These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 838 fasta sequence [ACGAGGCTCTCGAAACCCCACGAACGCGACCACCGCCTCCCCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTCCGCGGCGCCCACGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGCCGTCGGCCCCGCCGCGCTCACCGACCCCCCGCCCTCAGGTGAAGAGGAGGTGGGGATTGATGGTTGGAACAGCATGGATAATTGTTATGCATTTTTGTACATCAAGGAGGAGAGGGGCAAGAAGAAACGGGTATTGGTAAAATGTCTGGTGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAA-GAACTATGGGAACATGTACAAAAAC-TTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCTGGCGCAGGCTTATATCTTCATAGGGGATTGGTGGGGGTGGCAGCATGCTTGTTGGGCAAACCATCCAGCTGTTTCCTTTTAATCCTTCCTGGCGCTTGGGGGGCCTGGAATGTCACCGGTGTCGTATGACCATTGGTCCACAAA] [+] EMBL BP184964 [ACGAGGCTCTCGAAACCCCACGAACGCGACCACCGCCTCCCCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTCCGCGGCGCCCACGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGCCGTCGGCCCCGCCGCGCTCACCGACCCCCCGCCCTCAGGTGAAGAGGAGGTGGGGATTGATGGTTGGAACAGCATGGATAATTGTTATGCATTTTTGTACATCAAGGAGGAGAGGGGCAAGAAGAAACGGGTATTGGTAAAATGTCTGGTGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAAGGAACTATGGGAACATGTACAAAAACTTTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGGA ] [+] EMBL BP184920 [ acgaggCCCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTCCGCGGCGCCCACGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGCCGTCGGCCCCGCCGCGCTCACCGACCCCCCGCCCTCAGGTGAAGAGGAGGTGGGGATTGATGGTTGGAACAGCATGGATAATTGTTATGCATTTTTGTACATCAAGGAGGAGAGGGGCAAGAAGAAACGGGTATTGGTAAAATGTCTGGTGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAA GAACTATGGGAACATGTACAAAAAC TTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGG ] [+] EMBL CA758452 [ GACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTCCGCGGCGCCCACGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGCCGTCGGCCCCGCCGCGCTCACCGACCCCCCGCCCTCAGGTGAAGAGGAGGTGGGGATTGATGGTTGGAACAGCATGGATAATTGTTATGCATTTTTGTACATCAAGGAGGAGAGGGGCAAGAAGAAACGGGTATTGGTAAAATGTCTGGTGATCGGTGATGTCCTTGCCATTGATGTCCTGGATCTTGAGGCACAGAATAAAGGCCCTTATAATATCCAGATCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAA GAACTACGGGAACATGTACAAAAAC TTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGGGAACTACTGAACCTGGCTTGGGTTATCCTTCCATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCTGGCGCAGGCTTATATCTTCATAGGGGATTGGTGGGGGTGGCAGCATGCTTGTTGGGCAAACCATCCAGCTGTTTCCTTTTAATCCTTCCTGGCGCTTGGGGGGCCTGGAATGTCACCGGTGTCGTATGACCATTGGTCCACAAA] consensusID : consensus_10395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [AACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCCTGGCGCAGGCTTCTATCCTCATAGTGGTATTGGTGGGGGGTGGCAGCATGCATGTTGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGCGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTCCCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGAGATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGCGAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGTATCAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF324466 [AACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCCTGGCGCAGGCTTCTATCCTCATAGTGGTATTGGTGGGGGGTGGCAGCATGCATGTTGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGCGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTCCCCACCGTTTCTGAATAACCCTGCCTTGCTTC ] [+] EMBL AU181868 [ CCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCNCCAGGTGGTCGTTATGATCCAATTGGTCCNCCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGNGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTTTTCCAGCCGGGGCCGCACGGGCCCTTTTGAGATTCAGAGGCCCNCCTCCTCCCCNCCGTTTTTGAATAACCCTGCCTTGCTTNTCATGCTGATCCAAAGAGCAGTTTGTGAGATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGCGAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGTATCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10395#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [AGTCTGATTTACATTTGTTTCATACAACAGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGCGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTCCCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGAGATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGCGAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGTATCAACCTATCTTTGTCACCCTTGCACACCTGTACTAATAGTGACCTGTGGGGTGGATTGCTGATGAAATGCAAACCCTCCTGTGGAAAAAAAAAGCTTCTCCTGTCGTCAAAAAAAAAA] [+] EMBL