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Oryza sativa
cluster # 10371 cluster # 10371       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10371#0 length = 2184 sequences # 3  
consensus_10371#1 length = 546 sequences # 2  
consensus_10371#2 length = 433 sequences # 1  
consensus_10371#3 length = 192 sequences # 1  

consensusID : consensus_10371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2184
fasta sequence
                              [CTCTCCAGAACCGTCCCGCCGCCGCGTCGCCTTCCCACGCGCTGGGATCACGTTTAGGGTTTTTGAATGGGGTACCAGGTGCCCCGGGGGCGCGTGAGGCTTCGGCGTTCACTACGGCCGGCTTCCTCGCCGCCGGCGCGGCCGCCGCTCTCGCGTCTCTGCCGGTGGCCTACGCCGATGCCAATGAGGGCGTTGTAGACTCGGCTGTAAGCTCTGATGCGGCTGTGAAACCTGTGAACCCTGATGCGGCTGTGAGCTCTGATGTGGCGGTGGGGGAGGATCTGGCCCATAAGGAGAGGAAGAGGATAATAGAGCTCATTCAGAGCCGAGGGATGCCACACGGGTCATACCCGCAATTTGATGTGGCAGTGAAGGGCCAAAAGGTGGTCGTTAAATTTAATGTACCATCAACTTGTAGCTTATCAGACCTTATTGTTGATCTCGTAACACATATCGGACTTGAGGCAGAACAAGGTGGTGGCGGCTCTGAGATGCTACTGCGTGCTTGGAACAGTGTAGCTGCACGTCAGATAACGTTGAACCCTCACAAGAAGACAACGAGCAATGGAGATGACAATGAAGATGATCTTTGTGTCTTGATATTTGAACCACTTGTGGGATCTCAATATTCTGTCAGTTCCTATGAAGTTGAATTCATCAAGCGTGGTGGATTTAGTTTGAGAGAGCTTGAAGCTTTGACAAGTGTTTTGAAATTAGTGGGCCAGAAAGATGTTAAGCAATCATCAGGGAAGGGCAATAAGTCATACACAACAAGAAAAGGAAATGGTCAGAGATCCAAGCATGTACCATCTATGGAAAAAACTATATCTGATTTAGAGGGTATGGG-AGTTCGGGTCTATGGATTTGATGAGACCTCAAGTATTCCAATGGATG-GTAGTGGTACTGTTATGTGGGAGAACATTGCTGGATATGAACCTCAGAAAAGGGAGATAGAGGACACTATCCTCTTGGCTTTACAGAGCCCTGAAGTGTACGATGAAATTGCCCGTGCTACACGATGCAAATTTGAGACAAACCGACCTCGAGCTGTTTTGTTTGAAGGCCCACCAGGCACTGGTAAGACTTCTTCTGCTCGAGTTATTGCCAAGCAAGCTGGAGTTCCGCTGTTATATGTGCCACTGGAAATCATAATGTCAAAATATTATGGTGAAAGCGAGCGCCTTTTGGGATCTGTTTTTTCACTTGCCAATGACCTTCCTGATGGAGGTATAATTTTTCTAGATGAGGTAGACTCTTTTGCTAGCGCTCGAGATAGTGAAATGCATGAAGCTACACGAAGGATATTATCAGTAATTTTGCGGCAGATTGATGGGTTTGAGCAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAAAGGAAGACCTTGATCCTGCCCTCATCAGCCGTTTTGATTCAATCATTTGTTTTGACTTACCGGATCAGCAAACCCGCGCAGAAATATCTGCCCAGTATGCAAAACATTTGACTAAATCTGAATTGTTTCAATTTTCATTGGCCACTGAAGAGATGTCAGGAAGAGATATCAGGGATATTTGCCAGCAAGCAGAAAGACATTGGGCATCAAAGTTGATAAGGGGACAAGTACCAAAAAATGATAAGGGGGAGCCGAGTCTTCCTCCAGTCGAAGAGTATGTTGCATGTTCTGAACAACGCAGAAGATCTTTGCCGAATAGAACAAGTAAGGAATCAAGACTCCCTGCTTTGAAGTTAGCTTGAGGAATGTACTTATCTTTACAGTTCCACACCATATGTTAAATGATGTGTATATAGATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAATTTTGATTGTCCTATCACAGCACGACAAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATGCATTTTGCAATGTTTGCTGGCCGCCTTGGGTCGCGGTCCTCGAGGATAGGTGATCCGGACCAACAACTCTGGAACTGTCGAGATATCTGCTAGGAAATACTCCTATTTTCCTGAGAAAGCGTAGAAGTTGTGTACGTCAATGCATTAAGAGACAATAAAACAACACAATGTTCTTACAAAGAAATGTACATTGCCTTGGAACTTGTGTACCTATATGCAAGCATGCAGTATTGCCAAATACAATGGTCATAACAGAGAATGGAA]

