These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 763 fasta sequence [ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGTATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA-GCATCTCCAACAAACATCAAATAC-TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCT-GTGGATGTACTGTTGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACT-TGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCATTGCTTAAGTACAATTGACATCCAGATGTGTTGTCG-ATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAAGGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTGCAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC] [+] EMBL CB660485 [ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGTATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA GCATCTCCAACAAACATCAAATAC TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCT GTGGATGTACTGTTGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACT TGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCATTGCTTAAGTACAATTGACATCCAGATGTGTTGTCG ATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAAGGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTGCAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC] [-] EMBL BI805090 [ tttttttttTAGTGAAAGTCATGCAGAAAGAATGATCATCAATCAG TCAAA ATACAA AGTAG TTGTTGG ATGGAAATACA CAA CAA A AGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGGGATCTCCAACAAACATCAAATACGTGGTACAACTCTCAA ACACAA CAATGCACAGACAAA CCAGAAAGGGCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGGCCGTCTTTGAAGCTGGTGGATGTACTGTGGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTGTGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCA TGGTTAAGTACAATTGACATCCAGATGTGTTGTCGCATCGATATCGTGGG ] [-] EMBL CB096707 [ CAGTCATGCAGAAAGAGTGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA GCATCTCCAACAAACATCAAATAC TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGG ] consensusID : consensus_10401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [AACCCTGAGCTAAATTTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTACCGAATGTTTCAGCATGTTGTAGCAGCTTTTGAAGTTGTCAATTGCAATGGTGTTGAGGTGCAATGCCAGGTATTCAGTTTTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTATCTGGTTACATTACTGCTCTTCCCTCTCTAAAAGGATGTCGCTTTTGTGTGTGTTCTGGATTGCTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCTTGGGCATGCCCAGAATCATCTAGGTNTAAGCAATCTGCCGATCTCCTAATCTCCTTTGCTTGGTCAGTTATTATTATACGATGTCATAAAATCACTATTGGATGGTCAGGTCGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGTCTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCNNGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTATTNGTGTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTANNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGTCACGTNCGGTACT] [+] EMBL CA753007 [AACCCTGAGCTAAATTTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTACCGAATGTTTCAGCATGTTGTAGCAGCTTTTGAAGTTGTCAATTGCAATGGTGTTGAGGTGCAATGCCAGGTATTCAGTTTTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTATCTGGTTACATTACTGCTCTTCCCTCTCTAAAAGGATGTCGCTTTTGTGTGTGTTCTGGATTGCTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCTTGGGCATGCCCAGAATCATCTAGGTNTAAGCAATCTGCCGATCTCCTAATCTCCTTTGCTTGGTCAGTTATTATTATACGATGTCATAAAATCACTATTGGATGGTCAGGTCGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGTCTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCNNGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTATTNGTGTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTANNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGTCACGTNCGGTACT] consensusID : consensus_10401#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 592 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA-GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAA-AGCATGTTCCACCCAATCACCATCAGTAGCACCACTT-GGAACCATCACATTGA-TTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCA-AGTGAATCATTGCTTAAGTACAA-TTGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT] [-] EMBL AU101585 [TTTTTTTTTTTTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGNAA AGC ] [-] EMBL AU095560 [ TTTTTTTTTTTTTTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAA AGCATGTTCCACCCAATCACCATCAGTAGCACCACTT GGAACCATCACATTGA TTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCA AGTGAATCATTGCTTAAGTACAA TTGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT] [-] EMBL BI810033 [ TTTTTTTT AGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAG TTGTGGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATG ACAGACAAACCCAGAAAGG CGGTATGATTGTACGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTG CCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAACAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGGAACCATCACATTGATTTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCACAGTGAATCATTG TTAAGTACAATTTGACATCCAGATGTGTTGTCGA TGATA TG TGGTGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10401#0 ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGT 60 consensus_10401#2 --------------------------------------------------TTTTTTTTTT 10 consensus_10401#1 ---------------------------------------------AACCCTGAGCTAAAT 15 * consensus_10401#0 ATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTT 120 consensus_10401#2 TTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTT 70 consensus_10401#1 TTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTA--CCGAATGTTTCAGCATGTTGT 73 * * * ** * ** * * * * * * ** * * * * * consensus_10401#0 GTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAG 180 consensus_10401#2 GTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAG 130 consensus_10401#1 AGCAGCTTTTGAAGTTGTCAATTGCAATGGTGT-TGAGGTGCAATGCCAGGTATTCAGTT 132 ** * ** *** * *** * ** ** * * ** consensus_10401#0 GCACCATCCAACACTCCAAACAGCA--TCTCCAACAAACATCAAATACTGTTACAACTCT 238 consensus_10401#2 GCACCATCCAACACTCCAAACAGCA--TCTCCAACAAACATCAAATACTGTTACAACTCT 188 consensus_10401#1 TTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTA--TCT 190 ** * * **** *** * * * * * * * ** * * ** * *** consensus_10401#0 CAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCC 298 consensus_10401#2 CAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCC 248 consensus_10401#1 GGTTACATTACTGCTCTTCCCTC----TCTAAAAGGATGTCGCTTTTGTG--TGTGTTCT 244 *** ** * * * * ***** * **** * ** ** consensus_10401#0 GGAATGAGACACCGGTGAGGTGATGAATTGCCCGTC-TTTGAAGCTGTGGATGTACTGTT 357 consensus_10401#2 GGAATGAGACACCGGTGAGGTGATGAATTGCCCGTC-TTTGAAGCTGTGGATGTACTGTT 307 consensus_10401#1 GGATTG--CTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCT 302 *** ** * * * ** *** ** * * * * * ** * * * consensus_10401#0 GGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGAACCATCACATTGA 417 consensus_10401#2 GGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGAACCATCACATTGA 367 consensus_10401#1 TGGGCATGCCCAGAATCATCTAGGTNTAAGCAAT-------CTGCCGATCTCCTAATCTC 355 ***** * * ** * * * ** * ** * * * ** consensus_10401#0 TTTCACTAGATTTAGCTGAAGTGATG-GAGGCTCCAAGTGAATCATTGCTTAAGTACAAT 476 consensus_10401#2 TTTCACTAGATTTAGCTGAAGTGATG-GAGGCTCCAAGTGAATCATTGCTTAAGTACAAT 426 consensus_10401#1 CTTTGCTTGGTC-AGTTATTATTATACGATGTCATAAAATCACTATTGGATG-GTCAGGT 413 ** ** * * ** * * ** ** * ** * **** * ** * consensus_10401#0 TGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCAC---C 533 consensus_10401#2 TGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCAC---C 483 consensus_10401#1 CGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGT 473 ** * * ** *** * *** * * * ***** * * ** * consensus_10401#0 TCAACACCAT---TGCAATTGACAACTTCAAAAGCTGCTA-----CAACATGCTTGAAAA 585 consensus_10401#2 TCAACACCAT---TGCAATTGACAACTTCAAAAGCTGCTA-----CAACATGCTTGAAAA 535 consensus_10401#1 CTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCN 533 *** * *** * *** * * * *** * * *** * * consensus_10401#0 CGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAA 645 consensus_10401#2 CGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT--- 592 consensus_10401#1 NGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTAT 593 * **** * * * * * * *** * ** ** * consensus_10401#0 GGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTG 705 consensus_10401#2 ------------------------------------------------------------ consensus_10401#1 TNGT-GTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTA 652 consensus_10401#0 CAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC-- 763 consensus_10401#2 ------------------------------------------------------------ consensus_10401#1 NNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGT 712 consensus_10401#0 ------------- consensus_10401#2 ------------- consensus_10401#1 CACGTNCGGTACT 725 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||