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Oryza sativa
cluster # 10401 cluster # 10401       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10401#0 length = 763 sequences # 3  
consensus_10401#1 length = 725 sequences # 1  
consensus_10401#2 length = 592 sequences # 3  

consensusID : consensus_10401#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 763
fasta sequence
                              [ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGTATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA-GCATCTCCAACAAACATCAAATAC-TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCT-GTGGATGTACTGTTGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACT-TGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCATTGCTTAAGTACAATTGACATCCAGATGTGTTGTCG-ATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAAGGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTGCAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC]

[+] EMBL CB660485             [ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGTATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA GCATCTCCAACAAACATCAAATAC TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCT GTGGATGTACTGTTGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACT TGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCATTGCTTAAGTACAATTGACATCCAGATGTGTTGTCG ATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAAGGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTGCAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC]
[-] EMBL BI805090             [                                                    tttttttttTAGTGAAAGTCATGCAGAAAGAATGATCATCAATCAG TCAAA ATACAA AGTAG TTGTTGG ATGGAAATACA CAA CAA A AGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGGGATCTCCAACAAACATCAAATACGTGGTACAACTCTCAA ACACAA CAATGCACAGACAAA CCAGAAAGGGCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGGCCGTCTTTGAAGCTGGTGGATGTACTGTGGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTGTGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCA TGGTTAAGTACAATTGACATCCAGATGTGTTGTCGCATCGATATCGTGGG                                                                                                                                                                                                                                                            ]
[-] EMBL CB096707             [                                                                   CAGTCATGCAGAAAGAGTGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA GCATCTCCAACAAACATCAAATAC TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_10401#0 ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGT ATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTT GTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAG GCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCA ACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGG AATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGG GCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGAACCATCACATTGATTT CACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCATTGCTTAAGTACAATTGAC ATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACAC CATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGG TGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAAGGACAGAATCCTTGC ATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTGCAAGGTTCTTTTTAC CAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC



consensusID : consensus_10401#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence
                              [AACCCTGAGCTAAATTTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTACCGAATGTTTCAGCATGTTGTAGCAGCTTTTGAAGTTGTCAATTGCAATGGTGTTGAGGTGCAATGCCAGGTATTCAGTTTTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTATCTGGTTACATTACTGCTCTTCCCTCTCTAAAAGGATGTCGCTTTTGTGTGTGTTCTGGATTGCTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCTTGGGCATGCCCAGAATCATCTAGGTNTAAGCAATCTGCCGATCTCCTAATCTCCTTTGCTTGGTCAGTTATTATTATACGATGTCATAAAATCACTATTGGATGGTCAGGTCGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGTCTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCNNGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTATTNGTGTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTANNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGTCACGTNCGGTACT]

[+] EMBL CA753007             [AACCCTGAGCTAAATTTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTACCGAATGTTTCAGCATGTTGTAGCAGCTTTTGAAGTTGTCAATTGCAATGGTGTTGAGGTGCAATGCCAGGTATTCAGTTTTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTATCTGGTTACATTACTGCTCTTCCCTCTCTAAAAGGATGTCGCTTTTGTGTGTGTTCTGGATTGCTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCTTGGGCATGCCCAGAATCATCTAGGTNTAAGCAATCTGCCGATCTCCTAATCTCCTTTGCTTGGTCAGTTATTATTATACGATGTCATAAAATCACTATTGGATGGTCAGGTCGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGTCTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCNNGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTATTNGTGTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTANNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGTCACGTNCGGTACT]


>consensus_10401#1 AACCCTGAGCTAAATTTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTACCGAATGT TTCAGCATGTTGTAGCAGCTTTTGAAGTTGTCAATTGCAATGGTGTTGAGGTGCAATGCC AGGTATTCAGTTTTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAG TATTCTATCTGGTTACATTACTGCTCTTCCCTCTCTAAAAGGATGTCGCTTTTGTGTGTG TTCTGGATTGCTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAG CTTGGGCATGCCCAGAATCATCTAGGTNTAAGCAATCTGCCGATCTCCTAATCTCCTTTG CTTGGTCAGTTATTATTATACGATGTCATAAAATCACTATTGGATGGTCAGGTCGAAAGA CTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGTCTGGCAC AAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCNNGCTTCC TNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTATTNGTGTT TCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTANNCATACC GGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGTCACGTNCG GTACT



consensusID : consensus_10401#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 592
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA-GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAA-AGCATGTTCCACCCAATCACCATCAGTAGCACCACTT-GGAACCATCACATTGA-TTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCA-AGTGAATCATTGCTTAAGTACAA-TTGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT]

