These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1047 fasta sequence [GAGATGGTATGTCTTCTGGTGTAAGAAGCTCTGAACCATGGGACTCGTATGCTTATTCTGGATCAAGAAGTGGTATGAATGCCAGGAGAGGGTTGGACTCTGTTTCATCTGATAACAGGGTGCCTAGAAATGAACGAAGCAATGATCAAGCAGGACCTAGGCGAGGATGGGACAAAGGACAGGGTCCATTTAGGTTTGGGGAGGGTCCTTCTGCTCGAAGTGCATGGCGAGCCTCCAAAGATGAAGCGACACTGGAAGCTATTAGGGTTGCTGGTGAAGATAATGGAACTTCTAGGGCAGCTGCGAGAGTTGCTATCCGTGAATTGGATGGGGAAACTTTGAATGATGATAATCAAGGGGATGAAAGAGGACCAATTTGGGAGTCTTGGACTCGTGCAATGGATGCGATA-CATGTTGGTGATATGGATTCGGCTTATGCTGAGGTTCTTTCAACTGGGGATGCTGAATTACTTGTAAAATTAATGGAGCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTG-CAAACGAAGTCCTACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGCTTCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAATCCCCCTAGATGCGAAGAACGACCTCTTACTGGGATTACACGAAGCTACTG-CCATTGAGTTG-CCTGATGATTGGGAGGGGGCGACG-CCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTGATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTTCATTTCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATT-AGGTTTGACAGAACCTTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGTTGATATTGTTTACCTCATAACCTGTGTTGGCTTTCCTATTTATAATTTGGAGGATCTCAATTTTTACATTTTTTACTGGCTCAAAAA] [+] EMBL OSS10848A [GAGATGGTATGTCTTCTGGTGTAAGAAGCTCTGAACCATGGGACTCGTATGCTTATTCTGGATCAAGAAGTGGTATGAATGCCAGGAGAGGGTTGGACTCTGTTTCATCTGATAACAGGGTGCCTAGAAATGAACGAAGCAATGATCAAGCAGGACCTAGGCGAGGATGGGACAAAGGACAGGGTCCATTTAGGTTTGGGGAGGGTCCTTCTGCTCGAAGTGCATGGCGAGCCTCCAAAGATGAAGCGACACTGGAAGCTATTAGGGTTGCTGGTGAAGATAATGGAACTTCTAGGGCAGCTGCGAGAGTTGCTATCCGTGAATTGGATGGGGAAACTTTGAATGATGATAATCAAGGGGATTAAAGAGGACCAATTTGGGAGTCTTGGACTCGTG ] [+] EMBL OSS10794A [GAGATGGTATGTCTTCTGGTGTAAGAAGCTCTGAACCATGGGACTCGTATGCTTATTCTGGATCAAGAAGTGGTATGAATGCCAGGAGAGGGTTGGACTCTGTTTCATCTGATAACAGGGTGCCTAGAAATGAACGAAGCAATGATCAAGCAGGACCTAGGCGAGGATGGGACAAAGGACAGGGTCCATTTAGGTTTGGGGAGGGTCCTTCTGCTCGAAGTGCATGGCGAGCCTCCAAAGATGAAGCGACACTGGAAGCTATTAGGGTTGCTGGTGAAGATAATGGAACTTCTAGGGCAGCTGCGAGAGTTGCTATCCGTGAATTGGATGGGGAAACTTTGAATGATGATAATCAAGGGGATGAAAGAGGACCAATTTGGGAGTCTTGGACTCGTG ] [+] EMBL CA305804 [ AGATGGTATGTCTTCTGGTGTAAGAAGCTCTGAACCATGGGACTCATATGCTTATTCTGGATCAAGAAGCGGTATGAATGCCAGGAGAGGATTGGACTCTGTTTCATCTGATAACAGAGTGCCTAGAAATGAACGAAGCAATGATCAAGCAGGACCTAGGCGAGGATGGGACAAAGGACAGGGTCCATTTAGGTTTGGGGAGGGTCCTTCTGCTCGAAGTGCATGGCGAGCCTNCAAAGATGAAGCGACACTGGAAGCTATTAGGGTTGCTGGTGAAGATAATGGAGCTTCTAGGGCAGCTGCAAGAGTTGCTATCCGNGAATTGGATGGGGAAACTGTGAATGATGATAATCAAGGGGATGAAAGAG ] [+] EMBL CA765918 [ ACTGGAAGCTATTAGGGTTGCTGGTGAAGATAATGGAGCTTCTAGGGCAGCTGCAAGAGTTGCTATCCGTGAATTGGATGGGGAAACTTTGAATGATGATAATCAAGGGGATGAAAGAGGACCAATTTGGGAGTCTTGGACTCGTGCAATGGATGCAATA CATGTTGGTGATATGGATTCGGCTTATGCTGAGGTCCTTCAAACTGGAGATGCTGAATTACTTGTAAAATTAATGGAGCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTG CAAACGAAGTCCTACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGCTTCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAATCCCCCTAGATGCGAAGAACGACCTCTTACTGGGATTACACGAAGCTACTG CCATCGAGTTG CCTGATGATTGGGAGGGGGCTACG CCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTGATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTTCATTGCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATTAAGGTTTGACAGAACCTTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGGTGATATTGGTTACCTCATAANCTGNGTTGGCTT ] [+] EMBL AU095765 [ ATTTGGGAGTCTTGGACTCGTGCAATGGATGCGATA