[+] EMBL AK067833             [CTCTCCAGAACCGTCCCGCCGCCGCGTCGCCTTCCCACGCGCTGGGATCACGTTTAGGGTTTTTGAATGGGGTACCAGGTGCCCCGGGGGCGCGTGAGGCTTCGGCGTTCACTACGGCCGGCTTCCTCGCCGCCGGCGCGGCCGCCGCTCTCGCGTCTCTGCCGGTGGCCTACGCCGATGCCAATGAGGGCGTTGTAGACTCGGCTGTAAGCTCTGATGCGGCTGTGAAACCTGTGAACCCTGATGCGGCTGTGAGCTCTGATGTGGCGGTGGGGGAGGATCTGGCCCATAAGGAGAGGAAGAGGATAATAGAGCTCATTCAGAGCCGAGGGATGCCACACGGGTCATACCCGCAATTTGATGTGGCAGTGAAGGGCCAAAAGGTGGTCGTTAAATTTAATGTACCATCAACTTGTAGCTTATCAGACCTTATTGTTGATCTCGTAACACATATCGGACTTGAGGCAGAACAAGGTGGTGGCGGCTCTGAGATGCTACTGCGTGCTTGGAACAGTGTAGCTGCACGTCAGATAACGTTGAACCCTCACAAGAAGACAACGAGCAATGGAGATGACAATGAAGATGATCTTTGTGTCTTGATATTTGAACCACTTGTGGGATCTCAATATTCTGTCAGTTCCTATGAAGTTGAATTCATCAAGCGTGGTGGATTTAGTTTGAGAGAGCTTGAAGCTTTGACAAGTGTTTTGAAATTAGTGGGCCAGAAAGATGTTAAGCAATCATCAGGGAAGGGCAATAAGTCATACACAACAAGAAAAGGAAATGGTCAGAGATCCAAGCATGTACCATCTATGGAAAAAACTATATCTGATTTAGAGGGTATGGG AGTTCGGGTCTATGGATTTGATGAGACCTCAAGTATTCCAATGGATG GTAGTGGTACTGTTATGTGGGAGAACATTGCTGGATATGAACCTCAGAAAAGGGAGATAGAGGACACTATCCTCTTGGCTTTACAGAGCCCTGAAGTGTACGATGAAATTGCCCGTGCTACACGATGCAAATTTGAGACAAACCGACCTCGAGCTGTTTTGTTTGAAGGCCCACCAGGCACTGGTAAGACTTCTTCTGCTCGAGTTATTGCCAAGCAAGCTGGAGTTCCGCTGTTATATGTGCCACTGGAAATCATAATGTCAAAATATTATGGTGAAAGCGAGCGCCTTTTGGGATCTGTTTTTTCACTTGCCAATGACCTTCCTGATGGAGGTATAATTTTTCTAGATGAGGTAGACTCTTTTGCTAGCGCTCGAGATAGTGAAATGCATGAAGCTACACGAAGGATATTATCAGTAATTTTGCGGCAGATTGATGGGTTTGAGCAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAAAGGAAGACCTTGATCCTGCCCTCATCAGCCGTTTTGATTCAATCATTTGTTTTGACTTACCGGATCAGCAAACCCGCGCAGAAATATCTGCCCAGTATGCAAAACATTTGACTAAATCTGAATTGTTTCAATTTTCATTGGCCACTGAAGAGATGTCAGGAAGAGATATCAGGGATATTTGCCAGCAAGCAGAAAGACATTGGGCATCAAAGTTGATAAGGGGACAAGTACCAAAAAATGATAAGGGGGAGCCGAGTCTTCCTCCAGTCGAAGAGTATGTTGCATGTTCTGAACAACGCAGAAGATCTTTGCCGAATAGAACAAGTAAGGAATCAAGACTCCCTGCTTTGAAGTTAGCTTGAGGAATGTACTTATCTTTACAGTTCCACACCATATGTTAAATGATGTGTATATAGATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAATTTTGATTGTCCTATCACAGCACGACAAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATGCATTTTGCAATGTTTGCTGGCCGCCTTGGGTCGCGGTCCTCGAGGATAGGTGATCCGGACCAACAACTCTGGAACTGTCGAGATATCTGCTAGGAAATACTCCTATTTTCCTGAGAAAGCGTAGAAGTTGTGTACGTCAATGCATTAAGAGACAATAAAACAACACAATGTTCTTACAAAGAAATGTACATTGCCTTGGAACTTGTGTACCTATATGCAAGCATGCAGTATTGCCAAATACAATGGTCATAACAGAGAATGGAA]
