [+] EMBL CF327926 [ CTCAGGCTGTTACCTC AAAGGTTGCCGCAACTTTTTAGGCAGATGGAGCAA GATGTTGAGACAGTGATAAACGCTCTACAGCCAGGACCGATAGGGATTGTGGAGCACAAATTCACTGATGCAGAGATCCGCAATGCCCAAGCTGTAGTAAGGCGAGCAGTCGAGAATTGGCAGAAGAGCTCGACCCTTGAGAGAAATCTTGGTAGTGGTTCTTTCGCCAAATAGAACTAATGCCACCAACACATGACTTGGCGGATCAGCCGTACCGAGTATAAACGGGTTGTTAACTTGTTACG ACATCGCTTTCAAAACGTTGATATATTTTCTTCCTGAACGAATCCATGCAATCAGATGCATTATATGCAGTCTGTTCACTCTGTTGCCAATAAAAGTACTTTGAACTTTTGTTAATTGTTCAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGTAGCGTA ] [-] EMBL CF327927 [ TCAGGCTGTTACCTC AAAGGTTGCCGCAACTTTTTAGGCAGATGGAGCAA GATGTTGAGACAGTGATAAACGCTCTACAGCCAGGACCGATAGGGATTGTGGAGCACAAATTCACTGATGCAGAGATCCGCAATGCCCAAGCTGTAGTAAGGCGAGCAGTCGAGAATTGGCAGAAGAGCTCGACCCTTGAGAGAAATCTTGGTAGTGGTTCTTTCGCCAAATAGAACTAATGCCACCAACACATGACTTGGCGGATCAGCCGTACCGAGTATAAACGGGTTGTTAACTTGTTACG ACATCGCTTTCAAAACGTTGATATATTTTCTTCCTGAACGAATCCATGCAATCAGATGCATTATATGCAGTCTGTTCACTCTGTTGCCAATAAAAGTACTTTGAACTTTTGTTAATTGTTCAAAAAAAAAAAAAAAAAAAACTGTCATGCCGTTAGTAGCGTATCGTTGA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||