[-] EMBL AU101585             [TTTTTTTTTTTTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGNAA AGC                                                                                                                                                                                                                                                                                       ]
[-] EMBL AU095560             [ TTTTTTTTTTTTTTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAA AGCATGTTCCACCCAATCACCATCAGTAGCACCACTT GGAACCATCACATTGA TTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCA AGTGAATCATTGCTTAAGTACAA TTGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT]
[-] EMBL BI810033             [                TTTTTTTT  AGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAG TTGTGGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATG ACAGACAAACCCAGAAAGG CGGTATGATTGTACGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTG CCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAACAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGGAACCATCACATTGATTTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCACAGTGAATCATTG TTAAGTACAATTTGACATCCAGATGTGTTGTCGA TGATA TG TGGTGCT                                                                                                                               ]


>consensus_10401#2 TTTTTTTTTTTTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACA ACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACA GCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTT ACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGC TATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATG TACTGTTGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGAACCATC ACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCATTGCTTAAG TACAATTGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGC ACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATT CCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10401#0      ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGT 60
consensus_10401#2      --------------------------------------------------TTTTTTTTTT 10
consensus_10401#1      ---------------------------------------------AACCCTGAGCTAAAT 15
                                                                                  *

consensus_10401#0      ATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTT 120
consensus_10401#2      TTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTT 70
consensus_10401#1      TTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTA--CCGAATGTTTCAGCATGTTGT 73
                        *  *     *  **  * ** * * *       * *   * **  *   *   *  * *

consensus_10401#0      GTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAG 180
consensus_10401#2      GTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAG 130
consensus_10401#1      AGCAGCTTTTGAAGTTGTCAATTGCAATGGTGT-TGAGGTGCAATGCCAGGTATTCAGTT 132
                           ** *   **     ***     *  ***  *  **   **      * * **    

consensus_10401#0      GCACCATCCAACACTCCAAACAGCA--TCTCCAACAAACATCAAATACTGTTACAACTCT 238
consensus_10401#2      GCACCATCCAACACTCCAAACAGCA--TCTCCAACAAACATCAAATACTGTTACAACTCT 188
consensus_10401#1      TTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTA--TCT 190
                            ** * * ****  *** * *  * *   *  *   * **  * * **  *  ***

consensus_10401#0      CAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCC 298
consensus_10401#2      CAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCC 248
consensus_10401#1      GGTTACATTACTGCTCTTCCCTC----TCTAAAAGGATGTCGCTTTTGTG--TGTGTTCT 244
                           ***  **   *   *   *     *  *****  *      ****   * ** ** 

consensus_10401#0      GGAATGAGACACCGGTGAGGTGATGAATTGCCCGTC-TTTGAAGCTGTGGATGTACTGTT 357
consensus_10401#2      GGAATGAGACACCGGTGAGGTGATGAATTGCCCGTC-TTTGAAGCTGTGGATGTACTGTT 307
consensus_10401#1      GGATTG--CTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCT 302
                       *** **         *    * * ** *** ** *  * * *   *    ** *   * *

consensus_10401#0      GGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGAACCATCACATTGA 417
consensus_10401#2      GGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGAACCATCACATTGA 367
consensus_10401#1      TGGGCATGCCCAGAATCATCTAGGTNTAAGCAAT-------CTGCCGATCTCCTAATCTC 355
                        *****   *  *   ** * *      * ** *       **    * *  *  **   

consensus_10401#0      TTTCACTAGATTTAGCTGAAGTGATG-GAGGCTCCAAGTGAATCATTGCTTAAGTACAAT 476
consensus_10401#2      TTTCACTAGATTTAGCTGAAGTGATG-GAGGCTCCAAGTGAATCATTGCTTAAGTACAAT 426
consensus_10401#1      CTTTGCTTGGTC-AGTTATTATTATACGATGTCATAAAATCACTATTGGATG-GTCAGGT 413
                        **  ** * *  ** *    * **  ** *    **    *  ****  *  **    *

consensus_10401#0      TGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCAC---C 533
consensus_10401#2      TGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCAC---C 483
consensus_10401#1      CGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGT 473
                        ** *  * **  *** *   *** *   *  *  *****    * *     ** *    

consensus_10401#0      TCAACACCAT---TGCAATTGACAACTTCAAAAGCTGCTA-----CAACATGCTTGAAAA 585
consensus_10401#2      TCAACACCAT---TGCAATTGACAACTTCAAAAGCTGCTA-----CAACATGCTTGAAAA 535
consensus_10401#1      CTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCN 533
                           *** *    *** *  *** *  * *   ***  *      *   *** *  *   

consensus_10401#0      CGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAA 645
consensus_10401#2      CGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT--- 592
consensus_10401#1      NGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTAT 593
                        * ****         * *  * * *         *  ***  * **     ** *    

consensus_10401#0      GGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTG 705
consensus_10401#2      ------------------------------------------------------------
consensus_10401#1      TNGT-GTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTA 652
                                                                                   

consensus_10401#0      CAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC-- 763
consensus_10401#2      ------------------------------------------------------------
consensus_10401#1      NNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGT 712
                                                                                   

consensus_10401#0      -------------
consensus_10401#2      -------------
consensus_10401#1      CACGTNCGGTACT 725
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)