[+] EMBL CF323546             [                                                                                                                                                                                                                                                                                                                                                                                                                                 GCTTATCAGACCTTATTGTTGATCTCGTAACACATATCGGACTTGAGGCAGAACAAGGTGGTGGCGGCTCTGAGATGCTACTGCGTGCTTGGAACAGTGTAGCTGCACGTCAGATAACGTTGAACCCTCACAAGAAGACAACGAGCAATGGAGATGACAATGAAGATGATCTTTGTGTCTTGATATTTGAACCACTTGTGGGATCTCAATATTCTGTCAGTTCCTATGAAGTTGAATTCATCAAGCGTGGTGGATTTAGTTTGAGAGAGCTTGAAGCTTTGACAAGTGTTTTGAAATTAGTGGGCCAGAAAGATGTTAAGCAATCATCAGGGAAGGGCAATAAGTCATACACAACAAGAAAAGGAAATGGTCAGAGATCCAAGCATGTACCATCTATGGAAAAAACTATATCTGATTTAGAGGGTTGGGGAAGTTCGGGTCTATGGATTTGATGAGACCTCAAGTATTCCAATGGATGNGTAGTGGTACTGTTATGTGGGAGAACATTGCTGGATATGAACCTCAGAAAAGGGAGATAGAGGACACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF324601             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCAGAAAAGGGAGATAGAGGACACTATCCTCTTGGCTTTACAGAGCCCTGAAGTGTACGATGAAATTGCCCGTGCTACACGATGCAAATTTGAGACAAACCGACCTCGAGCTGTTTTGTTTGAAGGCCCACCAGGCACTGGTAAGACTTCTTCTGCTCGAGTTATTGCCAAGCAAGCTGGAGTTCCGCTGTTATATGTGCCACTGGAAATCATAATGTCAAAATATTATGGTGAAAGCGAGCGCCTTTTGGGATCTGTTTTTTCACTTGCCAATGACCTTCCTGATGGAGGTATAATTTTTCTAGATGAGGTAGACTCTTTTGCTAGCGCTCGAGATAGTGAAATGCATGAAGCTACACGAAGGATATTATCAGTAATTTTGCGGCAGATTGATGGGTTTGAGCAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAAAGGAAGACCTTGATCCTGCCCTCATCAGCCGGTTTGATTCAATCATTTGTTTTGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_10371#0 CTCTCCAGAACCGTCCCGCCGCCGCGTCGCCTTCCCACGCGCTGGGATCACGTTTAGGGT TTTTGAATGGGGTACCAGGTGCCCCGGGGGCGCGTGAGGCTTCGGCGTTCACTACGGCCG GCTTCCTCGCCGCCGGCGCGGCCGCCGCTCTCGCGTCTCTGCCGGTGGCCTACGCCGATG