BP184742 [AGTCTGATTTACATTTGTTTCATACAACAGGTCCAAACGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCCTGGGAGTGTTCCACCAGGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTGAACCTTCTCGCTTTGTGAGGCGTCCGAGGCCTCCAGCTGGGACTACTCACCCAGACCTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTCCCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGAGATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGCGAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGTATCAACCTATCTTTGTCACCCTTGCACACCTGTACTAATAGTGACCTGTGGGGTGGATTGCTGATGAAATGCAAACCCTCCTGTGGAAAAAAAAAGCTTCTCCTGTCGTCAAAAAAAAAA] consensusID : consensus_10395#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [CCCACGAACGCGACCACCGCCTCCNCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTNCGCGGCGCCCACGACGGGGTCGCCTTCGCCGNCAACGTCGCGTTCCTCGNCGCCGGCTACTNCCTCTGCGCCGTCGGCCCCGCCGCGCTCAACGACCCCCCGGCCTNAAGTGAAGAGGAGGTGGGGATTNATGGTTGGAACANCAATGGATAATTGTTATGNATTTTTTGTACATCAAAGGAGGANGAAGGGGCAAAGAAGAAACGGGTATTTGGTAAAANTGTCTTTGTGATTCGGTGATGGTCCTTGGCAATTGATGTCCTGGGTTTTGAGTTANAAG] [+] EMBL OSC139 [CCCACGAACGCGACCACCGCCTCCNCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGACCGACGCCGCCGCGATGGCCGTCGTGAAGGCGGCGCGCCCGGCCTTNCGCGGCGCCCACGACGGGGTCGCCTTCGCCGNCAACGTCGCGTTCCTCGNCGCCGGCTACTNCCTCTGCGCCGTCGGCCCCGCCGCGCTCAACGACCCCCCGGCCTNAAGTGAAGAGGAGGTGGGGATTNATGGTTGGAACANCAATGGATAATTGTTATGNATTTTTTGTACATCAAAGGAGGANGAAGGGGCAAAGAAGAAACGGGTATTTGGTAAAANTGTCTTTGTGATTCGGTGATGGTCCTTGGCAATTGATGTCCTGGGTTTTGAGTTANAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10395#0 ------------------------------------------------------------ consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 AACTCAAATGCATTGAGCAAATTGGATGAGAAGGATGCTGGTGCTGCCAAGAACCCTGAG 60 consensus_10395#2 ------------------------------------------------------------ consensus_10395#0 ------------------------------------------------------------ consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 GTTGAGACTAGCTCATCAATACACAGATCTGAAAATCCAGGCCTGAGAACTACTGAACCT 120 consensus_10395#2 ------------------------------------------------------------ consensus_10395#0 ------------------------------------------------------------ consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 GGCTTGGTTTATCCTCCAATAGCTCCACTTGGTCATGATGATGCCTTCCCTGGCCCTGGC 180 consensus_10395#2 ------------------------------------------------------------ consensus_10395#0 --------------------------ACGAGGCTCTCGAAACCCCACGAACGCGACCACC 34 consensus_10395#3 ------------------------------------------CCCACGAACGCGACCACC 18 consensus_10395#1 GCAGGCTTCTATCCTCATAGTGGTATTGGTGGGGGGTGGCAGCATGCATGTTGGTCCAAA 240 consensus_10395#2 ---------------------AGT-CTGATTTACATTTGTTTCATACA-ACAGGTCCAAA 37 * * * *** consensus_10395#0 GCCTCCCCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGAC 94 consensus_10395#3 GCCTCCNCTCCCCCTTCCCTCGACCGCCGTGACGCCGCCCGCGAATCGCGCGATGGTGAC 78 consensus_10395#1 CGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCC--TGGGAGT 298 consensus_10395#2 CGATCCACGCTTCTTTCCTTCTAATCCCTTCCCTGTGCCCTTTGGTGGCCC--TGGGAGT 95 *** * * * **** ** * ** * * **** * ** * *** consensus_10395#0 CGACGCCGCCGCGATGGCCGTCGTGA---AGGCGGCGCGCCCGGCCTTCCGCGGCGCCCA 151 consensus_10395#3 CGACGCCGCCGCGATGGCCGTCGTGA---AGGCGGCGCGCCCGGCCTTNCGCGGCGCCCA 135 consensus_10395#1 --GTTCCACCA-GGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTG-- 353 consensus_10395#2 --GTTCCACCA-GGTGGTCGTTATGATCCAATTGGTCCACCAGATGTTCCAGGATTTG-- 150 ** ** * *** *** *** * ** * ** * ** * * consensus_10395#0 