These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 942 fasta sequence [GCGAGGGGCTGATGCTGTGTTTGCCTTCCAATTGAGAAATCCAGTACATAATGGGCATGCCCTGTTGATGAATGATACTAGAAGGCGCCTCTTGGAAATGGGCTTCAAGAATCCCATTCTACTGCTGCACCCTTTAGGTGGCTTCACGAAAGCTGATGATGTCCCGTTGCCTGTGAGAATGGAACAACACAGCAAGGTCTTAGAAGATGGTGTCCTTGATCCTGAGACTACTATAGTGTCTATTTTCCCCTCCCCGATGCATTATGCTGGTCCAACAGAAGTGCAATGGCATGCAAAGGCACGGATTAACGCTGGTGCCAATTTCTACATTGTGGGTCGTGATCCTGCTGGAATGGGCCATCCAACAGAGAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCATGGCTCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGGTAGCAGCATATGATACAGTGGCGAAGAAGATGGCCTTCTTTGATCCTTCA-CGGAGTAAAGATTTTCTGTTCATCTCAGGAACCA-AGATGCGGGCTTTTGCCAAAAGTGGAGAGAACCCTCCTGACGGTTTCATGTGCCCTGGTGGGTGGAAAGTTCTTGTGGACTACTACAATAGTTTGCAAACTGAAGAAGCGGCTGTGGCA-ACTGTATGAGAAAAACCTACTGGTTTGCTGAGATTGTTCAGTCGCGGCAGGCACAAGATCTTCAGATCTCTCAGAGATA-TTTTT-TT-TAGGTTGATATTGATTGATGCGATGAAATTGTTATTCCAATTCATCAATTTTTGTAATGTGGTATCATGAAGCTTGACATTAGAGCTCACTAGTGCTGGGTAAATTGAGGTGAAATTCCATTGTCATTGTTCTGCAACTGATTCGGTTCACGTACACAACAAATAAAGATGTTTTTTTTTTCAAAAAAAAAAAGA] [+] EMBL AK105831 [GCGAGGGGCTGATGCTGTGTTTGCCTTCCAATTGAGAAATCCAGTACATAATGGGCATGCCCTGTTGATGAATGATACTAGAAGGCGCCTCTTGGAAATGGGCTTCAAGAATCCCATTCTACTGCTGCACCCTTTAGGTGGCTTCACGAAAGCTGATGATGTCCCGTTGCCTGTGAGAATGGAACAACACAGCAAGGTTTTAGAAGATGGTGTCCTTGATCCTGAGACTACTATAGTGTCTATTTTCCCCTCCCCGATGCATTATGCTGGTCCAACAGAAGTGCAATGGCATGCAAAGGCACGGATTAACGCTGGTGCCAATTTCTACATTGTGGGTCGTGATCCAGCTGGAATGGGCCATCCAACAGAAAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCATGGCCCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGGTAGCAGCATATGATACAGTGGCGAAGAAGATGGCGTTCTTTGATCCTTCA CGGAGTAAAGATTTTCTGTTCATCTCAGGAACCA AGATGCGGGCTTTTGCGAAAAGTGGAGAGAACCCTCCTGACGGTTTCATGTGCCCTGGTGGGTGGAAAGTTCTTGTGGACTACTACAATAGTTTGCAAACCGAAGAAGCGGCTGTGGCA ACTGTATGAG AAACCTACTGGTTTGCTGAGATTGTTCAGTCGCGGCAGGCACAAGATCTTCAGATCTCTCAGAGATATTTTTT TT TAGGTTGATATTGATTGATGCGATGAAATTGTTATTCCAATTCATCAATTTTTGTAATGTGGTATCATGAAGCTTGACATTGGAACTCACTAGTGCTGGGTAAATTGAGCTGAAATTCCATTGTC ] [+] EMBL CF324064 [ gGAGAAATCCAGTACATAATGGGCATGCCCTGTTGATGAATGATACTAGAAGGCGCCTCTTGGAAATGGGCTTCAAGAATCCCATTCTACTGCTGCACCCTTTAGGTGGCTTCACGAAAGCTGATGATGTCCCGTTGCCTGTGAGAATGGAACAACACAGCAAGGTCTTAGAAGATGGTGTCCTTGATCCTGAGACTACTATAGTGTCTATTTTCCCCTCCCCGATGCATTATGCTGGTCCAACAGAAGTGCAATGGCATGCAAAGGCACGGATTAACGCTGGTGCCAATTTCTACATTGTGGGTCGTGATCCTGCTGGAATGGGCCATCCAACAGAGAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCATGGCTCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGGTAGCAGCATATGATACAGTGGCGAAGAAGATGGCCTTCTTTGATCC ] [-] EMBL CB617951 [ GGTGGCTTCACGAAAGCTGATGATGTCCCGTTGCCTGTGAGAATGGAACAACACAGCAAGGTCTTAGAAGATGGTGTCCTTGATCCTGAGACTACTATAGTGTCTATTTTCCCCTCCCCGATGCATTATGCTGGTCCAACAGAAGTGCAATGGCATGCAAAGGCACGGATTAACGCTGGTGCCAATTTCTACATTGTGGGTCGTGATCCTGCTGGAATGGGCCATCCAACAGAGAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCATGGCTCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGGTAGCAGCATATGATACAGTGGCGAAGAAGATGGCCTTCTTTGATCCTTCA CGGAGTAAAGATTTTCTGTTCATCTCAGGAACCA AGATGCGGGCTTTTGCCAAAAGTGGAGAGAACCCTCCTGACGGTTTCATGTGCCCTGGTGGGTGGAAAGTTCTTGTGGACTACTACAATAGTTTGCAAACTGAAGAAGCGGCTGTGGCA ACTGTATGAGAAAAACCTACTGGTTTGCTGAGATTGTTCAGTCGCGGCAGGCACAAGATCTTCAGATCTCTCAGAGATA TTTTT TT TAGGTTGATATTGATTGATGCGATGAAATTGTTATTCCAATTCATCAATTTTTGTAATGTGGTATCATGAAGCTTGACATTAGAGCTCACTAGTGCTGGGTAAATTGAGGTGAAATTCCATTGTCATTGTTCTGCAACTGATTCGGTTCACGTACACAACAAATAAAGATGTTTTTTT ] [-] EMBL CB622517 [ CGTTGCCTGTGAGAATGGAACAACACAGCAAGGTCTTAGAAGATGGTGTCCTTGATCCTGAGACTACTATAGTGTCTATTTTCCCCTCCCCGATGCATTATGCTGGTCCAACAGAAGTGCAATGGCATGCAAAGGCACGGATTAACGCTGGTGCCAATTTCTACATTGTGGGTCGTGATCCTGCTGGAATGGGCCATCCAACAGAGAAGAGGGATCTGTACAACCCAGATCATGGAAAGAAGGTCCTTAGCATGGCTCCAGGTTTAGAGAAACTCAACATATTGCCCTTCAAGGTAGCAGCATATGATACAGTGGCGAAGAAGATGGCCTTCTTTGATCCTTCA CGGAGTAAAGATTTTCTGTTCATCTCAGGAACCA AGATGCGGGCTTTTGCCAAAAGTGGAGAGAACCCTCCTGACGGTTTCATGTGCCCTGGTGGGTGGAAAGTTCTTGTGGACTACTACAATAGTTTGCAAACTGAAGAAGCGGCTGTGGCA ACTGTATGAGAAAAACCTACTGGTTTGCTGAGATTGTTCAGTCGCGGCAGGCACAAGATCTTCAGATCTCTCAGAGATA TTTTT TT TAGGTTGATATTGATTGATGCGATGAAATTGTTATTCCAATTCATCAATTTTTGTAATGTGGTATCATGAAGCTTGACATTAGAGCTCACTAGTGCTGGGTAAATTGAGGTGAAATTCCATTGTCATTGTTCTGCAACTGATTCGGTTCACGTACACAACAAATAAAGATG TTTTTTTTCCAAAAAAAAAAAGA] [+] EMBL BM418880 [ GGTACCACCATATGATCCAGTGNCGAAGAAGATGCCCTTCTTTGATCCTTCACCGGAGTAAAGATTTTCTGTTCATCTCAGGAACCACAGAT CGGGCTTTTGCCCAAAGTGGAGAGAACCCTCCTGACGGTTTCATGTGCCCTGGTGGGTGGAAAGTTCTTGTGGACTACTACAATAGTTT CCAACTGAAGAA CGGCTGTGGCACACTGTATGAGAAAAACCTACTGGTTTGCTGAGATTGTTCAGTCGCGGCAGGCACAAGATCTTCAGATCTCTCAGAGATA TTTTT TT TAGGTTGATATTGATTGATGCGATGAAATTGTTATTCCCATTCATCCATTTTTGTAATGTGGTATCATGAAGCTTGACATTAGAGCTCACTAGTGCTGGGTAAATTGAGGTGAAATTCCCTTGTCATTGTTCTCCAAaaaaaaaa ] [+] EMBL AU166393 [ ATCCTTCA CGGAGTAAAGATTTTCTGTTCATCTCAGGAACCA AGATGCGGGCTTTTGCGAAAAGTGGAGAGAACCCTCCTGACGGTTTCATGTGCCCTGGTGGGTGGAAAGTTCTTGTGGACTACTACAATAGTTTGCAAACCGAAGAAGCGGCTGTGGCA ACTGTATGAG AAACCTACTGGTTTGCTGAGATTGTTCAGTCGCGGCAGGCACAAGATCTTCAGATCTCTCAGAGATA TTTTT TT TAGGTTGATATTGATTGATGCGATGAAATTGTTATTCCAATTCATCAATTTTTGTAATGTGGTATCATGAAGCTTGACATTGGAACTCACTAGTGCTGGGTAAATTGAGCTGAAATTCCATTGTCATTGTTCTGCAACTGATCCGGTTCACCTACACAACAAATAAAGATGTTTTTTTTTTCAAAAAAAAAA ] [+] EMBL BQ907547 [ TCAGATCTCTCAGAGATA TTTTTGTTGTAGGTTGATATTGATTGATGCGATGAAATTGTTATTCCAATTCATCAACTTTTGTAATGTGGTATCATGAAGCTTGACATTAGAGCTCACTAGTGCTGGGTAAATTGAGGTGAAATTCCATTGTCATTGTTCTGCAACTGATTCGGTTCACCTACAC ACAAATAAAGATG TTTTTTTTCAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||