CCAATGAGGGCGTTGTAGACTCGGCTGTAAGCTCTGATGCGGCTGTGAAACCTGTGAACC CTGATGCGGCTGTGAGCTCTGATGTGGCGGTGGGGGAGGATCTGGCCCATAAGGAGAGGA AGAGGATAATAGAGCTCATTCAGAGCCGAGGGATGCCACACGGGTCATACCCGCAATTTG ATGTGGCAGTGAAGGGCCAAAAGGTGGTCGTTAAATTTAATGTACCATCAACTTGTAGCT TATCAGACCTTATTGTTGATCTCGTAACACATATCGGACTTGAGGCAGAACAAGGTGGTG GCGGCTCTGAGATGCTACTGCGTGCTTGGAACAGTGTAGCTGCACGTCAGATAACGTTGA ACCCTCACAAGAAGACAACGAGCAATGGAGATGACAATGAAGATGATCTTTGTGTCTTGA TATTTGAACCACTTGTGGGATCTCAATATTCTGTCAGTTCCTATGAAGTTGAATTCATCA AGCGTGGTGGATTTAGTTTGAGAGAGCTTGAAGCTTTGACAAGTGTTTTGAAATTAGTGG GCCAGAAAGATGTTAAGCAATCATCAGGGAAGGGCAATAAGTCATACACAACAAGAAAAG GAAATGGTCAGAGATCCAAGCATGTACCATCTATGGAAAAAACTATATCTGATTTAGAGG GTATGGGAGTTCGGGTCTATGGATTTGATGAGACCTCAAGTATTCCAATGGATGGTAGTG GTACTGTTATGTGGGAGAACATTGCTGGATATGAACCTCAGAAAAGGGAGATAGAGGACA CTATCCTCTTGGCTTTACAGAGCCCTGAAGTGTACGATGAAATTGCCCGTGCTACACGAT GCAAATTTGAGACAAACCGACCTCGAGCTGTTTTGTTTGAAGGCCCACCAGGCACTGGTA AGACTTCTTCTGCTCGAGTTATTGCCAAGCAAGCTGGAGTTCCGCTGTTATATGTGCCAC TGGAAATCATAATGTCAAAATATTATGGTGAAAGCGAGCGCCTTTTGGGATCTGTTTTTT CACTTGCCAATGACCTTCCTGATGGAGGTATAATTTTTCTAGATGAGGTAGACTCTTTTG CTAGCGCTCGAGATAGTGAAATGCATGAAGCTACACGAAGGATATTATCAGTAATTTTGC GGCAGATTGATGGGTTTGAGCAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAA AGGAAGACCTTGATCCTGCCCTCATCAGCCGTTTTGATTCAATCATTTGTTTTGACTTAC CGGATCAGCAAACCCGCGCAGAAATATCTGCCCAGTATGCAAAACATTTGACTAAATCTG AATTGTTTCAATTTTCATTGGCCACTGAAGAGATGTCAGGAAGAGATATCAGGGATATTT GCCAGCAAGCAGAAAGACATTGGGCATCAAAGTTGATAAGGGGACAAGTACCAAAAAATG ATAAGGGGGAGCCGAGTCTTCCTCCAGTCGAAGAGTATGTTGCATGTTCTGAACAACGCA GAAGATCTTTGCCGAATAGAACAAGTAAGGAATCAAGACTCCCTGCTTTGAAGTTAGCTT GAGGAATGTACTTATCTTTACAGTTCCACACCATATGTTAAATGATGTGTATATAGATTT TAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAATTTTGA TTGTCCTATCACAGCACGACAAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATG CATTTTGCAATGTTTGCTGGCCGCCTTGGGTCGCGGTCCTCGAGGATAGGTGATCCGGAC CAACAACTCTGGAACTGTCGAGATATCTGCTAGGAAATACTCCTATTTTCCTGAGAAAGC GTAGAAGTTGTGTACGTCAATGCATTAAGAGACAATAAAACAACACAATGTTCTTACAAA GAAATGTACATTGCCTTGGAACTTGTGTACCTATATGCAAGCATGCAGTATTGCCAAATA CAATGGTCATAACAGAGAATGGAA