CATGTTGGTGATATGGATTCGGCTTATGCTGAGGTTCTTTCAACTGGGGATGCTGAATTACTTGTAAAATTAATGGAGCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTG CAAACGAAGTCCTACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGCTTCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAATCCCCCTAGATGCGAAGAACGACCTCTTACTGGGATTACACGAAGCTACTG CCATTGAGTTG CCTGATGATTGGGAGGGGGCGACG CCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTGATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTTCATTTCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATT AGGTTTGACAGAACCTTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGTTGATATTGTTTACCTCATAACCTGTGTTGGCTTTCCTATTTATAATTTGGAGGATCTCAATTTTTACATTTTTTACTGGCTCAAAAA] [+] EMBL AU032583 [ CGATACCATGTTGGTGATATGGATCCGNCTTATGCTGAGGTTCTTTCAACTGGGGATGCTGAATTACTTGT AAATTAATGGAGCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTGCCAAACGAAGTCCTACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGCTTCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAATCCCCCTAGATGCGAAGAACGACCTCTTACTGGGATTACACGAAGCTACTGCCCATTGAGTTGCCCTGATGATTGGGAGGGGGCGACGCCCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTGATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTTCATTTCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATT AGGTTTGACAGAACCTTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGTTGATATTGTTTACCTCATAACCTGTGTTGGCTTTCCTATTTATAATTTGGAGGATCTCAATTTTTACATTTTTTACTGGCTCAAAAA] consensusID : consensus_10400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [AGAGGCCNAATTTGGGAGTCTTGGACTCGTGCAATGGATGCGATACATGTTGGTGATATGGATTCGGCTTATGCTGAGGTTCTTTCAACTGGGGATGCTGAATTACTTGTAAAATTAATGGAGCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTGCAAACGAAGTCCTACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGCTTCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAANCCCCCTAGATGCGAAGAACGACCTCTTACTGGGATTACACGAAGCTACTGCCATTGAGTTGCCTGATGATTGGGAGGGGGCGACGCCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTGATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTTCATTTCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATTAGGTTTGACAGAACCTTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGTTGATATTGTTTACCTCATAACCTGTGTTGGCTTTCCTATTTATAATTTGGAGGATCTCAATTTTTACAAAAAAAAAAAAAAAAAAA] [+] EMBL C98387 [AGAGGCCNAATTTGGGAGTCTTGGACTCGTGCAATGGATGCGATACATGTTGGTGATATGGATTCGGCTTATGCTGAGGTTCTTTCAACTGGGGATGCTGAATTACTTGTAAAATTAATGGAGCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTGCAAACGAAGTCCTACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGCTTCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAANCCCCCTAGATGCGAAGAACGACCTCTTACTGGGATTACACGAAGCTACTGCCATTGAGTTGCCTGATGATTGGGAGGGGGCGACGCCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTGATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTTCATTTCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATTAGGTTTGACAGAACCTTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGTTGATATTGTTTACCTCATAACCTGTGTTGGCTTTCCTATTTATAATTTGGAGGATCTCAATTTTTACAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10400#0 GAGATGGTATGTCTTCTGGTGTAAGAAGCTCTGAACCATGGGACTCGTATGCTTATTCTG 60 consensus_10400#1 ------------------------------------------------------------ consensus_10400#0 GATCAAGAAGTGGTATGAATGCCAGGAGAGGGTTGGACTCTGTTTCATCTGATAACAGGG 120 consensus_10400#1 ------------------------------------------------------------ consensus_10400#0 TGCCTAGAAATGAACGAAGCAATGATCAAGCAGGACCTAGGCGAGGATGGGACAAAGGAC 180 