CGACGGGGTCGCCTTCGCCGCCAACGCCGCGTTCCTCGCCGCCGGCTACTCCCTCTGCGC 211 consensus_10395#3 CGACGGGGTCGCCTTCGCCGNCAACGTCGCGTTCCTCGNCGCCGGCTACTNCCTCTGCGC 195 consensus_10395#1 -AACCTTCTCGCTTTGTGAGGCGTC--CGAGGCCTCCAGCTGGGACTACTCACCCAG-AC 409 consensus_10395#2 -AACCTTCTCGCTTTGTGAGGCGTC--CGAGGCCTCCAGCTGGGACTACTCACCCAG-AC 206 ** **** ** * * * ** * * * * * ***** * * * * consensus_10395#0 CGTCGGCCCCGCCGCGCTCACCGACCCC--CCGCCCTCAGGTGAAGAGG---AGGTGGGG 266 consensus_10395#3 CGTCGGCCCCGCCGCGCTCAACGACCCC--CCGGCCTNAAGTGAAGAGG---AGGTGGGG 250 consensus_10395#1 CTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTC 469 consensus_10395#2 CTTGAGTTCTTCCAGCCGGGGCCGCACGGGCCCTTCTGAGATTCAGAGGCCCACCTCCTC 266 * * * * ** * * * * ** ** * * ***** * * consensus_10395#0 ATTGATGGTTG-GAACAGCA-TGGATAATTGTTATGCATTTTT-GTACATCAA----GGA 319 consensus_10395#3 ATTNATGGTTG-GAACANCAATGGATAATTGTTATGNATTTTTTGTACATCAAAGGAGGA 309 consensus_10395#1 CCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGA 529 consensus_10395#2 CCCACCGTTTCTGAATAACCCTGCCTTGCTTCTCATGCTGATCCAAAGAGCAGTTTGTGA 326 * ** *** * * ** * * * * * * * ** ** consensus_10395#0 GGAGAGGGGCAAGAAGAAACGGGTATT-G-GTAAAAT-GTCTG-GTGAT-CGGTGATG-T 373 consensus_10395#3 NGAAGGGGCAAAGAAGAAACGGGTATTTG-GTAAAANTGTCTTTGTGATTCGGTGATGGT 368 consensus_10395#1 GATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGC 589 consensus_10395#2 GATAGAACTGCTACAATTGCGAATAGCCGTACCAGACTCTGCCTGTAAAAAATTGGATGC 386 * ** ** * * * * ** * ** consensus_10395#0 CCTTGCCA-TTGATGTCCTGGATCTTGAGTCACAGAATAAAGGCCCTTATAATATCCAGA 432 consensus_10395#3 CCTTGGCAATTGATGTCCTGGGTTTTGAGTTANAAG------------------------ 404 consensus_10395#1 GAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGT 649 consensus_10395#2 GAACTCCTGTATCTGTCCTCAGTTGCAGTTTACCATATACTAGTAGTAGTATGCTATTGT 446 * * ****** * * * consensus_10395#0 TCAATGTGAAGGATTTCTTCTCCGAGGAGCAGCCAAAGAACTATGGGAACATGTACAAAA 492 consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 ATCAAAAAAAAAAAAAAAAAAAA------------------------------------- 672 consensus_10395#2 ATCAACCTATCTTTGTCACCCTTGCACACCTGTACTAATAGTGACCTGTGGGGTGGATTG 506 consensus_10395#0 ACTTTGCAGGCTTAATTGAGACCATGAACTCAAATGCATTGAGCAAATTGGATGAGAAGG 552 consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 ------------------------------------------------------------ consensus_10395#2 CTGATGAAATGCAAACCCTCCTGTGGAAAAAAAAAGCTTCTCCTGTCGTCAAAAAAAAAA 566 consensus_10395#0 ATGCTGGTGCTGCCAAGAACCCTGAGGTTGAGACTAGCTCATCAATACACAGATCTGAAA 612 consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 ------------------------------------------------------------ consensus_10395#2 ------------------------------------------------------------ consensus_10395#0 ATCCAGGCCTGAGAACTACTGAACCTGGCTTGGTTTATCCTCCAATAGCTCCACTTGGTC 672 consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 ------------------------------------------------------------ consensus_10395#2 ------------------------------------------------------------ consensus_10395#0 ATGATGATGCCTTCCCTGGCCTGGCGCAGGCTTATATCTTCATAGGGGATTGGTGGGGGT 732 consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 ------------------------------------------------------------ consensus_10395#2 ------------------------------------------------------------ consensus_10395#0 GGCAGCATGCTTGTTGGGCAAACCATCCAGCTGTTTCCTTTTAATCCTTCCTGGCGCTTG 792 consensus_10395#3 ------------------------------------------------------------ consensus_10395#1 ------------------------------------------------------------ consensus_10395#2 ------------------------------------------------------------ consensus_10395#0 GGGGGCCTGGAATGTCACCGGTGTCGTATGACCATTGGTCCACAAA 838 consensus_10395#3 ---------------------------------------------- consensus_10395#1 ---------------------------------------------- consensus_10395#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||