consensusID : consensus_10371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 546
fasta sequence
                              [CAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAAAGGAGGACCTTGATCCTGCCCTCATCAGCCGTTTTGATTCAATCATTTGTTTTGACTTACCGGATCAGCAAACCCGCGCAGAAATATCTGCCCAGTATGCAAAACATTTGACTAAATCTGAATTGTTTCAATTTTCATTGGCCACTGAAGAGTAAGTCCTTTCTGAACCTTCTAGCTCATGGTCTGCATATTTATTTTACCTGTTCATGTCTAGCTGATTGGGCACTTCAAATTTTGATGTTGCATTGGAGTCCTATAGATACTTATCTACCCAGTGTCTTGTAAAGCTTGTTATTTTGGTTTAGTATATTTATGTTTTGTTAAATATATATAAAAGTCATGCTGTGTGATGCAGTCCAGGTTTAAAAATATGGTCCTGGAAACGACCACTATCAGGATTCAGCTAGTAGGTTCCTGGCAGTTTTTGGGCTAGGGTGAATTACCCTACTCTGTTAGGTGAACTTGACGCACATTTGTTTTAGAAACCAATTATTTTTCATTAAACA]

[+] EMBL BE039187             [CAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAAAGGAGGACCTTGATCCTGCCCTCATCAGCCGTTTTGATTCAATCATTTGTTTTGACTTACCGGATCAGCAAACCCGCGCAGAAATATCTGCCCAGTATGCAAAACATTTGACTAAATCTGAATTGTTTCAATTTTCATTGGCCACTGAAGAGTAAGTCCTTTCTGAACCTTCTAGCTCATGGTCTGCATATTTATTTTACCTGTTCATGTCTAGCTGATTGGGCACTTCAAATTTTGATGTTGCATTGGAGTCCTATAGATACTTATCTACCCAGTGTCTTGTAAAGCTTGTTATTTTGGTTTAGTATATTTATGTTTTGTTAAATATATATAAAAGTCATGCTGTGTGATGCAGTCCAGGTTTAAAAATATGGTCCTGGAAACGACCACTATCAGGATTCAGCTAGTAGGTTCCTGGCAGTTTTTGGGCTAGGGTGAATTACCCTACTCTGTTAGGTGAACTTGACGCACATTTGTTTTAGAAACCAATTATTTTTCATTAAACA]
[+] EMBL CA756517             [CAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAAAGGAGGACCTTGATCCTGCCCTCATCAGCCGTTTTGATTCAATCATTTGTTTTGACTTACCGGATCAGCAAACCCGCGCAGAAATATCTGCCCAGTATGCAAAACATTTGACTAAATCTGAATTGTTTCAATTTTCATTGGCCACTGAAGAGTAAGTCCTTTCTGAACCTTCTAGCTCATGGTCTGCATATTTATTTTACCTGTTCATGTCTAGCTGATTGGGCACTTCAAATTTTGATGTTGCATTGGAGTCCTATAGATACTTATCTACCCAGTGTCTTGTAAAGCTTGTTATTTTGGTTTAGTATATTTATGTTTTGTTAAATATATATAAAAGTCATGCTGTGTGATGCAGTCCAGGTTTAAAAATATGGTCCTGGAAACGACCACTATCAGGATTCAGCTAGTAGGTTCCTGGCAGTTTTTGGGCTAGGGTGAATTACCCTACTCTGTTAGGTGAACTTGACGCACATTTGTTTTAGAAACCAATTATTTTTCATTAAACA]