consensus_10400#1 ------------------------------------------------------------ consensus_10400#0 AGGGTCCATTTAGGTTTGGGGAGGGTCCTTCTGCTCGAAGTGCATGGCGAGCCTCCAAAG 240 consensus_10400#1 ------------------------------------------------------------ consensus_10400#0 ATGAAGCGACACTGGAAGCTATTAGGGTTGCTGGTGAAGATAATGGAACTTCTAGGGCAG 300 consensus_10400#1 ------------------------------------------------------------ consensus_10400#0 CTGCGAGAGTTGCTATCCGTGAATTGGATGGGGAAACTTTGAATGATGATAATCAAGGGG 360 consensus_10400#1 ------------------------------------------------------------ consensus_10400#0 ATGAAAGAGGACCAATTTGGGAGTCTTGGACTCGTGCAATGGATGCGATACATGTTGGTG 420 consensus_10400#1 -----AGAGGCCNAATTTGGGAGTCTTGGACTCGTGCAATGGATGCGATACATGTTGGTG 55 ***** * *********************************************** consensus_10400#0 ATATGGATTCGGCTTATGCTGAGGTTCTTTCAACTGGGGATGCTGAATTACTTGTAAAAT 480 consensus_10400#1 ATATGGATTCGGCTTATGCTGAGGTTCTTTCAACTGGGGATGCTGAATTACTTGTAAAAT 115 ************************************************************ consensus_10400#0 TAATGGAGCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTGCAAACGAAGTCC 540 consensus_10400#1 TAATGGAGCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTGCAAACGAAGTCC 175 ************************************************************ consensus_10400#0 TACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGC 600 consensus_10400#1 TACATGCTGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGC 235 ************************************************************ consensus_10400#0 TTCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAATCCCCCTAG 660 consensus_10400#1 TTCAGCAGTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAANCCCCCTAG 295 *************************************************** ******** consensus_10400#0 ATGCGAAGAACGACCTCTTACTGGGATTACACGAAGCTACTGCCATTGAGTTGCCTGATG 720 consensus_10400#1 ATGCGAAGAACGACCTCTTACTGGGATTACACGAAGCTACTGCCATTGAGTTGCCTGATG 355 ************************************************************ consensus_10400#0 ATTGGGAGGGGGCGACGCCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTG 780 consensus_10400#1 ATTGGGAGGGGGCGACGCCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTG 415 ************************************************************ consensus_10400#0 ATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTT 840 consensus_10400#1 ATCTGCAGCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTT 475 ************************************************************ consensus_10400#0 CATTTCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATTAGGTTTGA 900 consensus_10400#1 CATTTCTGCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATTAGGTTTGA 535 ************************************************************ consensus_10400#0 CAGAACCTTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGT 960 consensus_10400#1 CAGAACCTTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGT 595 ************************************************************ consensus_10400#0 TGATATTGTTTACCTCATAACCTGTGTTGGCTTTCCTATTTATAATTTGGAGGATCTCAA 1020 consensus_10400#1 TGATATTGTTTACCTCATAACCTGTGTTGGCTTTCCTATTTATAATTTGGAGGATCTCAA 655 ************************************************************ consensus_10400#0 TTTTTACATTTTTTACTGGCTCAAAAA 1047 consensus_10400#1 TTTTTACAAAAAAAAAAAAAAAAAAA- 681 ******** * **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||