>consensus_10371#1 CAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAAAGGAGGACCTTGATCCTGCC CTCATCAGCCGTTTTGATTCAATCATTTGTTTTGACTTACCGGATCAGCAAACCCGCGCA GAAATATCTGCCCAGTATGCAAAACATTTGACTAAATCTGAATTGTTTCAATTTTCATTG GCCACTGAAGAGTAAGTCCTTTCTGAACCTTCTAGCTCATGGTCTGCATATTTATTTTAC CTGTTCATGTCTAGCTGATTGGGCACTTCAAATTTTGATGTTGCATTGGAGTCCTATAGA TACTTATCTACCCAGTGTCTTGTAAAGCTTGTTATTTTGGTTTAGTATATTTATGTTTTG TTAAATATATATAAAAGTCATGCTGTGTGATGCAGTCCAGGTTTAAAAATATGGTCCTGG AAACGACCACTATCAGGATTCAGCTAGTAGGTTCCTGGCAGTTTTTGGGCTAGGGTGAAT TACCCTACTCTGTTAGGTGAACTTGACGCACATTTGTTTTAGAAACCAATTATTTTTCAT TAAACA



consensusID : consensus_10371#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence
                              [NTNNGCCCTTCNGACGAGATTGGATGCACGATGTCAGGAAGAGATATCAGGGATATTTGCCACAAGCAGAAAGACATTGGGCATCAAAGTTGATAAGGGGACAAGTACCAAAAAATGATAAGGGGGAGCCGAGTCTTCCTCCAGTCGAANAGTATGTTGCATGTTCTGAACAACGCAGAAGATCTNNGCCGAATAGAACAAGTAAGGAATCAAGACTCCCTGCTTTGAAGTTAGCTTGAGGAATGTACTTATCTTTACAGTTCCACACCATATGTTAAATGATGTGTNTNTNTATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAATTTTGATTGTCCTATCACAGCACGACAAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATGCATTTTGCNAAAAAAA]

[+] EMBL AA751583             [NTNNGCCCTTCNGACGAGATTGGATGCACGATGTCAGGAAGAGATATCAGGGATATTTGCCACAAGCAGAAAGACATTGGGCATCAAAGTTGATAAGGGGACAAGTACCAAAAAATGATAAGGGGGAGCCGAGTCTTCCTCCAGTCGAANAGTATGTTGCATGTTCTGAACAACGCAGAAGATCTNNGCCGAATAGAACAAGTAAGGAATCAAGACTCCCTGCTTTGAAGTTAGCTTGAGGAATGTACTTATCTTTACAGTTCCACACCATATGTTAAATGATGTGTNTNTNTATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAATTTTGATTGTCCTATCACAGCACGACAAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATGCATTTTGCNAAAAAAA]


>consensus_10371#2 NTNNGCCCTTCNGACGAGATTGGATGCACGATGTCAGGAAGAGATATCAGGGATATTTGC CACAAGCAGAAAGACATTGGGCATCAAAGTTGATAAGGGGACAAGTACCAAAAAATGATA AGGGGGAGCCGAGTCTTCCTCCAGTCGAANAGTATGTTGCATGTTCTGAACAACGCAGAA GATCTNNGCCGAATAGAACAAGTAAGGAATCAAGACTCCCTGCTTTGAAGTTAGCTTGAG GAATGTACTTATCTTTACAGTTCCACACCATATGTTAAATGATGTGTNTNTNTATTTTAG GCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAATTTTGATTG TCCTATCACAGCACGACAAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATGCAT TTTGCNAAAAAAA



consensusID : consensus_10371#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGCACACCATATGTTAAATGATGTGTATATAGATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAATTTTGATTGTCCTATCACAGCACGACGAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATGCATTTTGCAAAA]

[+] EMBL BQ907595             [CCGCGGACGCGTGGGCGGACGCGTGGGCACACCATATGTTAAATGATGTGTATATAGATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAATTTTGATTGTCCTATCACAGCACGACGAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATGCATTTTGCAAAA]


>consensus_10371#3 CCGCGGACGCGTGGGCGGACGCGTGGGCACACCATATGTTAAATGATGTGTATATAGATT TTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAATTTTGA TTGTCCTATCACAGCACGACGAAACGTATAATTCTAGAGATGAAGTAACAGTGGGTAATG CATTTTGCAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CTCTCCAGAACCGTCCCGCCGCCGCGTCGCCTTCCCACGCGCTGGGATCACGTTTAGGGT 60
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      TTTTGAATGGGGTACCAGGTGCCCCGGGGGCGCGTGAGGCTTCGGCGTTCACTACGGCCG 120
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GCTTCCTCGCCGCCGGCGCGGCCGCCGCTCTCGCGTCTCTGCCGGTGGCCTACGCCGATG 180
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CCAATGAGGGCGTTGTAGACTCGGCTGTAAGCTCTGATGCGGCTGTGAAACCTGTGAACC 240
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CTGATGCGGCTGTGAGCTCTGATGTGGCGGTGGGGGAGGATCTGGCCCATAAGGAGAGGA 300
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      AGAGGATAATAGAGCTCATTCAGAGCCGAGGGATGCCACACGGGTCATACCCGCAATTTG 360
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      ATGTGGCAGTGAAGGGCCAAAAGGTGGTCGTTAAATTTAATGTACCATCAACTTGTAGCT 420
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      TATCAGACCTTATTGTTGATCTCGTAACACATATCGGACTTGAGGCAGAACAAGGTGGTG 480
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GCGGCTCTGAGATGCTACTGCGTGCTTGGAACAGTGTAGCTGCACGTCAGATAACGTTGA 540
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      ACCCTCACAAGAAGACAACGAGCAATGGAGATGACAATGAAGATGATCTTTGTGTCTTGA 600
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      TATTTGAACCACTTGTGGGATCTCAATATTCTGTCAGTTCCTATGAAGTTGAATTCATCA 660
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      AGCGTGGTGGATTTAGTTTGAGAGAGCTTGAAGCTTTGACAAGTGTTTTGAAATTAGTGG 720
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GCCAGAAAGATGTTAAGCAATCATCAGGGAAGGGCAATAAGTCATACACAACAAGAAAAG 780
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GAAATGGTCAGAGATCCAAGCATGTACCATCTATGGAAAAAACTATATCTGATTTAGAGG 840
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GTATGGGAGTTCGGGTCTATGGATTTGATGAGACCTCAAGTATTCCAATGGATGGTAGTG 900
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GTACTGTTATGTGGGAGAACATTGCTGGATATGAACCTCAGAAAAGGGAGATAGAGGACA 960
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CTATCCTCTTGGCTTTACAGAGCCCTGAAGTGTACGATGAAATTGCCCGTGCTACACGAT 1020
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GCAAATTTGAGACAAACCGACCTCGAGCTGTTTTGTTTGAAGGCCCACCAGGCACTGGTA 1080
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      AGACTTCTTCTGCTCGAGTTATTGCCAAGCAAGCTGGAGTTCCGCTGTTATATGTGCCAC 1140
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      TGGAAATCATAATGTCAAAATATTATGGTGAAAGCGAGCGCCTTTTGGGATCTGTTTTTT 1200
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CACTTGCCAATGACCTTCCTGATGGAGGTATAATTTTTCTAGATGAGGTAGACTCTTTTG 1260
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CTAGCGCTCGAGATAGTGAAATGCATGAAGCTACACGAAGGATATTATCAGTAATTTTGC 1320
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GGCAGATTGATGGGTTTGAGCAGGATAGACGTGTTGTGGTTATTGCTGCAACAAATAGAA 1380
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      AGGAAGACCTTGATCCTGCCCTCATCAGCCGTTTTGATTCAATCATTTGTTTTGACTTAC 1440
consensus_10371#1      ---------------------------------------------------CAGGATAGA 9
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CGGATCAGCAAACCCGCGCAGAAATATCTGCCCAGTATGCAAAACATTTGACTAAATCTG 1500
consensus_10371#1      CGTGTTGTGGTTATTGCTGCAACAAATAGAAAGGAGGACCTTGATCCTGCCCTCATCAGC 69
                                                                                   

consensus_10371#2      --NTNNGCCCTTCNGACGAGATTGGATGCACGATGTCAGGAAGAGATATCAGGGATATTT 58
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      AATTGTTTCAATTTTCATTGGCCACTGAAGAGATGTCAGGAAGAGATATCAGGGATATTT 1560
consensus_10371#1      CGTTTTGATTCAATCATTTGTTTTGACTTACCGGATCAGCAAACCCGCGCAGAAATATCT 129
                                                                                   

consensus_10371#2      GCC-A-CAAGCAGAAAGACATTGGGCATCAAAGTTGATA-AGGGGACAAGTACCAAAAAA 115
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GCC-AGCAAGCAGAAAGACATTGGGCATCAAAGTTGATA-AGGGGACAAGTACCAAAAAA 1618
consensus_10371#1      GCCCAGTATGCAAAACATTTGACTAAATCTGAATTGTTTCAATTTTCATTGGCCACTGAA 189
                                                                                   

consensus_10371#2      TGATAAGGGGGAGCCGAGTCTTCCTCCAGTCGAANAGTATGTTGCATGTTCTGAACAACG 175
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      TGATAAGGGGGAGCCGAGTCTTCCTCCAGTCGAAGAGTATGTTGCATGTTCTGAACAACG 1678
consensus_10371#1      GAGTAAGTCCTTTCTGAACCTTCTAGCTCATGGTCTGCATATTTATTTTACCTGTTCATG 249
                                                                                   

consensus_10371#2      CAGAAGATCTNNGCCGAATAGAACA--AGTAAGGAATCAAGACTCCCTGCTTTGAAGTTA 233
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CAGAAGATCTTTGCCGAATAGAACA--AGTAAGGAATCAAGACTCCCTGCTTTGAAGTTA 1736
consensus_10371#1      TCTAGCTGATTGGGCACTTCAAATTTTGATGTTGCATTGGAGTCCTATAGATACTTATCT 309
                                                                                   

consensus_10371#2      GCTTGAGGAAT-GTACTTATCTTTACAGTTCCACACCATATGTTAAATGATGTGTNTNTN 292
consensus_10371#3      ---CCGCGGAC-GCGTGGGCGGACGCGTGGGCACACCATATGTTAAATGATGTGTATATA 56
consensus_10371#0      GCTTGAGGAAT-GTACTTATCTTTACAGTTCCACACCATATGTTAAATGATGTGTATATA 1795
consensus_10371#1      ACCCAGTGTCTTGTAAAGCTTGTTATTTTGGTTTAGTATAT-TTATGTTTTGT-TAAATA 367
                              *    *                     *  **** ***  *  *** *   * 

consensus_10371#2      TATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAAT 352
consensus_10371#3      GATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAA-T 115
consensus_10371#0      GATTTTAGGCATCTCTTCTCGTGACGCATGCCGGCGCATGAAAATTGCGTTTACCCAAAT 1855
consensus_10371#1      TATAT-AAAAGTCATGCTGTGTGATGCAGTCCAG-GTTTAAAAAT-ATGGTCCTGGAAAC 424
                        ** * *    **       **** ***  ** * *  * *****   * *     **  

consensus_10371#2      TTTGATTGTCCTATCACAGCACGACAAAACGTA-TAATTCTAGAGATGAAGTAACAGTGG 411
consensus_10371#3      TTTGATTGTCCTATCACAGCACGACGAAACGTA-TAATTCTAGAGATGAAGTAACAGTGG 174
consensus_10371#0      TTTGATTGTCCTATCACAGCACGACAAAACGTA-TAATTCTAGAGATGAAGTAACAGTGG 1914
consensus_10371#1      GACCACTATCAGGATTCAGCTAGTAGGTTCCTGGCAGTTTTTGGGCTAGGGTGAATTACC 484
                           * * **      ****  *      * *   * ** * * * *   ** *      

consensus_10371#2      GTAATGCATTTTGCNAAAAAAA-------------------------------------- 433
consensus_10371#3      GTAATGCATTTTGCAAAA------------------------------------------ 192
consensus_10371#0      GTAATGCATTTTGCAATGTTTGCTGGCCGCCTTGGGTCGCGGTCCTCGAGGATAGGTGAT 1974
consensus_10371#1      CTACTCTGTTAGGTGAACTTGACGCACATTTGTTTTAGAAACCAATTATTTTTCATTAAA 544
                        ** *   **  *  *                                            

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      CCGGACCAACAACTCTGGAACTGTCGAGATATCTGCTAGGAAATACTCCTATTTTCCTGA 2034
consensus_10371#1      CA---------------------------------------------------------- 546
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      GAAAGCGTAGAAGTTGTGTACGTCAATGCATTAAGAGACAATAAAACAACACAATGTTCT 2094
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------------------------------------
consensus_10371#3      ------------------------------------------------------------
consensus_10371#0      TACAAAGAAATGTACATTGCCTTGGAACTTGTGTACCTATATGCAAGCATGCAGTATTGC 2154
consensus_10371#1      ------------------------------------------------------------
                                                                                   

consensus_10371#2      ------------------------------
consensus_10371#3      ------------------------------
consensus_10371#0      CAAATACAATGGTCATAACAGAGAATGGAA 2184
consensus_10371#1      ------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)